NO10G00570.1, NO10G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00570.1
Unique NameNO10G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1520
Alignment locationchr10:188640..190159 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:188640..190159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO10G00570.1 vs.
Match: EWM21486.1 (alpha beta hydrolase fold-3 domain protein [Nannochloropsis gaditana])

HSP 1 Score: 187.6 bits (475), Expect = 8.000e-44
Identity = 129/376 (34.31%), Postives = 199/376 (52.93%), Query Frame = 0
Query:   50 IKLTEGSKRYTA-LWPK--PPVGDVDLAATRATVEYMSRLVGGRVLPMRRVEDIPLTSLDGSSPFFVRNYFPTLLEEDKVGEQKLGVILYSHGGGGMVGSVASYDSMCRRIAATCHMAVVSVDYRLTPEHPYPAALEDMEAAFQFVVNDLVMRQYPEVLDPGKVVLMGDSFGGHLAASLLLRLHRKEEYKQSIKP----KACVLIYPSVDMKNARHPSFSTHANVSHLTPEMINMFFNAYLPDKNGNGTSSSSSSSSSRSDHYSGSSSSSSSSCNGNGCSNNTEGLFQEELRLDPDVSVLYSTHLHLFPPTLVLSAACDPLIDEGILFVKRLREEKVDVRHVIYPEIIHGFFSGYDMFPEAEMALGETANFLKEGL 419
            + LT  S+ + A ++P   PP  D+ L   RA +E  +R +GG  L +RRVED+ + SLDG++   VR Y P +       +  L V+LY+HGGG + G++ ++D +CRRIA      VV+VDYRL+PEH +PAAL+D+EAA+ +VV  +         D  ++ L GDS GG+L ++L +RL  K E    ++P    +  VLIYP VD++  R  S+ T+                       G G   S+++     + Y G + + +   +            +  +   P+VS +   H    PPTL+L+AACDPL  E  L  +RL    V VR +IYP+ +H + + +D+FPE+E +L E   FL E +
Sbjct:    5 MSLTPASQAFLAQIYPPNAPPARDMPLDVGRAKMEAAARALGGPYLSVRRVEDLSIPSLDGNASVKVRVYSPKI-------DATLPVLLYAHGGGFVKGNLETHDQLCRRIAVGSDHVVVAVDYRLSPEHRFPAALDDVEAAYTWVVGQVAW-------DATRISLAGDSAGGNLMSALAVRLAGKPE--SQVRPEHRIRRQVLIYPVVDVRR-RGESYETY-----------------------GTGYGLSATAIDYYLESYLGPAYTDAKDEDA-----------RRAVLEKPEVSTILYQHPEKLPPTLILTAACDPLASEAGLLKERLEAAGVPVRQIIYPDTVHAYMTFFDIFPESEQSLEEIVRFLNEDI 329          
The following BLAST results are available for this feature:
BLAST of NO10G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21486.18.000e-4434.31alpha beta hydrolase fold-3 domain protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00570NO10G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00570.1NO10G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00570.1.cds1NO10G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00570.1 ID=NO10G00570.1|Name=NO10G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp
CGCAGTCTCGAGCATCCGAGCACAGCAACATTCTTTCTCGCCGGTTGTTT
CTCGCTCATATTTCGGCAAATTGAGCCCGTTGTGCTTGTGTCACCCGGAG
TAAGCTGTCAATTTGTCTCCGCGCATGTGCACAGCCAATGGACCGAGCCC
TTGCGTTTCCGCCGGGAAAATAAGAAGAAAACATGCAAGCCTTTTTAATG
AGCGCCTCCCTCCTCTCCTCTTTTCCACTATACCACAGCCCACAAGCATG
GCGTCCCATACATCAAATACGATCAAACTCACTGAGGGTAGCAAGCGGTA
CACTGCGCTGTGGCCCAAGCCGCCTGTGGGCGACGTAGACCTTGCTGCCA
CACGCGCGACAGTGGAGTACATGTCCCGTCTCGTCGGCGGCCGTGTCTTG
