NO10G00520.1, NO10G00520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00520.1
Unique NameNO10G00520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1005
Alignment locationchr10:181789..183195 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:181789..183195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00520.1 vs.
Match: XP_005853889.1 (C14-demethylase / sterol 14-demethylase [Nannochloropsis gaditana CCMP526]; EKU22469.1 C14-demethylase / sterol 14-demethylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 576.2 bits (1484), Expect = 6.400e-161
Identity = 286/329 (86.93%), Postives = 306/329 (93.01%), Query Frame = 0 
Query:    1 MLAARLPLDQPWTILAIGVSAAVLVFLLVTLLISSSARKDAPPVIGNAWPVFGHFFLFLKSPINLIKSSYLTYGSVFTVNLFTQKMTFLIGPEAASAFYKASDKELGQDEVYGFMKAVFGEGVVYDSDPKKRNLQMQRTANALKSGRLRTYVEKITEETEVFLKGWGEEGEVDICEALSDLIILTASRCLHGDDVRQELFAEVSKLYNDLDQGITPISVFFPNLPIPSHWKRDAARMEMVKLFSKVIRKRREEGREEAEGRTDILQVFMDIEYKDGSKITDDEVTGLLIALLFAGQHTSSITSSWTALYLAKNKELQERVYREQRAVRG 330
            ++AA LPLDQPWT+ AIG+SAA L F+ V+ L++  +RKD PPVIGNAWP+FGHFFLFLKSPINLIKSSY TYGSVFTVNLFTQ+MTFLIGPEAA+AF+KASDKELGQDEVYGFMKAVFGEGVVYDSDPKKRNLQMQRTANALKSGRLRTYVEKI+EETE F KGWGE GEVDICEALSDLIILTASRCLHGDDVRQELFAEVSKLYNDLDQGITP+SV FPNLPIPSHWKRDAAR EMVKLFSKVI++RR  G  EAE RTDILQVFMDIEYKDGSKITDDEVTGLLIALLFAGQHTSSITSSWTALYLA+NK LQ+RVY EQ A+RG
Sbjct:    7 LIAAHLPLDQPWTLAAIGLSAAFLAFICVSFLLTPRSRKDTPPVIGNAWPLFGHFFLFLKSPINLIKSSYQTYGSVFTVNLFTQRMTFLIGPEAAAAFFKASDKELGQDEVYGFMKAVFGEGVVYDSDPKKRNLQMQRTANALKSGRLRTYVEKISEETEAFFKGWGEAGEVDICEALSDLIILTASRCLHGDDVRQELFAEVSKLYNDLDQGITPVSVLFPNLPIPSHWKRDAARKEMVKLFSKVIQRRRAAGAAEAEARTDILQVFMDIEYKDGSKITDDEVTGLLIALLFAGQHTSSITSSWTALYLAQNKGLQDRVYAEQVAIRG 335
The following BLAST results are available for this feature:
BLAST of NO10G00520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853889.16.400e-16186.93C14-demethylase / sterol 14-demethylase [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00520NO10G00520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00520.1NO10G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00520.1.cds1NO10G00520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00520.1.cds2NO10G00520.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00520.1 ID=NO10G00520.1|Name=NO10G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1005bp
