NO10G00420.1, NO10G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00420.1
Unique NameNO10G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1443
Alignment locationchr10:144233..145803 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:144233..145803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00420.1 vs.
Match: EWM25275.1 (methyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 127.5 bits (319), Expect = 1.100e-25
Identity = 92/208 (44.23%), Postives = 119/208 (57.21%), Query Frame = 0 
Query:  171 RGRKGVIDQVLILGSGMDTRAWRLPLPDVTIIEVDVAAVLQAKEQVLRLVEKEEKQQLQLQQLQQQRQQQQQQQQQQNGTSPASSIIQLTVKKRLIIPADFSSSSSSSSSSSSSSSSSSSSSSSSSSFIPTTTTTTTPSTSSSPPPSWSAQVQMVLSSTSRPLAIILEGLLMYLSEEEVIKVVREAGRLAAAKGSRIGFSLVDRQSVR 379
            RGR+  + QVLILGSGMDTRAWRLPLPDVT+IEVDV AV++AKE+VL+ ++++E Q                        SP SS+ QLTVK R++IPA+F                                T TTP +  S P SW   V+  L +  +PL I+LEGLLMYL E+ V +V+ +AGR+  A GS IG SLVDR+SV+
Sbjct:    7 RGRREKVTQVLILGSGMDTRAWRLPLPDVTVIEVDVPAVVRAKEEVLKRLQEKEGQL-----------PPPSPSSSPPEISPPSSLTQLTVKARIVIPANF--------------------------------TATTPPSLPSSPSSWVQAVRAGLPAPEKPLVILLEGLLMYLPEDAVKEVLTQAGRMGEAPGSVIGISLVDRESVK 171
The following BLAST results are available for this feature:
BLAST of NO10G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25275.11.100e-2544.23methyltransferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00420NO10G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00420.1NO10G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00420.1.cds1NO10G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00420.1.cds2NO10G00420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00420.1 ID=NO10G00420.1|Name=NO10G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1443bp
CCTTCCCTCGCTCCCTCCCCTCCAATCTCACTCCCCCAGATGGTGCCCGC
GGCGTCTTCCTCCTCCTTCTCCTACTACTACTACTTCTGCTCCTTCTCCT
CCTCTTCACACCGCCGCACTAGCCCTGTCCGACTCCCCTTCCTCATCCCA
CCCCTCCTCTTCCTCACCATCGCACACCACTCCACCTGCTCCGCCTTCGC
CTCCCCCTCCTCCACCACGACCCCCTCCTCTACTTCCTCGCTCTCCTCCT
CTTCCTCTTCCTCCTCCTCCTTCTTTACTCGCCTCTTCTCCCCCCCTCCT
CCTCCACTCTTCGCAGGCGTGGATCCTTCCTCCCCCATCCCCTTCTCCTC
TCGTCAAATGTCCGCTGCGAGAGCCATCGAAGCCGAGAGACCATCGACTG
ACCGTCTCTTCCACGACAATTTATCCCAGCATTTCGCGGGAAAAGAGGCC
ATGCAGCAAGCTCGGGAGAGGATGAGGGGAGGAGGGGGGGAGGGAGGGGA
GGGAGTCAAGGGACCGTGGCGGTGGGTGATGAGAGGGATAGGCGGAGGAA
GAGGGAGGAAGGGAGTGATTGACCAAGTTCTCATTTTGGGGAGTGGGATG
GATACGCGGGCGTGGCGACTGCCTTTGCCCGACGTGACTATCATAGAGGT
TGATGTTGCCGCGGTTCTTCAGGCCAAAGAGCAGGTTCTACGCCTCGTGG
AGAAAGAGGAAAAGCAGCAGCTGCAGCTGCAGCAGCTGCAACAACAGCGG