CCCATGCGTCGTGTGGAAGACATTCCGCTCACCTCTCTCGATGGATCTAG
CCCTTTTTTTGTCCGCAACTACTTCCCCACTCTTCTTGAAGAAGATAAGG
TGGGCGAGCAGAAGTTGGGCGTCATTCTGTATTCCCACGGGGGCGGAGGA
ATGGTGGGCAGCGTGGCCTCCTACGACTCCATGTGCCGACGGATCGCCGC
CACCTGTCACATGGCCGTCGTCTCGGTGGACTACCGCCTGACACCCGAGC
ACCCTTACCCCGCCGCCTTAGAAGACATGGAAGCTGCCTTTCAATTCGTC
GTCAATGATTTGGTCATGAGGCAGTACCCCGAGGTACTGGACCCGGGGAA
GGTGGTGCTGATGGGGGACTCCTTCGGAGGGCACCTGGCCGCCTCGCTGC
TGCTCCGCCTGCACAGAAAGGAAGAGTACAAGCAGAGCATCAAGCCGAAA
GCTTGTGTCTTAATCTATCCGAGCGTGGATATGAAAAATGCGCGACATCC
GTCCTTCTCGACCCATGCGAACGTTAGCCACTTAACGCCGGAAATGATTA
ATATGTTCTTCAATGCCTACCTGCCTGATAAAAATGGGAATGGTACTAGT
AGTAGTAGTAGTAGTAGTAGTAGTAGAAGTGATCATTATAGCGGTAGTAG
TAGTAGCAGCAGCAGCAGCTGTAATGGCAATGGCTGCAGCAATAATACGG
AAGGCCTCTTCCAAGAAGAGCTCCGACTAGATCCTGATGTATCAGTGCTC
TATTCCACCCATTTACACCTCTTTCCCCCTACCCTCGTCCTCAGCGCGGC
CTGTGACCCTTTGATAGACGAAGGCATCTTGTTCGTCAAGCGATTGAGAG
AGGAGAAAGTGGATGTCCGGCATGTGATATATCCCGAGATAATTCACGGC
TTCTTTTCAGGCTATGATATGTTCCCGGAGGCGGAAATGGCATTGGGAGA
GACTGCAAATTTCTTGAAGGAGGGCTTGAGATTGTGAATATGATGGGGGC
AAGGAGGAAGGTGGGATGAATAGTCGCTGTGGATATAACGACATGACGAT
TTGAATGAATAAAGAGTATGTTGAAGTTTCAAGGGCAGGAAAGGAAAAGA
AATCGTTCAACATTCCAACC
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protein sequence of NO10G00570.1

>NO10G00570.1-protein ID=NO10G00570.1-protein|Name=NO10G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=421bp
MCTANGPSPCVSAGKIRRKHASLFNERLPPLLFSTIPQPTSMASHTSNTI
KLTEGSKRYTALWPKPPVGDVDLAATRATVEYMSRLVGGRVLPMRRVEDI
PLTSLDGSSPFFVRNYFPTLLEEDKVGEQKLGVILYSHGGGGMVGSVASY
DSMCRRIAATCHMAVVSVDYRLTPEHPYPAALEDMEAAFQFVVNDLVMRQ
YPEVLDPGKVVLMGDSFGGHLAASLLLRLHRKEEYKQSIKPKACVLIYPS
VDMKNARHPSFSTHANVSHLTPEMINMFFNAYLPDKNGNGTSSSSSSSSS
RSDHYSGSSSSSSSSCNGNGCSNNTEGLFQEELRLDPDVSVLYSTHLHLF
PPTLVLSAACDPLIDEGILFVKRLREEKVDVRHVIYPEIIHGFFSGYDMF
PEAEMALGETANFLKEGLRL*
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mRNA from alignment at chr10:188640..190159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00570.1 ID=NO10G00570.1|Name=NO10G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1520bp|location=Sequence derived from alignment at chr10:188640..190159- (Nannochloropsis oceanica)
CGCAGTCTCGAGCATCCGAGCACAGCAACATTCTTTCTCGCCGGTTGTTT CTCGCTCATATTTCGGCAAATTGAGCCCGTTGTGCTTGTGTCACCCGGAG TAAGCTGTCAATTTGTCTCCGCGCATGTGCACAGCCAATGGACCGAGCCC TTGCGTTTCCGCCGGGAAAATAAGAAGAAAACATGCAAGCCTTTTTAATG AGCGCCTCCCTCCTCTCCTCTTTTCCACTATACCACAGCCCACAAGCATG GCGTCCCATACATCAAATACGATCAAACTCACTGAGGGTAGCAAGCGGTA CACTGCGCTGTGGCCCAAGCCGCCTGTGGGCGACGTAGACCTTGCTGCCA CACGCGCGACAGTGGAGTACATGTCCCGTCTCGTCGGCGGCCGTGTCTTG CCCATGCGTCGTGTGGAAGACATTCCGCTCACCTCTCTCGATGGATCTAG CCCTTTTTTTGTCCGCAACTACTTCCCCACTCTTCTTGAAGAAGATAAGG TGGGCGAGCAGAAGTTGGGCGTCATTCTGTATTCCCACGGGGGCGGAGGA ATGGTGGGCAGCGTGGCCTCCTACGACTCCATGTGCCGACGGATCGCCGC