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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:188640..190159 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00570.1 vs.
Match: EWM21486.1 (alpha beta hydrolase fold-3 domain protein [Nannochloropsis gaditana]) HSP 1 Score: 187.6 bits (475), Expect = 8.000e-44 Identity = 129/376 (34.31%), Postives = 199/376 (52.93%), Query Frame = 0
Query: 50 IKLTEGSKRYTA-LWPK--PPVGDVDLAATRATVEYMSRLVGGRVLPMRRVEDIPLTSLDGSSPFFVRNYFPTLLEEDKVGEQKLGVILYSHGGGGMVGSVASYDSMCRRIAATCHMAVVSVDYRLTPEHPYPAALEDMEAAFQFVVNDLVMRQYPEVLDPGKVVLMGDSFGGHLAASLLLRLHRKEEYKQSIKP----KACVLIYPSVDMKNARHPSFSTHANVSHLTPEMINMFFNAYLPDKNGNGTSSSSSSSSSRSDHYSGSSSSSSSSCNGNGCSNNTEGLFQEELRLDPDVSVLYSTHLHLFPPTLVLSAACDPLIDEGILFVKRLREEKVDVRHVIYPEIIHGFFSGYDMFPEAEMALGETANFLKEGL 419
+ LT S+ + A ++P PP D+ L RA +E +R +GG L +RRVED+ + SLDG++ VR Y P + + L V+LY+HGGG + G++ ++D +CRRIA VV+VDYRL+PEH +PAAL+D+EAA+ +VV + D ++ L GDS GG+L ++L +RL K E ++P + VLIYP VD++ R S+ T+ G G S+++ + Y G + + + + + + P+VS + H PPTL+L+AACDPL E L +RL V VR +IYP+ +H + + +D+FPE+E +L E FL E +
Sbjct: 5 MSLTPASQAFLAQIYPPNAPPARDMPLDVGRAKMEAAARALGGPYLSVRRVEDLSIPSLDGNASVKVRVYSPKI-------DATLPVLLYAHGGGFVKGNLETHDQLCRRIAVGSDHVVVAVDYRLSPEHRFPAALDDVEAAYTWVVGQVAW-------DATRISLAGDSAGGNLMSALAVRLAGKPE--SQVRPEHRIRRQVLIYPVVDVRR-RGESYETY-----------------------GTGYGLSATAIDYYLESYLGPAYTDAKDEDA-----------RRAVLEKPEVSTILYQHPEKLPPTLILTAACDPLASEAGLLKERLEAAGVPVRQIIYPDTVHAYMTFFDIFPESEQSLEEIVRFLNEDI 329
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00570.1 ID=NO10G00570.1|Name=NO10G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp CGCAGTCTCGAGCATCCGAGCACAGCAACATTCTTTCTCGCCGGTTGTTT CTCGCTCATATTTCGGCAAATTGAGCCCGTTGTGCTTGTGTCACCCGGAG TAAGCTGTCAATTTGTCTCCGCGCATGTGCACAGCCAATGGACCGAGCCC TTGCGTTTCCGCCGGGAAAATAAGAAGAAAACATGCAAGCCTTTTTAATG AGCGCCTCCCTCCTCTCCTCTTTTCCACTATACCACAGCCCACAAGCATG GCGTCCCATACATCAAATACGATCAAACTCACTGAGGGTAGCAAGCGGTA CACTGCGCTGTGGCCCAAGCCGCCTGTGGGCGACGTAGACCTTGCTGCCA CACGCGCGACAGTGGAGTACATGTCCCGTCTCGTCGGCGGCCGTGTCTTG CCCATGCGTCGTGTGGAAGACATTCCGCTCACCTCTCTCGATGGATCTAG CCCTTTTTTTGTCCGCAACTACTTCCCCACTCTTCTTGAAGAAGATAAGG TGGGCGAGCAGAAGTTGGGCGTCATTCTGTATTCCCACGGGGGCGGAGGA ATGGTGGGCAGCGTGGCCTCCTACGACTCCATGTGCCGACGGATCGCCGC CACCTGTCACATGGCCGTCGTCTCGGTGGACTACCGCCTGACACCCGAGC ACCCTTACCCCGCCGCCTTAGAAGACATGGAAGCTGCCTTTCAATTCGTC GTCAATGATTTGGTCATGAGGCAGTACCCCGAGGTACTGGACCCGGGGAA GGTGGTGCTGATGGGGGACTCCTTCGGAGGGCACCTGGCCGCCTCGCTGC