NO10G00540.1, NO10G00540.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00540.1
Unique Name	NO10G00540.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1704
Alignment location	chr10:184195..185898 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:184195..185898 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO10G00540.1 vs.

BLAST of NO10G00540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00540	NO10G00540	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00540.1	NO10G00540.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00540.1.cds1	NO10G00540.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:184195..185898-
coding sequence from alignment at chr10:184195..185898-

mRNA sequence

>NO10G00540.1 ID=NO10G00540.1|Name=NO10G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp
ATGGAGCTCATTGGGTCGGTCTTAATGACCTACACCCTTGCCCGCTTCAA
TTCTATCGAGGATTTCAACCTCGCGCACCGCCTTTTAAACAAGCTGCGAT
TCTGGGTACCGCCCAGCGAGGAGGACGTGCAGCGCATAATGAAACCGGGA
AAGACCTCTTCCTCTTCCTCCACGTCCTCTAAGTCCACGACATTGAGCAG
CAAATTCGCACGCCGTTCCAACAAAGACAAGGACAAGGACAAAAATGGCT
GCGGTAGCGCGGGCAAAAAAGCGGGGGAGAAGCTGCACATGACGGCAGCA
GACCGCGTTGAGCAATTGGAATTGAAGCAGGCCTTGGTGCAACAGGGCAT
GTTGCTGCGCTACCGCGACTGGCCTCTACTTGATCGAATTATTATCTTCT
CCTGTTTAGCTGTTTTCATGACGGGCTGGCAAGAGTTGTATCGGTTCGCG
CACCCGAACGTGCGTCTGTTTAAGATTGGCAGTTTATTTACAGGCATTGC
CGCAGCCGTTGCTTTGGGCACGTTGGTGGACCTGGTGTGGAAGCGCAGAG
CATCTCGCACGGCGACGACGGGTGATTTTCACACGGCGGTGGCGTGGATG
ACGGGGATTGTGGCGGTGATCGCCTCATCGACCATGCTGTTGCTGCCAAA
AGATGGCGGGGGTCTGATGACAATGACGTTTCATTTAGACTCTGTCATAC
AGGCGCTGGGGACGCAATGCTATTCGTTCTGTGTGGATATTGTGGGGATA
AGTCCAACGTCTTCTTTTCTTATCGCTGCTGGAGAAGGGGACAAGCAATG
TCCCACCCAAGGATTGACGCGTCTGCTGCTCGTGGTGGTGGCAGCTGTCA
TTGCCATCGCGCACGTCCCTTCTGCCTTGACCGTATCCTTCGCATTCGTC
CATCAATACAAACTCCCTGGGCGGGCGCGTGGAAGCAGACTCGTGCGTAT
TGCCGTTTACTTGGAGCCTTTGCTCTGTCCTCTCTACTGTCTGACTTTCG
TGAAGCCCTTGGGTTTAGGCCTCCTGCAAGACAAGCTCGCCTCCTGTCCC
TCTGCCTCCCCCCCGCCCTCCTGGCTCCTCTCCCTGGGCACAGAGATCGG
TTGGCTGCACATGCAAGTGTGGATGCTCACGTTTCTAATGGTACTGCGGT
TGGTGCTGCTGAGATGGCAACTGCAGACCTACTTAGAGTATGGCTCCGTT
CTTGCCCTCTATCAAGAGCTGCACCGCGCGGGCCCCAAACCTGAAGATAT
TGACGCCCTCGGTGTCCGTCTTCTTTTCCAGCATCGTTTCCAAAAGCTTC
CTCTTATCTGTCTGGAACTCGTCGCTCCGCTCGTCTGGCTGGGGATCTGT
CTATTTTTGTTGGTGAGCAAGTGCTTTCTTCCTTCCTTCCTCGATGGGCT
TGCGGCCTCTGTGATGAATCAAGATGCGGCGGCTGCTTTTCGCTCTCCGA
CCTCCAAACCCTTAGGAGGGAGCATTGTCTCGATCCTGGACAAGCTCCGC
AGCGAGAAAGGGGAGGAAAAGTATATTGATTGGGCATTGGGGAGGGATAT
CATGCATGTTTTATGGGGCTTTGAATGGTGGAGCGCGAGTGAATGGGCGG
ACGCGGTAGGGTTCCTAGCTTGGTGGTCTGTGAGTGCGTGGACGGGTCTG
TACCTTGTGTGTATCGCCTGGAGGATGCTGAATCCGCAGATGGGGGATAG
GTAG