CAACAGCAGCAGCAACAGCAGCAGCAGCAGAACGGGACCTCGCCCGCTTC
CTCCATCATCCAACTCACCGTCAAGAAGCGCCTCATCATCCCTGCTGACT
TTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTTCATCCCCACCACCACCAC
TACAACCACTCCCTCAACCTCTTCCTCTCCCCCTCCCTCCTGGTCTGCGC
AAGTCCAGATGGTGTTATCCTCCACCTCCCGTCCCCTTGCCATCATCCTC
GAAGGCCTGCTTATGTACCTGTCTGAGGAGGAAGTGATAAAGGTTGTCAG
GGAGGCAGGGCGATTGGCCGCAGCCAAAGGGAGTCGTATCGGGTTTAGCT
TGGTGGACAGACAAAGCGTGAGAGACGCGCAGAAATCGAACTCGCCTTTG
AGAAGAACGTGGCTGTGGGGTTGCGATGAAGACGAAGCAGCCGAATTTTT
TGCAAGGACACTGTCGTCCTCGTCAGAGCAAGGAGGGAGGACGTGGAAAG
TGACGCATGTGACGAGGGTGGGGAAGAAGGGGGGTTATCCGAAAGGAGCC
AATTATGGGTGTTGGAAAGATGGAGGGAAAGGTGGGGGGAAAGGAAAGAG
AAAGGGAAAAACATTGTATGTGCTAGCGGAGCGGGTGAGGTGA
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protein sequence of NO10G00420.1

>NO10G00420.1-protein ID=NO10G00420.1-protein|Name=NO10G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MVPAASSSSFSYYYYFCSFSSSSHRRTSPVRLPFLIPPLLFLTIAHHSTC
SAFASPSSTTTPSSTSSLSSSSSSSSSFFTRLFSPPPPPLFAGVDPSSPI
PFSSRQMSAARAIEAERPSTDRLFHDNLSQHFAGKEAMQQARERMRGGGG
EGGEGVKGPWRWVMRGIGGGRGRKGVIDQVLILGSGMDTRAWRLPLPDVT
IIEVDVAAVLQAKEQVLRLVEKEEKQQLQLQQLQQQRQQQQQQQQQQNGT
SPASSIIQLTVKKRLIIPADFSSSSSSSSSSSSSSSSSSSSSSSSSSFIP
TTTTTTTPSTSSSPPPSWSAQVQMVLSSTSRPLAIILEGLLMYLSEEEVI
KVVREAGRLAAAKGSRIGFSLVDRQSVRDAQKSNSPLRRTWLWGCDEDEA
AEFFARTLSSSSEQGGRTWKVTHVTRVGKKGGYPKGANYGCWKDGGKGGG
KGKRKGKTLYVLAERVR*
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mRNA from alignment at chr10:144233..145803-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00420.1 ID=NO10G00420.1|Name=NO10G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1571bp|location=Sequence derived from alignment at chr10:144233..145803- (Nannochloropsis oceanica)
CCTTCCCTCGCTCCCTCCCCTCCAATCTCACTCCCCCAGATGGTGCCCGC
GGCGTCTTCCTCCTCCTTCTCCTACTACTACTACTTCTGCTCCTTCTCCT
CCTCTTCACACCGCCGCACTAGCCCTGTCCGACTCCCCTTCCTCATCCCA
CCCCTCCTCTTCCTCACCATCGCACACCACTCCACCTGCTCCGCCTTCGC
CTCCCCCTCCTCCACCACGACCCCCTCCTCTACTTCCTCGCTCTCCTCCT
CTTCCTCTTCCTCCTCCTCCTTCTTTACTCGCCTCTTCTCCCCCCCTCCT
CCTCCACTCTTCGCAGGCGTGGATCCTTCCTCCCCCATCCCCTTCTCCTC
TCGTCAAATGTCCGCTGCGAGAGCCATCGAAGCCGAGAGACCATCGACTG
ACCGTCTCTTCCACGACAATTTATCCCAGCATTTCGCGGGAAAAGAGGCC
ATGCAGCAAGCTCGGGAGAGGATGAGGGGAGGAGGGGGGGAGGGAGGGGA
GGGAGTCAAGGGGTGGGGAGGAAGATAGCTGTCAGAACACGATATTTCGA
TGATTTTTTACAGGACTGCTGTCTTACCCAGGGGATATCGGAGAAGGGGA
GCAGGGGTGATGGACCAGCGTGGCTGTCGTTGCTTTTCAGACCGTGGCGG
TGGGTGATGAGAGGGATAGGCGGAGGAAGAGGGAGGAAGGGAGTGATTGA
CCAAGTTCTCATTTTGGGGAGTGGGATGGATACGCGGGCGTGGCGACTGC
CTTTGCCCGACGTGACTATCATAGAGGTTGATGTTGCCGCGGTTCTTCAG
