NO10G00480.1, NO10G00480.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00480.1
Unique Name	NO10G00480.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2397
Alignment location	chr10:168905..171486 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:168905..171486 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO10G00480.1 vs.

BLAST of NO10G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00480	NO10G00480	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00480.1	NO10G00480.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00480.1.cds1	NO10G00480.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00480.1.cds2	NO10G00480.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO10G00480.1.cds3	NO10G00480.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:168905..171486+
coding sequence from alignment at chr10:168905..171486+

mRNA sequence

>NO10G00480.1 ID=NO10G00480.1|Name=NO10G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2397bp
ATGTTGGCGATCAGCCTTCCCCCCATTATACAACAGCACCAAGCTACCAC
CCATTACAGGCGGGCGGGCTGTTCGGGCCAAGACGCCGGCACGATGAAGG
CCTATGGCAGCGGCAGTCGATCGAATAACAAGAAACCGCGTCGGATCTTG
AGTCATCGAAAAGAAAGAAAGAAAGGTGTCTCACTCAAAAGGCTGGCGGA
AGCCTTAGAGCACGACAGCTTGCTTTGTTGTCGCGCTGTCGCTCCCTCTG
AGGCAACGGCGGCATTGGAAAATGTCCAAGCGGGTCTGCTGGAGCGAGGC
TACATTCTACTGTACCTAGATGATACTTCCCCGTCGCCCCTTTCCCCTAT
CTCCTCCTATTACTCTTCTCCTGTCGCACCTGCGGCAGCTGCAGCAGCTG
CTGCTACTGCTAAGCAATGGCAGCAAGAAGAATACCAAAAATTGCTCGTG
TCCAATCGCGTGGCCGAAAAGTTAGGACAAATTAAGCAGCACTTCGATCG
GCTCGGCATGCCCCAGTCCCACGCCACCAACACCCGAAGCAGCAGCAGGA
GCAGGAGCAGGAGCAGCAGCAACAGCGGCGACAGCAGGATTAGCAGCAGC
GCTAAGATTTCAGACCCCCTGTACATCCATCCCTCCGACGCCATCACCAC
CTTCCACTATCTCGAGCGTATTGGCCGCCTTGTCCTCAAGGCAGCTTCCT
GGGCTCTCTTTCCCCCCACCGATGCCACTCAAACTTTTCTTCCTCGCACT
CCCTCCTCCTCCTCCTCCCCCCGCTCTTCCTCTTCCTCATCATCCTCCTC
CTCCTTCTCCTCTTCCCCCCACTCCTCCTCGTTTTTCTCCACACACAATT
CCCATCAGATCAATCTAGAAGACGAGCTCCTTCCTCCCCTTCCCTCCCCT
CCGTCTCCCCTCTCCCCCTCCTTTTTTCTTCAGACTTCAACTACCCCTGC
CGTTGCTGCGGGCGCAGTGGCAGCAGCAGCAGCGGCCACCAGAAGGAAAG
CCAAGAAGAAAAGGGGGAAACGAGAAGAAGAGGATGATGGTCTGGAAGAA
GAAGAAGAAAAAGGAGGAGAAGAAAGAGGAGGAATAGGAGGATCAGTAAC
AGGAGGAGAAGGGTTCCGATCTCGATTACGGGCGCGTGTGTATCAGGGTG
GGAAGAACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGCGAGGACG
CCGATGCACGATTTGGGGCTGTTAAGTATTGTGGGCGTGATGGGACATGG
GCTCGAGGTGAAGGGAGAATCGAAAGGAGGGCCAGAGGGAGGAGGAAAAT
GGGAGGAGGAGGAGCGAGGAAAGAGAGGGCACGTGGAGAAGGAGTGGAAG
GCGGTGGAGCCCATGTACGAGGAGGAGGAAGAATTGGAGGAGGATGGGTT
TGAGGTAGGGGGGGCAGTTGCCTTGTTGCCGCCGTGGACGGTGCTTGTGT
GTGTTGGTCGGATGCTGGATTACTACTCAGGGGGCGTCCTCAGTGCACCG
GCACGGAGGGTGTTGATTTCAAAAATTGAAAGTTTGAATTTGAATCGGAG
TAATGTGGAGGTGTGTTACTCGGTGCGAGGGAGGGAGGGAGGGCGATTGA
ACCCATACGAGGGAGAAAGGAGGGAAGGAGGAGGAGGAGGAGAGGGGATG
GTTGTGGCGGAGGGAGGAGGAGTTGAAGACAGGAGGGAAGGTGAAGAAGA
GGGGGAGAGAGGCGGCGGGGGAAGGGGGGGAGGAATGAGAAGAGGAGGAG
GAGAAGAAGGGGGAGAAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGAGA
AGTGAGGGAGGGAAGAAGTATTTGGGGAAGCTTGTCATTGATTTGGTTCA
TGATTGTGATGAGGAAGAGGAGGGGGGAATAGAAGGAGCAGGAGCAGAGG
CGGCGTCCGCAGCAGTAGCAGCACTTGAAGATCCGGCGGAGGGCGAGGAG
GAAAAGGGGGCGATAATGGTGGTGGAAAAAGGAGATGAAGAAGGAGTAGC
TGCTGCTGCTGCCACTACAAACGCCGACCTACAATTGAAAGGGGAGGGGG
AACCTGTTGAGAAGGAGGGGAAAAAGTTTAAGAAAGAGAAAGATGAGGAA
GAGGTTGAGGACGAAGTGTTAGAGGTAGGAGTAGGCGGCTGTGCGGCGAG
GCGCAGGTATGGAGCGCCAACAGCAGCAGCAGCAGCAGCAGCTCCGGAAA
TAGTCGGAGGAAGAGAAAGGGAGAGGGAGGGAAAGAAGGAAGGGGAGTGG
AAGGAGGAGGAAAATGATGATGCGTCCAGGTGCTTGGTGAATGATTTCGG
GGGGATGAAGGACGGGATAGAAGAAAGAGGGGAGGAGAGGAGAGTAGGGG
AGGCCATGTCGACATTGCAGTGGGAGGTGGAAGAGGGTGAAGAATAA

