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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:141729..144044 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00410.1 vs.
Match: XP_009036194.1 (hypothetical protein AURANDRAFT_63687 [Aureococcus anophagefferens]; EGB09069.1 hypothetical protein AURANDRAFT_63687 [Aureococcus anophagefferens]) HSP 1 Score: 201.4 bits (511), Expect = 9.700e-48 Identity = 228/802 (28.43%), Postives = 326/802 (40.65%), Query Frame = 0
Query: 3 GFSLAQTM-ASMQSHTAALEKESTPLPQQQQQQQHMQASAARGATGEEPFT-FLARTLDKVRTMILAELPATV--WPKVEIEARLGIFCHQGAA-------EDERVFPAFPGVGVIELGPEGQGGPPTRFFSGVTRGAFEQMKACVAGLGGGEGKTVEASHLHEIVYTYADKRRLRCPAQNPGSGMLESKRKILDINVALPAASYDLRLTVAVE-----NEEEGVQGIMKGWESRRAKIRTSFKDLLGNSTLGPWSLDFTCVTTLEGDG-----------GGGGGGGGGGRGRGLDEESTEVEMELEAEVLAGWLEK---GGEEADKETSRLASRLLDTLKRLNPLEKASPGNVLVPLMMDRGVGGAAGGAPVQEALRQRCVAVLQAAGGGGGGGRHMKFPGTMPVNLCRKDVATVQSGGYWLAEKTDGVRYLLFVLGGINNNQASSYLMDRSMAIFTFPGADGLGQALPAGTVLDGELVYNCLTSSYVFLVFDCLFWGAEPMVGLPFSQRLKAIHAKVLPVYEQGKAGGRLVPGKHLPVVGKKFYRRMDIGKLFERVKEEEGHRVYRDEGCITSY-------LAYLGLGPKK-------EAAGKEEVEEEDGE------AERVWPVRDCLSRYYHKTDGIVFQPDKPYQCSTDTSFFKWKWMDTVTIDFAITPTPYRVVCGAGAAGSL------------DLTRQIRLEPLDLMRLRADMSAAH---CRIAELGFSVETGFWTYKMLRPDKTDPNYFTTVCTTMLELAEGMEEEEIQYRMMVGEAADDDWGGQVGRMRRAA 740
G SL + + A S T+ + + + ++ ++ S RG P +AR+L R L + P V VE+EARLG+ C + AA R + G G + L G +F GV+ AF + + G + + E + +D+ R GS LE K + + A P+ASYDLRL A E + + + W RR K R S+ ++ + L W +D T VT+L GG GG G G + EVE+EL E A WL GGE+A E+ LA L+ L P+E+ R A ++A + AV G FPG+MP R+ V +Q Y++AEK+DG R LL +G + + + L+DR + T LP G +LDGE+V N T + FLVFD L G + GL F +R G G L +P G R + G V E+ R + D G + L L + PK+ AA V +D RV+ RD +R+ H +DG+VF P PY TD KWKW D +T+D + GAG G L D ++ + L D RLRAD+ A +AELG E+G W Y RPDK N+F +T+L AE E E++YR+ + DD+ ++ RAA
Sbjct: 18 GLSLLENLTAKSSSLTSDMRQHKREVAAKEGAEKARAESVLRGV----PIVGAIARSLGAARAR-LRDDPGAVPGGAAVEVEARLGVACERYAALGGGDDGAGRRYVASRRGCGAVPLD-----GCDAKFCPGVSEIAFRDVAENLRRYAGKRRAPLAVAETVESTFG-SDESPYRLVVA-AGSKRLEKKAAVDVFDFAFPSASYDLRLQTAGEAPAPWDAQHLPRPEKPAWTWRRVKKRCSY--VVQSGPLAAWRVDCTEVTSLAYPVDALTTDMALGLGGAGGAVPGTPGPATTTVTHEVEVELAREATARWLASSAGGGEDA--ESRALAESLVQLFAVLAPIERCD----------SRPKPSCAASPTARQAAKDALRAV--------AAGARRSFPGSMPCGFARRHVTMIQREPYFVAEKSDGERRLL--VGVDDGARRGAALVDRKAQVETVRLHGAALAGLPPGAILDGEVVQNLATGAPAFLVFDVLHDGRRDVSGLDFEERFF------------GSLAGPLRGCLAVPCPG----RDGEPGA----VSPEDEDRAFADFGTDAAEPPAELAELPVLRVVPKRFVPPKRIGAAVLARVSRDDDVNGAVRYGARVY--RDGAARF-HLSDGLVFVPGGPYVAGTDPKLLKWKWTDGLTVDLEVR--------GAGKGGDLSFFAVDDDGDAVDCSKHVALPEHDAARLRADVKATPKGTATVAELGLHAESGLWEYHGFRPDKATGNHFDVFLSTLLLHAESPSEHELEYRLRTDDPTKDDFAKRMDAATRAA 752
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00410.1 ID=NO10G00410.1|Name=NO10G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2316bp ACAGCGACTCTTGGTTATACCACAGTCAGAATGAGTGGCTTTTCCTTGGC CCAAACGATGGCGTCTATGCAATCACACACGGCCGCCCTAGAGAAGGAAT CCACCCCGCTTCCCCAGCAACAGCAACAGCAGCAGCACATGCAGGCCTCT GCCGCCCGAGGCGCAACAGGGGAAGAGCCCTTCACCTTCCTGGCCCGTAC GCTCGACAAGGTCCGCACCATGATCTTGGCGGAGCTTCCAGCAACTGTGT GGCCCAAGGTGGAAATCGAGGCACGCCTGGGCATTTTTTGCCATCAGGGC GCAGCAGAGGATGAGAGGGTCTTTCCAGCCTTTCCGGGGGTGGGGGTGAT TGAGCTAGGGCCTGAAGGCCAAGGAGGGCCACCGACCCGGTTCTTCTCTG GGGTCACACGCGGGGCGTTTGAGCAAATGAAGGCGTGTGTGGCGGGCTTG GGAGGAGGGGAAGGGAAAACGGTGGAAGCGAGTCATCTCCATGAAATCGT GTATACGTACGCCGACAAGCGGCGGCTTCGGTGCCCAGCGCAAAATCCAG GATCAGGGATGCTAGAGAGTAAGCGAAAAATATTAGATATCAATGTTGCC TTGCCCGCGGCTTCATATGACTTGAGATTGACCGTGGCAGTGGAGAACGA GGAGGAAGGGGTGCAAGGGATCATGAAAGGGTGGGAATCGCGCCGGGCCA AGATTCGAACGAGCTTTAAAGATTTGTTGGGAAACAGCACACTGGGACCT TGGTCTCTAGACTTTACGTGCGTCACAACCTTGGAGGGGGATGGAGGAGG AGGAGGAGGAGGAGGAGGAGGAGGAAGGGGGCGAGGACTGGATGAGGAAT CGACGGAGGTGGAGATGGAGTTGGAGGCGGAGGTTTTGGCGGGGTGGCTG GAAAAGGGAGGAGAAGAAGCGGATAAGGAGACGAGCCGACTAGCGAGTCG GTTGTTGGACACGTTGAAGAGGTTGAATCCTCTGGAGAAGGCGAGTCCGG GAAACGTGTTGGTGCCATTGATGATGGATCGGGGTGTAGGGGGGGCTGCA GGGGGTGCACCAGTACAAGAGGCGTTGCGACAACGATGTGTGGCCGTATT GCAGGCGGCGGGGGGAGGAGGGGGGGGAGGAAGGCACATGAAGTTCCCGG GCACGATGCCTGTGAATTTGTGTCGGAAAGACGTTGCGACCGTCCAATCG GGCGGATACTGGCTCGCGGAGAAAACAGATGGTGTCCGCTACCTTCTCTT TGTGCTCGGAGGCATTAACAACAATCAAGCGTCCTCCTATCTCATGGATC GTTCAATGGCTATATTTACATTTCCAGGCGCAGATGGACTTGGGCAGGCG CTCCCAGCAGGAACTGTGCTAGATGGCGAACTGGTATACAACTGCCTAAC GTCCAGTTATGTGTTTTTGGTGTTTGACTGTCTGTTTTGGGGAGCTGAGC CGATGGTAGGCTTGCCTTTCTCGCAGAGATTGAAGGCTATTCACGCGAAA GTTTTGCCAGTCTACGAACAGGGGAAGGCGGGGGGGAGGTTGGTGCCCGG GAAGCATTTACCGGTGGTGGGCAAGAAGTTTTACAGACGGATGGACATTG GCAAATTGTTTGAGAGGGTGAAGGAGGAGGAGGGACATAGAGTGTATCGA