ATGTTGGCCGCCAGGCTGCCCCTCGACCAGCCTTGGACGATCTTGGCGAT
TGGCGTCTCCGCTGCCGTCCTGGTCTTCCTCCTCGTCACCCTCCTCATCT
CCTCCTCCGCGCGAAAAGATGCCCCCCCCGTGATTGGCAACGCCTGGCCA
GTCTTCGGTCATTTTTTCCTCTTCCTTAAGTCGCCCATCAATCTTATCAA
AAGCTCCTACCTCACTTACGGCAGTGTCTTTACCGTCAACCTTTTCACGC
AGAAAATGACGTTCTTGATCGGCCCCGAGGCGGCCAGTGCGTTTTACAAG
GCAAGCGACAAGGAGCTGGGGCAGGACGAGGTGTACGGTTTCATGAAGGC
GGTGTTCGGGGAAGGAGTAGTGTATGACAGTGACCCGAAAAAGAGGAACC
TCCAGATGCAACGGACGGCGAATGCGTTGAAGAGTGGGAGGCTCCGTACG
TACGTGGAGAAGATCACGGAGGAGACGGAGGTGTTCCTGAAGGGATGGGG
GGAGGAAGGGGAGGTGGACATCTGCGAGGCATTGAGTGATTTGATTATTT
TGACGGCGAGTCGGTGCTTGCATGGGGACGATGTGCGGCAGGAGTTGTTT
GCAGAGGTGTCCAAGTTGTACAATGATCTGGACCAGGGGATAACCCCGAT
CTCGGTGTTTTTCCCCAATTTGCCGATTCCCTCGCACTGGAAAAGGGATG
CCGCACGGATGGAGATGGTGAAATTGTTCTCGAAGGTGATCCGGAAGAGG
CGGGAGGAAGGAAGGGAGGAAGCGGAGGGACGGACGGACATCTTGCAGGT
GTTCATGGACATTGAGTACAAGGATGGGAGTAAGATCACGGATGACGAGG
TGACGGGTCTCTTGATCGCTCTGTTGTTTGCAGGACAGCACACGTCATCG
ATCACCTCCTCCTGGACTGCTTTATATCTGGCCAAGAACAAGGAGCTGCA
GGAGAGGGTGTACCGAGAGCAGAGGGCCGTGAGGGGGGGGAACAGGGAGG
GATGA
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protein sequence of NO10G00520.1

>NO10G00520.1-protein ID=NO10G00520.1-protein|Name=NO10G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MLAARLPLDQPWTILAIGVSAAVLVFLLVTLLISSSARKDAPPVIGNAWP
VFGHFFLFLKSPINLIKSSYLTYGSVFTVNLFTQKMTFLIGPEAASAFYK
ASDKELGQDEVYGFMKAVFGEGVVYDSDPKKRNLQMQRTANALKSGRLRT
YVEKITEETEVFLKGWGEEGEVDICEALSDLIILTASRCLHGDDVRQELF
AEVSKLYNDLDQGITPISVFFPNLPIPSHWKRDAARMEMVKLFSKVIRKR
REEGREEAEGRTDILQVFMDIEYKDGSKITDDEVTGLLIALLFAGQHTSS
ITSSWTALYLAKNKELQERVYREQRAVRGGNREG*
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mRNA from alignment at chr10:181789..183195+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00520.1 ID=NO10G00520.1|Name=NO10G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp|location=Sequence derived from alignment at chr10:181789..183195+ (Nannochloropsis oceanica)
ATGTTGGCCGCCAGGCTGCCCCTCGACCAGCCTTGGACGATCTTGGCGAT
TGGTAAGTCATGGGGGTGTAGGGGGCCAGGCATATGAGGGTGCTTGTATG
TCGGCAGATTGGGTGCTCTTCTTCCCATACTCCCGGACACGGTGTGGCAG
CACGAAAGCAGATGGATGAATAGATGCGGCGGCCGCATGAGTGGAGAGCA
AGTGATGTATTCATGTCATTTTTCTGTCAGTGTGTCTTTCCTCGCTTCTC
TTGAATGGGCGCGGGCGCAGAAGTAGTAGCGGTTCCTGGGCACGCCAAGC
CAGCTTCTATGTCATCCGTCGCCTGCCCCCCTTCCCTGACATTCTTTCTT
TTGGCATGTCATCATTTCAAAACCCTGGTTGCCACCCTTATATTTCCGTG
CCCCCTTCTTTTCCTCCCCTCCTCCGTTCTGTCCCTCCTTCCCCTCTCCC