protein sequence of NO10G00480.1

>NO10G00480.1-protein ID=NO10G00480.1-protein|Name=NO10G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=799bp
MLAISLPPIIQQHQATTHYRRAGCSGQDAGTMKAYGSGSRSNNKKPRRIL
SHRKERKKGVSLKRLAEALEHDSLLCCRAVAPSEATAALENVQAGLLERG
YILLYLDDTSPSPLSPISSYYSSPVAPAAAAAAAATAKQWQQEEYQKLLV
SNRVAEKLGQIKQHFDRLGMPQSHATNTRSSSRSRSRSSSNSGDSRISSS
AKISDPLYIHPSDAITTFHYLERIGRLVLKAASWALFPPTDATQTFLPRT
PSSSSSPRSSSSSSSSSSFSSSPHSSSFFSTHNSHQINLEDELLPPLPSP
PSPLSPSFFLQTSTTPAVAAGAVAAAAAATRRKAKKKRGKREEEDDGLEE
EEEKGGEERGGIGGSVTGGEGFRSRLRARVYQGGKNGGREGGREGGRART
PMHDLGLLSIVGVMGHGLEVKGESKGGPEGGGKWEEEERGKRGHVEKEWK
AVEPMYEEEEELEEDGFEVGGAVALLPPWTVLVCVGRMLDYYSGGVLSAP
ARRVLISKIESLNLNRSNVEVCYSVRGREGGRLNPYEGERREGGGGGEGM
VVAEGGGVEDRREGEEEGERGGGGRGGGMRRGGGEEGGEGGGGGGGRGGR
SEGGKKYLGKLVIDLVHDCDEEEEGGIEGAGAEAASAAVAALEDPAEGEE
EKGAIMVVEKGDEEGVAAAAATTNADLQLKGEGEPVEKEGKKFKKEKDEE
EVEDEVLEVGVGGCAARRRYGAPTAAAAAAAPEIVGGREREREGKKEGEW
KEEENDDASRCLVNDFGGMKDGIEERGEERRVGEAMSTLQWEVEEGEE*