CACCTGTCACATGGCCGTCGTCTCGGTGGACTACCGCCTGACACCCGAGC ACCCTTACCCCGCCGCCTTAGAAGACATGGAAGCTGCCTTTCAATTCGTC GTCAATGATTTGGTCATGAGGCAGTACCCCGAGGTACTGGACCCGGGGAA GGTGGTGCTGATGGGGGACTCCTTCGGAGGGCACCTGGCCGCCTCGCTGC TGCTCCGCCTGCACAGAAAGGAAGAGTACAAGCAGAGCATCAAGCCGAAA GCTTGTGTCTTAATCTATCCGAGCGTGGATATGAAAAATGCGCGACATCC GTCCTTCTCGACCCATGCGAACGTTAGCCACTTAACGCCGGAAATGATTA ATATGTTCTTCAATGCCTACCTGCCTGATAAAAATGGGAATGGTACTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGAAGTGATCATTATAGCGGTAGTAG TAGTAGCAGCAGCAGCAGCTGTAATGGCAATGGCTGCAGCAATAATACGG AAGGCCTCTTCCAAGAAGAGCTCCGACTAGATCCTGATGTATCAGTGCTC TATTCCACCCATTTACACCTCTTTCCCCCTACCCTCGTCCTCAGCGCGGC CTGTGACCCTTTGATAGACGAAGGCATCTTGTTCGTCAAGCGATTGAGAG AGGAGAAAGTGGATGTCCGGCATGTGATATATCCCGAGATAATTCACGGC TTCTTTTCAGGCTATGATATGTTCCCGGAGGCGGAAATGGCATTGGGAGA GACTGCAAATTTCTTGAAGGAGGGCTTGAGATTGTGAATATGATGGGGGC AAGGAGGAAGGTGGGATGAATAGTCGCTGTGGATATAACGACATGACGAT TTGAATGAATAAAGAGTATGTTGAAGTTTCAAGGGCAGGAAAGGAAAAGA AATCGTTCAACATTCCAACC
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Coding sequence (CDS) from alignment at chr10:188640..190159-

>NO10G00570.1 ID=NO10G00570.1|Name=NO10G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=1263bp|location=Sequence derived from alignment at chr10:188640..190159- (Nannochloropsis oceanica)
ATGTGCACAGCCAATGGACCGAGCCCTTGCGTTTCCGCCGGGAAAATAAG
AAGAAAACATGCAAGCCTTTTTAATGAGCGCCTCCCTCCTCTCCTCTTTT
CCACTATACCACAGCCCACAAGCATGGCGTCCCATACATCAAATACGATC
AAACTCACTGAGGGTAGCAAGCGGTACACTGCGCTGTGGCCCAAGCCGCC
TGTGGGCGACGTAGACCTTGCTGCCACACGCGCGACAGTGGAGTACATGT
CCCGTCTCGTCGGCGGCCGTGTCTTGCCCATGCGTCGTGTGGAAGACATT
CCGCTCACCTCTCTCGATGGATCTAGCCCTTTTTTTGTCCGCAACTACTT
CCCCACTCTTCTTGAAGAAGATAAGGTGGGCGAGCAGAAGTTGGGCGTCA
TTCTGTATTCCCACGGGGGCGGAGGAATGGTGGGCAGCGTGGCCTCCTAC
GACTCCATGTGCCGACGGATCGCCGCCACCTGTCACATGGCCGTCGTCTC
GGTGGACTACCGCCTGACACCCGAGCACCCTTACCCCGCCGCCTTAGAAG
ACATGGAAGCTGCCTTTCAATTCGTCGTCAATGATTTGGTCATGAGGCAG
TACCCCGAGGTACTGGACCCGGGGAAGGTGGTGCTGATGGGGGACTCCTT
CGGAGGGCACCTGGCCGCCTCGCTGCTGCTCCGCCTGCACAGAAAGGAAG
AGTACAAGCAGAGCATCAAGCCGAAAGCTTGTGTCTTAATCTATCCGAGC
GTGGATATGAAAAATGCGCGACATCCGTCCTTCTCGACCCATGCGAACGT
TAGCCACTTAACGCCGGAAATGATTAATATGTTCTTCAATGCCTACCTGC
CTGATAAAAATGGGAATGGTACTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGAAGTGATCATTATAGCGGTAGTAGTAGTAGCAGCAGCAGCAGCTGTAA
TGGCAATGGCTGCAGCAATAATACGGAAGGCCTCTTCCAAGAAGAGCTCC
GACTAGATCCTGATGTATCAGTGCTCTATTCCACCCATTTACACCTCTTT
CCCCCTACCCTCGTCCTCAGCGCGGCCTGTGACCCTTTGATAGACGAAGG
CATCTTGTTCGTCAAGCGATTGAGAGAGGAGAAAGTGGATGTCCGGCATG
TGATATATCCCGAGATAATTCACGGCTTCTTTTCAGGCTATGATATGTTC
CCGGAGGCGGAAATGGCATTGGGAGAGACTGCAAATTTCTTGAAGGAGGG
CTTGAGATTGTGA
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Synonyms
Publications