TCAGGCGTCTCCGCTGCCGTCCTGGTCTTCCTCCTCGTCACCCTCCTCAT
CTCCTCCTCCGCGCGAAAAGATGCCCCCCCCGTGATTGGCAACGCCTGGC
CAGTCTTCGGTCATTTTTTCCTCTTCCTTAAGTCGCCCATCAATCTTATC
AAAAGCTCCTACCTCACTTACGGCAGTGTCTTTACCGTCAACCTTTTCAC
GCAGAAAATGACGTTCTTGATCGGCCCCGAGGCGGCCAGTGCGTTTTACA
AGGCAAGCGACAAGGAGCTGGGGCAGGACGAGGTGTACGGTTTCATGAAG
GCGGTGTTCGGGGAAGGAGTAGTGTATGACAGTGACCCGAAAAAGAGGAA
CCTCCAGATGCAACGGACGGCGAATGCGTTGAAGAGTGGGAGGCTCCGTA
CGTACGTGGAGAAGATCACGGAGGAGACGGAGGTGTTCCTGAAGGGATGG
GGGGAGGAAGGGGAGGTGGACATCTGCGAGGCATTGAGTGATTTGATTAT
TTTGACGGCGAGTCGGTGCTTGCATGGGGACGATGTGCGGCAGGAGTTGT
TTGCAGAGGTGTCCAAGTTGTACAATGATCTGGACCAGGGGATAACCCCG
ATCTCGGTGTTTTTCCCCAATTTGCCGATTCCCTCGCACTGGAAAAGGGA
TGCCGCACGGATGGAGATGGTGAAATTGTTCTCGAAGGTGATCCGGAAGA
GGCGGGAGGAAGGAAGGGAGGAAGCGGAGGGACGGACGGACATCTTGCAG
GTGTTCATGGACATTGAGTACAAGGATGGGAGTAAGATCACGGATGACGA
GGTGACGGGTCTCTTGATCGCTCTGTTGTTTGCAGGACAGCACACGTCAT
CGATCACCTCCTCCTGGACTGCTTTATATCTGGCCAAGAACAAGGAGCTG
CAGGAGAGGGTGTACCGAGAGCAGAGGGCCGTGAGGGGGGGGAACAGGGA
GGGATGA
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Coding sequence (CDS) from alignment at chr10:181789..183195+

>NO10G00520.1 ID=NO10G00520.1|Name=NO10G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr10:181789..183195+ (Nannochloropsis oceanica)
ATGTTGGCCGCCAGGCTGCCCCTCGACCAGCCTTGGACGATCTTGGCGAT
TGGCGTCTCCGCTGCCGTCCTGGTCTTCCTCCTCGTCACCCTCCTCATCT
CCTCCTCCGCGCGAAAAGATGCCCCCCCCGTGATTGGCAACGCCTGGCCA
GTCTTCGGTCATTTTTTCCTCTTCCTTAAGTCGCCCATCAATCTTATCAA
AAGCTCCTACCTCACTTACGGCAGTGTCTTTACCGTCAACCTTTTCACGC
AGAAAATGACGTTCTTGATCGGCCCCGAGGCGGCCAGTGCGTTTTACAAG
GCAAGCGACAAGGAGCTGGGGCAGGACGAGGTGTACGGTTTCATGAAGGC
GGTGTTCGGGGAAGGAGTAGTGTATGACAGTGACCCGAAAAAGAGGAACC
TCCAGATGCAACGGACGGCGAATGCGTTGAAGAGTGGGAGGCTCCGTACG
TACGTGGAGAAGATCACGGAGGAGACGGAGGTGTTCCTGAAGGGATGGGG
GGAGGAAGGGGAGGTGGACATCTGCGAGGCATTGAGTGATTTGATTATTT
TGACGGCGAGTCGGTGCTTGCATGGGGACGATGTGCGGCAGGAGTTGTTT
GCAGAGGTGTCCAAGTTGTACAATGATCTGGACCAGGGGATAACCCCGAT
CTCGGTGTTTTTCCCCAATTTGCCGATTCCCTCGCACTGGAAAAGGGATG
CCGCACGGATGGAGATGGTGAAATTGTTCTCGAAGGTGATCCGGAAGAGG
CGGGAGGAAGGAAGGGAGGAAGCGGAGGGACGGACGGACATCTTGCAGGT
GTTCATGGACATTGAGTACAAGGATGGGAGTAAGATCACGGATGACGAGG
TGACGGGTCTCTTGATCGCTCTGTTGTTTGCAGGACAGCACACGTCATCG
ATCACCTCCTCCTGGACTGCTTTATATCTGGCCAAGAACAAGGAGCTGCA
GGAGAGGGTGTACCGAGAGCAGAGGGCCGTGAGGGGGGGGAACAGGGAGG
GATGA
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Synonyms
Publications