mRNA from alignment at chr10:168905..171486+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00480.1 ID=NO10G00480.1|Name=NO10G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2582bp|location=Sequence derived from alignment at chr10:168905..171486+ (Nannochloropsis oceanica)
ATGTTGGCGATCAGCCTTCCCCCCATTATACAACAGCACCAAGCTACCAC
CCATTACAGGCGGGCGGGCTGTTCGGGGTGAGGCTACCGCTGTTGATGCA
GTCCTGCTACCGCTGCTGCTAGTGTTGTACTCATTTAACATCTTGGCTAC
CTCCCCCCACTTCCTCCCTCCCTTAGCCAAGACGCCGGCACGATGAAGGC
CTATGGCAGCGGCAGTCGATCGAATAACAAGAAACCGCGTCGGATCTTGA
GTCATCGAAAAGAAAGAAAGAAAGGTGTCTCACTCAAAAGGCTGGCGGAA
GCCTTAGAGCACGACAGCTTGCTTTGTTGTCGCGCTGTCGCTCCCTCTGA
GGCAACGGCGGCATTGGAAAATGTCCAAGCGGGTCTGCTGGAGCGAGGCT
ACATTCTACTGTACCTAGATGATACTTCCCCGTCGCCCCTTTCCCCTATC
TCCTCCTATTACTCTTCTCCTGTCGCACCTGCGGCAGCTGCAGCAGCTGC
TGCTACTGCTAAGCAATGGCAGCAAGAAGAATACCAAAAATTGCTCGTGT
CCAATCGCGTGGCCGAAAAGTTAGGACAAATTAAGCAGCACTTCGATCGG
CTCGGCATGCCCCAGTCCCACGCCACCAACACCCGAAGCAGCAGCAGGAG
CAGGAGCAGGAGCAGCAGCAACAGCGGCGACAGCAGGATTAGCAGCAGCG
CTAAGATTTCAGACCCCCTGTACATCCATCCCTCCGACGCCATCACCACC
TTCCACTATCTCGAGCGTATTGGCCGCCTTGTCCTCAAGGCAGCTTCCTG
GGCTCTCTTTCCCCCCACCGATGCCACTCAAACTTTTCTTCCTCGCACTC
CCTCCTCCTCCTCCTCCCCCCGCTCTTCCTCTTCCTCATCATCCTCCTCC
TCCTTCTCCTCTTCCCCCCACTCCTCCTCGTTTTTCTCCACACACAATTC
CCATCAGATCAATCTAGAAGACGAGCTCCTTCCTCCCCTTCCCTCCCCTC
CGTCTCCCCTCTCCCCCTCCTTTTTTCTTCAGACTTCAACTACCCCTGCC
GTTGCTGCGGGCGCAGTGGCAGCAGCAGCAGCGGCCACCAGAAGGAAAGC
CAAGAAGAAAAGGGGGAAACGAGAAGAAGAGGATGATGGTCTGGAAGAAG