protein sequence of NO10G00540.1

>NO10G00540.1-protein ID=NO10G00540.1-protein|Name=NO10G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MELIGSVLMTYTLARFNSIEDFNLAHRLLNKLRFWVPPSEEDVQRIMKPG
KTSSSSSTSSKSTTLSSKFARRSNKDKDKDKNGCGSAGKKAGEKLHMTAA
DRVEQLELKQALVQQGMLLRYRDWPLLDRIIIFSCLAVFMTGWQELYRFA
HPNVRLFKIGSLFTGIAAAVALGTLVDLVWKRRASRTATTGDFHTAVAWM
TGIVAVIASSTMLLLPKDGGGLMTMTFHLDSVIQALGTQCYSFCVDIVGI
SPTSSFLIAAGEGDKQCPTQGLTRLLLVVVAAVIAIAHVPSALTVSFAFV
HQYKLPGRARGSRLVRIAVYLEPLLCPLYCLTFVKPLGLGLLQDKLASCP
SASPPPSWLLSLGTEIGWLHMQVWMLTFLMVLRLVLLRWQLQTYLEYGSV
LALYQELHRAGPKPEDIDALGVRLLFQHRFQKLPLICLELVAPLVWLGIC
LFLLVSKCFLPSFLDGLAASVMNQDAAAAFRSPTSKPLGGSIVSILDKLR
SEKGEEKYIDWALGRDIMHVLWGFEWWSASEWADAVGFLAWWSVSAWTGL
YLVCIAWRMLNPQMGDR*

mRNA from alignment at chr10:184195..185898-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00540.1 ID=NO10G00540.1|Name=NO10G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1704bp|location=Sequence derived from alignment at chr10:184195..185898- (Nannochloropsis oceanica)
ATGGAGCTCATTGGGTCGGTCTTAATGACCTACACCCTTGCCCGCTTCAA
TTCTATCGAGGATTTCAACCTCGCGCACCGCCTTTTAAACAAGCTGCGAT
TCTGGGTACCGCCCAGCGAGGAGGACGTGCAGCGCATAATGAAACCGGGA
AAGACCTCTTCCTCTTCCTCCACGTCCTCTAAGTCCACGACATTGAGCAG
CAAATTCGCACGCCGTTCCAACAAAGACAAGGACAAGGACAAAAATGGCT
GCGGTAGCGCGGGCAAAAAAGCGGGGGAGAAGCTGCACATGACGGCAGCA
GACCGCGTTGAGCAATTGGAATTGAAGCAGGCCTTGGTGCAACAGGGCAT
GTTGCTGCGCTACCGCGACTGGCCTCTACTTGATCGAATTATTATCTTCT
CCTGTTTAGCTGTTTTCATGACGGGCTGGCAAGAGTTGTATCGGTTCGCG
CACCCGAACGTGCGTCTGTTTAAGATTGGCAGTTTATTTACAGGCATTGC
CGCAGCCGTTGCTTTGGGCACGTTGGTGGACCTGGTGTGGAAGCGCAGAG
CATCTCGCACGGCGACGACGGGTGATTTTCACACGGCGGTGGCGTGGATG
ACGGGGATTGTGGCGGTGATCGCCTCATCGACCATGCTGTTGCTGCCAAA
AGATGGCGGGGGTCTGATGACAATGACGTTTCATTTAGACTCTGTCATAC
AGGCGCTGGGGACGCAATGCTATTCGTTCTGTGTGGATATTGTGGGGATA
AGTCCAACGTCTTCTTTTCTTATCGCTGCTGGAGAAGGGGACAAGCAATG
TCCCACCCAAGGATTGACGCGTCTGCTGCTCGTGGTGGTGGCAGCTGTCA
TTGCCATCGCGCACGTCCCTTCTGCCTTGACCGTATCCTTCGCATTCGTC
CATCAATACAAACTCCCTGGGCGGGCGCGTGGAAGCAGACTCGTGCGTAT
TGCCGTTTACTTGGAGCCTTTGCTCTGTCCTCTCTACTGTCTGACTTTCG
TGAAGCCCTTGGGTTTAGGCCTCCTGCAAGACAAGCTCGCCTCCTGTCCC
TCTGCCTCCCCCCCGCCCTCCTGGCTCCTCTCCCTGGGCACAGAGATCGG
TTGGCTGCACATGCAAGTGTGGATGCTCACGTTTCTAATGGTACTGCGGT
TGGTGCTGCTGAGATGGCAACTGCAGACCTACTTAGAGTATGGCTCCGTT
CTTGCCCTCTATCAAGAGCTGCACCGCGCGGGCCCCAAACCTGAAGATAT
TGACGCCCTCGGTGTCCGTCTTCTTTTCCAGCATCGTTTCCAAAAGCTTC
CTCTTATCTGTCTGGAACTCGTCGCTCCGCTCGTCTGGCTGGGGATCTGT
CTATTTTTGTTGGTGAGCAAGTGCTTTCTTCCTTCCTTCCTCGATGGGCT
TGCGGCCTCTGTGATGAATCAAGATGCGGCGGCTGCTTTTCGCTCTCCGA
CCTCCAAACCCTTAGGAGGGAGCATTGTCTCGATCCTGGACAAGCTCCGC
AGCGAGAAAGGGGAGGAAAAGTATATTGATTGGGCATTGGGGAGGGATAT
CATGCATGTTTTATGGGGCTTTGAATGGTGGAGCGCGAGTGAATGGGCGG
ACGCGGTAGGGTTCCTAGCTTGGTGGTCTGTGAGTGCGTGGACGGGTCTG
TACCTTGTGTGTATCGCCTGGAGGATGCTGAATCCGCAGATGGGGGATAG
GTAG