TGCTCCGCCTGCACAGAAAGGAAGAGTACAAGCAGAGCATCAAGCCGAAA GCTTGTGTCTTAATCTATCCGAGCGTGGATATGAAAAATGCGCGACATCC GTCCTTCTCGACCCATGCGAACGTTAGCCACTTAACGCCGGAAATGATTA ATATGTTCTTCAATGCCTACCTGCCTGATAAAAATGGGAATGGTACTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGAAGTGATCATTATAGCGGTAGTAG TAGTAGCAGCAGCAGCAGCTGTAATGGCAATGGCTGCAGCAATAATACGG AAGGCCTCTTCCAAGAAGAGCTCCGACTAGATCCTGATGTATCAGTGCTC TATTCCACCCATTTACACCTCTTTCCCCCTACCCTCGTCCTCAGCGCGGC CTGTGACCCTTTGATAGACGAAGGCATCTTGTTCGTCAAGCGATTGAGAG AGGAGAAAGTGGATGTCCGGCATGTGATATATCCCGAGATAATTCACGGC TTCTTTTCAGGCTATGATATGTTCCCGGAGGCGGAAATGGCATTGGGAGA GACTGCAAATTTCTTGAAGGAGGGCTTGAGATTGTGAATATGATGGGGGC AAGGAGGAAGGTGGGATGAATAGTCGCTGTGGATATAACGACATGACGAT TTGAATGAATAAAGAGTATGTTGAAGTTTCAAGGGCAGGAAAGGAAAAGA AATCGTTCAACATTCCAACC back to topprotein sequence of NO10G00570.1 >NO10G00570.1-protein ID=NO10G00570.1-protein|Name=NO10G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp MCTANGPSPCVSAGKIRRKHASLFNERLPPLLFSTIPQPTSMASHTSNTI KLTEGSKRYTALWPKPPVGDVDLAATRATVEYMSRLVGGRVLPMRRVEDI PLTSLDGSSPFFVRNYFPTLLEEDKVGEQKLGVILYSHGGGGMVGSVASY DSMCRRIAATCHMAVVSVDYRLTPEHPYPAALEDMEAAFQFVVNDLVMRQ YPEVLDPGKVVLMGDSFGGHLAASLLLRLHRKEEYKQSIKPKACVLIYPS VDMKNARHPSFSTHANVSHLTPEMINMFFNAYLPDKNGNGTSSSSSSSSS RSDHYSGSSSSSSSSCNGNGCSNNTEGLFQEELRLDPDVSVLYSTHLHLF PPTLVLSAACDPLIDEGILFVKRLREEKVDVRHVIYPEIIHGFFSGYDMF PEAEMALGETANFLKEGLRL* back to topmRNA from alignment at chr10:188640..190159- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00570.1 ID=NO10G00570.1|Name=NO10G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at chr10:188640..190159- (Nannochloropsis oceanica) CGCAGTCTCGAGCATCCGAGCACAGCAACATTCTTTCTCGCCGGTTGTTT
CTCGCTCATATTTCGGCAAATTGAGCCCGTTGTGCTTGTGTCACCCGGAG
TAAGCTGTCAATTTGTCTCCGCGCATGTGCACAGCCAATGGACCGAGCCC
TTGCGTTTCCGCCGGGAAAATAAGAAGAAAACATGCAAGCCTTTTTAATG
AGCGCCTCCCTCCTCTCCTCTTTTCCACTATACCACAGCCCACAAGCATG
GCGTCCCATACATCAAATACGATCAAACTCACTGAGGGTAGCAAGCGGTA
CACTGCGCTGTGGCCCAAGCCGCCTGTGGGCGACGTAGACCTTGCTGCCA
CACGCGCGACAGTGGAGTACATGTCCCGTCTCGTCGGCGGCCGTGTCTTG
CCCATGCGTCGTGTGGAAGACATTCCGCTCACCTCTCTCGATGGATCTAG
CCCTTTTTTTGTCCGCAACTACTTCCCCACTCTTCTTGAAGAAGATAAGG
TGGGCGAGCAGAAGTTGGGCGTCATTCTGTATTCCCACGGGGGCGGAGGA
ATGGTGGGCAGCGTGGCCTCCTACGACTCCATGTGCCGACGGATCGCCGC
CACCTGTCACATGGCCGTCGTCTCGGTGGACTACCGCCTGACACCCGAGC
ACCCTTACCCCGCCGCCTTAGAAGACATGGAAGCTGCCTTTCAATTCGTC
GTCAATGATTTGGTCATGAGGCAGTACCCCGAGGTACTGGACCCGGGGAA