AAGAAGAAAAAGGAGGAGAAGAAAGAGGAGGAATAGGAGGATCAGTAACA
GGAGGAGAAGGGTTCCGATCTCGATTACGGGCGCGTGTGTATCAGGGTGG
GAAGAACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGCGAGGACGC
CGATGCACGATTTGGGGCTGTTAAGTATTGTGGGCGTGATGGGACATGGG
CTCGAGGTGAAGGGAGAATCGAAAGGAGGGCCAGAGGGAGGAGGAAAATG
GGAGGAGGAGGAGCGAGGAAAGAGAGGGCACGTGGAGAAGGAGTGGAAGG
CGGTGGAGCCCATGTACGAGGAGGAGGAAGAATTGGAGGAGGATGGGTTT
GAGGTAGGGGGGGCAGTTGCCTTGTTGCCGCCGTGGACGGTGCTTGTGTG
TGTTGGTCGGATGCTGGATTACTACTCAGGGGGCGTCCTCAGTGCACCGG
CACGGAGGGTGTTGATTTCAAAAATTGAAAGTTTGAATTTGAATCGGAGT
AATGTGGAGGTGTGTTACTCGGTGCGAGGGAGGGAGGGAGGGCGATTGAA
CCCATACGAGGTCCGTGAACGGGTGTGGAATATTGCGCCATTATATCGGG
ATCCGACAAAGGACAAGGAGGTGATGAATGTGGAGTGCTATGAGAGGGAG
AAAGGAGGGAAGGAGGAGGAGGAGGAGAGGGGATGGTTGTGGCGGAGGGA
GGAGGAGTTGAAGACAGGAGGGAAGGTGAAGAAGAGGGGGAGAGAGGCGG
CGGGGGAAGGGGGGGAGGAATGAGAAGAGGAGGAGGAGAAGAAGGGGGAG
AAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGAGAAGTGAGGGAGGGAAG
AAGTATTTGGGGAAGCTTGTCATTGATTTGGTTCATGATTGTGATGAGGA
AGAGGAGGGGGGAATAGAAGGAGCAGGAGCAGAGGCGGCGTCCGCAGCAG
TAGCAGCACTTGAAGATCCGGCGGAGGGCGAGGAGGAAAAGGGGGCGATA
ATGGTGGTGGAAAAAGGAGATGAAGAAGGAGTAGCTGCTGCTGCTGCCAC
TACAAACGCCGACCTACAATTGAAAGGGGAGGGGGAACCTGTTGAGAAGG
AGGGGAAAAAGTTTAAGAAAGAGAAAGATGAGGAAGAGGTTGAGGACGAA
GTGTTAGAGGTAGGAGTAGGCGGCTGTGCGGCGAGGCGCAGGTATGGAGC
GCCAACAGCAGCAGCAGCAGCAGCAGCTCCGGAAATAGTCGGAGGAAGAG
AAAGGGAGAGGGAGGGAAAGAAGGAAGGGGAGTGGAAGGAGGAGGAAAAT
GATGATGCGTCCAGGTGCTTGGTGAATGATTTCGGGGGGATGAAGGACGG
GATAGAAGAAAGAGGGGAGGAGAGGAGAGTAGGGGAGGCCATGTCGACAT
TGCAGTGGGAGGTGGAAGAGGGTGAAGAATAA