Coding sequence (CDS) from alignment at chr10:184195..185898-

>NO10G00540.1 ID=NO10G00540.1|Name=NO10G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=1704bp|location=Sequence derived from alignment at chr10:184195..185898- (Nannochloropsis oceanica)
ATGGAGCTCATTGGGTCGGTCTTAATGACCTACACCCTTGCCCGCTTCAA
TTCTATCGAGGATTTCAACCTCGCGCACCGCCTTTTAAACAAGCTGCGAT
TCTGGGTACCGCCCAGCGAGGAGGACGTGCAGCGCATAATGAAACCGGGA
AAGACCTCTTCCTCTTCCTCCACGTCCTCTAAGTCCACGACATTGAGCAG
CAAATTCGCACGCCGTTCCAACAAAGACAAGGACAAGGACAAAAATGGCT
GCGGTAGCGCGGGCAAAAAAGCGGGGGAGAAGCTGCACATGACGGCAGCA
GACCGCGTTGAGCAATTGGAATTGAAGCAGGCCTTGGTGCAACAGGGCAT
GTTGCTGCGCTACCGCGACTGGCCTCTACTTGATCGAATTATTATCTTCT
CCTGTTTAGCTGTTTTCATGACGGGCTGGCAAGAGTTGTATCGGTTCGCG
CACCCGAACGTGCGTCTGTTTAAGATTGGCAGTTTATTTACAGGCATTGC
CGCAGCCGTTGCTTTGGGCACGTTGGTGGACCTGGTGTGGAAGCGCAGAG
CATCTCGCACGGCGACGACGGGTGATTTTCACACGGCGGTGGCGTGGATG
ACGGGGATTGTGGCGGTGATCGCCTCATCGACCATGCTGTTGCTGCCAAA
AGATGGCGGGGGTCTGATGACAATGACGTTTCATTTAGACTCTGTCATAC
AGGCGCTGGGGACGCAATGCTATTCGTTCTGTGTGGATATTGTGGGGATA
AGTCCAACGTCTTCTTTTCTTATCGCTGCTGGAGAAGGGGACAAGCAATG
TCCCACCCAAGGATTGACGCGTCTGCTGCTCGTGGTGGTGGCAGCTGTCA
TTGCCATCGCGCACGTCCCTTCTGCCTTGACCGTATCCTTCGCATTCGTC
CATCAATACAAACTCCCTGGGCGGGCGCGTGGAAGCAGACTCGTGCGTAT
TGCCGTTTACTTGGAGCCTTTGCTCTGTCCTCTCTACTGTCTGACTTTCG
TGAAGCCCTTGGGTTTAGGCCTCCTGCAAGACAAGCTCGCCTCCTGTCCC
TCTGCCTCCCCCCCGCCCTCCTGGCTCCTCTCCCTGGGCACAGAGATCGG
TTGGCTGCACATGCAAGTGTGGATGCTCACGTTTCTAATGGTACTGCGGT
TGGTGCTGCTGAGATGGCAACTGCAGACCTACTTAGAGTATGGCTCCGTT
CTTGCCCTCTATCAAGAGCTGCACCGCGCGGGCCCCAAACCTGAAGATAT
TGACGCCCTCGGTGTCCGTCTTCTTTTCCAGCATCGTTTCCAAAAGCTTC
CTCTTATCTGTCTGGAACTCGTCGCTCCGCTCGTCTGGCTGGGGATCTGT
CTATTTTTGTTGGTGAGCAAGTGCTTTCTTCCTTCCTTCCTCGATGGGCT
TGCGGCCTCTGTGATGAATCAAGATGCGGCGGCTGCTTTTCGCTCTCCGA
CCTCCAAACCCTTAGGAGGGAGCATTGTCTCGATCCTGGACAAGCTCCGC
AGCGAGAAAGGGGAGGAAAAGTATATTGATTGGGCATTGGGGAGGGATAT
CATGCATGTTTTATGGGGCTTTGAATGGTGGAGCGCGAGTGAATGGGCGG
ACGCGGTAGGGTTCCTAGCTTGGTGGTCTGTGAGTGCGTGGACGGGTCTG
TACCTTGTGTGTATCGCCTGGAGGATGCTGAATCCGCAGATGGGGGATAG
GTAG

Synonyms

Publications