GCCAAAGAGCAGGTTCTACGCCTCGTGGAGAAAGAGGAAAAGCAGCAGCT
GCAGCTGCAGCAGCTGCAACAACAGCGGCAACAGCAGCAGCAACAGCAGC
AGCAGCAGAACGGGACCTCGCCCGCTTCCTCCATCATCCAACTCACCGTC
AAGAAGCGCCTCATCATCCCTGCTGACTTTTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCTTTCATCCCCACCACCACCACTACAACCACTCCCTCAACCTCT
TCCTCTCCCCCTCCCTCCTGGTCTGCGCAAGTCCAGATGGTGTTATCCTC
CACCTCCCGTCCCCTTGCCATCATCCTCGAAGGCCTGCTTATGTACCTGT
CTGAGGAGGAAGTGATAAAGGTTGTCAGGGAGGCAGGGCGATTGGCCGCA
GCCAAAGGGAGTCGTATCGGGTTTAGCTTGGTGGACAGACAAAGCGTGAG
AGACGCGCAGAAATCGAACTCGCCTTTGAGAAGAACGTGGCTGTGGGGTT
GCGATGAAGACGAAGCAGCCGAATTTTTTGCAAGGACACTGTCGTCCTCG
TCAGAGCAAGGAGGGAGGACGTGGAAAGTGACGCATGTGACGAGGGTGGG
GAAGAAGGGGGGTTATCCGAAAGGAGCCAATTATGGGTGTTGGAAAGATG
GAGGGAAAGGTGGGGGGAAAGGAAAGAGAAAGGGAAAAACATTGTATGTG
CTAGCGGAGCGGGTGAGGTGA
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Coding sequence (CDS) from alignment at chr10:144233..145803-

>NO10G00420.1 ID=NO10G00420.1|Name=NO10G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=1404bp|location=Sequence derived from alignment at chr10:144233..145803- (Nannochloropsis oceanica)
ATGGTGCCCGCGGCGTCTTCCTCCTCCTTCTCCTACTACTACTACTTCTG
CTCCTTCTCCTCCTCTTCACACCGCCGCACTAGCCCTGTCCGACTCCCCT
TCCTCATCCCACCCCTCCTCTTCCTCACCATCGCACACCACTCCACCTGC
TCCGCCTTCGCCTCCCCCTCCTCCACCACGACCCCCTCCTCTACTTCCTC
GCTCTCCTCCTCTTCCTCTTCCTCCTCCTCCTTCTTTACTCGCCTCTTCT
CCCCCCCTCCTCCTCCACTCTTCGCAGGCGTGGATCCTTCCTCCCCCATC
CCCTTCTCCTCTCGTCAAATGTCCGCTGCGAGAGCCATCGAAGCCGAGAG
ACCATCGACTGACCGTCTCTTCCACGACAATTTATCCCAGCATTTCGCGG
GAAAAGAGGCCATGCAGCAAGCTCGGGAGAGGATGAGGGGAGGAGGGGGG
GAGGGAGGGGAGGGAGTCAAGGGACCGTGGCGGTGGGTGATGAGAGGGAT
AGGCGGAGGAAGAGGGAGGAAGGGAGTGATTGACCAAGTTCTCATTTTGG
GGAGTGGGATGGATACGCGGGCGTGGCGACTGCCTTTGCCCGACGTGACT
ATCATAGAGGTTGATGTTGCCGCGGTTCTTCAGGCCAAAGAGCAGGTTCT
ACGCCTCGTGGAGAAAGAGGAAAAGCAGCAGCTGCAGCTGCAGCAGCTGC
AACAACAGCGGCAACAGCAGCAGCAACAGCAGCAGCAGCAGAACGGGACC
TCGCCCGCTTCCTCCATCATCCAACTCACCGTCAAGAAGCGCCTCATCAT
CCCTGCTGACTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTTCATCCCC
ACCACCACCACTACAACCACTCCCTCAACCTCTTCCTCTCCCCCTCCCTC
CTGGTCTGCGCAAGTCCAGATGGTGTTATCCTCCACCTCCCGTCCCCTTG
CCATCATCCTCGAAGGCCTGCTTATGTACCTGTCTGAGGAGGAAGTGATA
AAGGTTGTCAGGGAGGCAGGGCGATTGGCCGCAGCCAAAGGGAGTCGTAT
CGGGTTTAGCTTGGTGGACAGACAAAGCGTGAGAGACGCGCAGAAATCGA
ACTCGCCTTTGAGAAGAACGTGGCTGTGGGGTTGCGATGAAGACGAAGCA
GCCGAATTTTTTGCAAGGACACTGTCGTCCTCGTCAGAGCAAGGAGGGAG
GACGTGGAAAGTGACGCATGTGACGAGGGTGGGGAAGAAGGGGGGTTATC
CGAAAGGAGCCAATTATGGGTGTTGGAAAGATGGAGGGAAAGGTGGGGGG
AAAGGAAAGAGAAAGGGAAAAACATTGTATGTGCTAGCGGAGCGGGTGAG
GTGA
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Synonyms
Publications