Coding sequence (CDS) from alignment at chr10:168905..171486+

>NO10G00480.1 ID=NO10G00480.1|Name=NO10G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=2397bp|location=Sequence derived from alignment at chr10:168905..171486+ (Nannochloropsis oceanica)
ATGTTGGCGATCAGCCTTCCCCCCATTATACAACAGCACCAAGCTACCAC
CCATTACAGGCGGGCGGGCTGTTCGGGCCAAGACGCCGGCACGATGAAGG
CCTATGGCAGCGGCAGTCGATCGAATAACAAGAAACCGCGTCGGATCTTG
AGTCATCGAAAAGAAAGAAAGAAAGGTGTCTCACTCAAAAGGCTGGCGGA
AGCCTTAGAGCACGACAGCTTGCTTTGTTGTCGCGCTGTCGCTCCCTCTG
AGGCAACGGCGGCATTGGAAAATGTCCAAGCGGGTCTGCTGGAGCGAGGC
TACATTCTACTGTACCTAGATGATACTTCCCCGTCGCCCCTTTCCCCTAT
CTCCTCCTATTACTCTTCTCCTGTCGCACCTGCGGCAGCTGCAGCAGCTG
CTGCTACTGCTAAGCAATGGCAGCAAGAAGAATACCAAAAATTGCTCGTG
TCCAATCGCGTGGCCGAAAAGTTAGGACAAATTAAGCAGCACTTCGATCG
GCTCGGCATGCCCCAGTCCCACGCCACCAACACCCGAAGCAGCAGCAGGA
GCAGGAGCAGGAGCAGCAGCAACAGCGGCGACAGCAGGATTAGCAGCAGC
GCTAAGATTTCAGACCCCCTGTACATCCATCCCTCCGACGCCATCACCAC
CTTCCACTATCTCGAGCGTATTGGCCGCCTTGTCCTCAAGGCAGCTTCCT
GGGCTCTCTTTCCCCCCACCGATGCCACTCAAACTTTTCTTCCTCGCACT
CCCTCCTCCTCCTCCTCCCCCCGCTCTTCCTCTTCCTCATCATCCTCCTC
CTCCTTCTCCTCTTCCCCCCACTCCTCCTCGTTTTTCTCCACACACAATT
CCCATCAGATCAATCTAGAAGACGAGCTCCTTCCTCCCCTTCCCTCCCCT
CCGTCTCCCCTCTCCCCCTCCTTTTTTCTTCAGACTTCAACTACCCCTGC
CGTTGCTGCGGGCGCAGTGGCAGCAGCAGCAGCGGCCACCAGAAGGAAAG
CCAAGAAGAAAAGGGGGAAACGAGAAGAAGAGGATGATGGTCTGGAAGAA
GAAGAAGAAAAAGGAGGAGAAGAAAGAGGAGGAATAGGAGGATCAGTAAC
AGGAGGAGAAGGGTTCCGATCTCGATTACGGGCGCGTGTGTATCAGGGTG
GGAAGAACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGCGAGGACG
CCGATGCACGATTTGGGGCTGTTAAGTATTGTGGGCGTGATGGGACATGG
GCTCGAGGTGAAGGGAGAATCGAAAGGAGGGCCAGAGGGAGGAGGAAAAT
GGGAGGAGGAGGAGCGAGGAAAGAGAGGGCACGTGGAGAAGGAGTGGAAG
GCGGTGGAGCCCATGTACGAGGAGGAGGAAGAATTGGAGGAGGATGGGTT
TGAGGTAGGGGGGGCAGTTGCCTTGTTGCCGCCGTGGACGGTGCTTGTGT
GTGTTGGTCGGATGCTGGATTACTACTCAGGGGGCGTCCTCAGTGCACCG
GCACGGAGGGTGTTGATTTCAAAAATTGAAAGTTTGAATTTGAATCGGAG
TAATGTGGAGGTGTGTTACTCGGTGCGAGGGAGGGAGGGAGGGCGATTGA
ACCCATACGAGGGAGAAAGGAGGGAAGGAGGAGGAGGAGGAGAGGGGATG
GTTGTGGCGGAGGGAGGAGGAGTTGAAGACAGGAGGGAAGGTGAAGAAGA
GGGGGAGAGAGGCGGCGGGGGAAGGGGGGGAGGAATGAGAAGAGGAGGAG
GAGAAGAAGGGGGAGAAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGAGA
AGTGAGGGAGGGAAGAAGTATTTGGGGAAGCTTGTCATTGATTTGGTTCA
TGATTGTGATGAGGAAGAGGAGGGGGGAATAGAAGGAGCAGGAGCAGAGG
CGGCGTCCGCAGCAGTAGCAGCACTTGAAGATCCGGCGGAGGGCGAGGAG
GAAAAGGGGGCGATAATGGTGGTGGAAAAAGGAGATGAAGAAGGAGTAGC
TGCTGCTGCTGCCACTACAAACGCCGACCTACAATTGAAAGGGGAGGGGG
AACCTGTTGAGAAGGAGGGGAAAAAGTTTAAGAAAGAGAAAGATGAGGAA
GAGGTTGAGGACGAAGTGTTAGAGGTAGGAGTAGGCGGCTGTGCGGCGAG
GCGCAGGTATGGAGCGCCAACAGCAGCAGCAGCAGCAGCAGCTCCGGAAA
TAGTCGGAGGAAGAGAAAGGGAGAGGGAGGGAAAGAAGGAAGGGGAGTGG
AAGGAGGAGGAAAATGATGATGCGTCCAGGTGCTTGGTGAATGATTTCGG
GGGGATGAAGGACGGGATAGAAGAAAGAGGGGAGGAGAGGAGAGTAGGGG
AGGCCATGTCGACATTGCAGTGGGAGGTGGAAGAGGGTGAAGAATAA

Synonyms

Publications