GGTGGTGCTGATGGGGGACTCCTTCGGAGGGCACCTGGCCGCCTCGCTGC
TGCTCCGCCTGCACAGAAAGGAAGAGTACAAGCAGAGCATCAAGCCGAAA
GCTTGTGTCTTAATCTATCCGAGCGTGGATATGAAAAATGCGCGACATCC
GTCCTTCTCGACCCATGCGAACGTTAGCCACTTAACGCCGGAAATGATTA
ATATGTTCTTCAATGCCTACCTGCCTGATAAAAATGGGAATGGTACTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGAAGTGATCATTATAGCGGTAGTAG
TAGTAGCAGCAGCAGCAGCTGTAATGGCAATGGCTGCAGCAATAATACGG
AAGGCCTCTTCCAAGAAGAGCTCCGACTAGATCCTGATGTATCAGTGCTC
TATTCCACCCATTTACACCTCTTTCCCCCTACCCTCGTCCTCAGCGCGGC
CTGTGACCCTTTGATAGACGAAGGCATCTTGTTCGTCAAGCGATTGAGAG
AGGAGAAAGTGGATGTCCGGCATGTGATATATCCCGAGATAATTCACGGC
TTCTTTTCAGGCTATGATATGTTCCCGGAGGCGGAAATGGCATTGGGAGA
GACTGCAAATTTCTTGAAGGAGGGCTTGAGATTGTGAATATGATGGGGGC
AAGGAGGAAGGTGGGATGAATAGTCGCTGTGGATATAACGACATGACGAT
TTGAATGAATAAAGAGTATGTTGAAGTTTCAAGGGCAGGAAAGGAAAAGA
AATCGTTCAACATTCCAACC back to topCoding sequence (CDS) from alignment at chr10:188640..190159- >NO10G00570.1 ID=NO10G00570.1|Name=NO10G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at chr10:188640..190159- (Nannochloropsis oceanica) ATGTGCACAGCCAATGGACCGAGCCCTTGCGTTTCCGCCGGGAAAATAAG AAGAAAACATGCAAGCCTTTTTAATGAGCGCCTCCCTCCTCTCCTCTTTT CCACTATACCACAGCCCACAAGCATGGCGTCCCATACATCAAATACGATC AAACTCACTGAGGGTAGCAAGCGGTACACTGCGCTGTGGCCCAAGCCGCC TGTGGGCGACGTAGACCTTGCTGCCACACGCGCGACAGTGGAGTACATGT CCCGTCTCGTCGGCGGCCGTGTCTTGCCCATGCGTCGTGTGGAAGACATT CCGCTCACCTCTCTCGATGGATCTAGCCCTTTTTTTGTCCGCAACTACTT CCCCACTCTTCTTGAAGAAGATAAGGTGGGCGAGCAGAAGTTGGGCGTCA TTCTGTATTCCCACGGGGGCGGAGGAATGGTGGGCAGCGTGGCCTCCTAC GACTCCATGTGCCGACGGATCGCCGCCACCTGTCACATGGCCGTCGTCTC GGTGGACTACCGCCTGACACCCGAGCACCCTTACCCCGCCGCCTTAGAAG ACATGGAAGCTGCCTTTCAATTCGTCGTCAATGATTTGGTCATGAGGCAG TACCCCGAGGTACTGGACCCGGGGAAGGTGGTGCTGATGGGGGACTCCTT CGGAGGGCACCTGGCCGCCTCGCTGCTGCTCCGCCTGCACAGAAAGGAAG AGTACAAGCAGAGCATCAAGCCGAAAGCTTGTGTCTTAATCTATCCGAGC GTGGATATGAAAAATGCGCGACATCCGTCCTTCTCGACCCATGCGAACGT TAGCCACTTAACGCCGGAAATGATTAATATGTTCTTCAATGCCTACCTGC CTGATAAAAATGGGAATGGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGT AGAAGTGATCATTATAGCGGTAGTAGTAGTAGCAGCAGCAGCAGCTGTAA TGGCAATGGCTGCAGCAATAATACGGAAGGCCTCTTCCAAGAAGAGCTCC GACTAGATCCTGATGTATCAGTGCTCTATTCCACCCATTTACACCTCTTT CCCCCTACCCTCGTCCTCAGCGCGGCCTGTGACCCTTTGATAGACGAAGG CATCTTGTTCGTCAAGCGATTGAGAGAGGAGAAAGTGGATGTCCGGCATG TGATATATCCCGAGATAATTCACGGCTTCTTTTCAGGCTATGATATGTTC CCGGAGGCGGAAATGGCATTGGGAGAGACTGCAAATTTCTTGAAGGAGGG CTTGAGATTGTGA back to top
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