GATGAAGGATGTATTACCTCTTATCTGGCTTACTTGGGATTGGGGCCTAA GAAGGAAGCAGCGGGGAAGGAGGAGGTGGAGGAGGAGGACGGCGAGGCAG AGAGGGTCTGGCCGGTTAGGGATTGCTTGAGTAGATACTACCACAAGACC GACGGCATTGTATTCCAGCCTGACAAACCTTATCAGTGCAGCACAGACAC GTCATTCTTCAAGTGGAAGTGGATGGATACGGTCACGATTGATTTTGCGA TTACCCCCACGCCTTACCGGGTTGTGTGCGGGGCAGGCGCCGCGGGTTCG CTCGATCTAACGCGACAGATTCGGTTGGAACCGCTCGATCTGATGCGCTT ACGCGCTGATATGTCCGCTGCCCATTGTCGGATCGCCGAGCTTGGGTTCA GTGTCGAGACAGGCTTTTGGACTTATAAGATGCTGAGGCCTGATAAGACT GATCCGAATTACTTTACGACTGTGTGTACGACGATGTTGGAATTGGCGGA AGGGATGGAGGAGGAGGAGATCCAGTATCGGATGATGGTTGGGGAGGCGG CGGACGATGACTGGGGGGGGCAAGTGGGGAGGATGAGGAGGGCGGCGGTG GGATGGAGGCTGAGGGAGGTGGAGGGAAGGAAGAAGAGGAAGAAGGAAGA AGAAGAGGGAGTGTGA back to topprotein sequence of NO10G00410.1 >NO10G00410.1-protein ID=NO10G00410.1-protein|Name=NO10G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=762bp MSGFSLAQTMASMQSHTAALEKESTPLPQQQQQQQHMQASAARGATGEEP FTFLARTLDKVRTMILAELPATVWPKVEIEARLGIFCHQGAAEDERVFPA FPGVGVIELGPEGQGGPPTRFFSGVTRGAFEQMKACVAGLGGGEGKTVEA SHLHEIVYTYADKRRLRCPAQNPGSGMLESKRKILDINVALPAASYDLRL TVAVENEEEGVQGIMKGWESRRAKIRTSFKDLLGNSTLGPWSLDFTCVTT LEGDGGGGGGGGGGGRGRGLDEESTEVEMELEAEVLAGWLEKGGEEADKE TSRLASRLLDTLKRLNPLEKASPGNVLVPLMMDRGVGGAAGGAPVQEALR QRCVAVLQAAGGGGGGGRHMKFPGTMPVNLCRKDVATVQSGGYWLAEKTD GVRYLLFVLGGINNNQASSYLMDRSMAIFTFPGADGLGQALPAGTVLDGE LVYNCLTSSYVFLVFDCLFWGAEPMVGLPFSQRLKAIHAKVLPVYEQGKA GGRLVPGKHLPVVGKKFYRRMDIGKLFERVKEEEGHRVYRDEGCITSYLA YLGLGPKKEAAGKEEVEEEDGEAERVWPVRDCLSRYYHKTDGIVFQPDKP YQCSTDTSFFKWKWMDTVTIDFAITPTPYRVVCGAGAAGSLDLTRQIRLE PLDLMRLRADMSAAHCRIAELGFSVETGFWTYKMLRPDKTDPNYFTTVCT TMLELAEGMEEEEIQYRMMVGEAADDDWGGQVGRMRRAAVGWRLREVEGR KKRKKEEEEGV* back to topmRNA from alignment at chr10:141729..144044+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00410.1 ID=NO10G00410.1|Name=NO10G00410.1|organism=Nannochloropsis oceanica|type=mRNA|length=2316bp|location=Sequence derived from alignment at chr10:141729..144044+ (Nannochloropsis oceanica) ACAGCGACTCTTGGTTATACCACAGTCAGAATGAGTGGCTTTTCCTTGGC
CCAAACGATGGCGTCTATGCAATCACACACGGCCGCCCTAGAGAAGGAAT
CCACCCCGCTTCCCCAGCAACAGCAACAGCAGCAGCACATGCAGGCCTCT
GCCGCCCGAGGCGCAACAGGGGAAGAGCCCTTCACCTTCCTGGCCCGTAC
GCTCGACAAGGTCCGCACCATGATCTTGGCGGAGCTTCCAGCAACTGTGT
GGCCCAAGGTGGAAATCGAGGCACGCCTGGGCATTTTTTGCCATCAGGGC
GCAGCAGAGGATGAGAGGGTCTTTCCAGCCTTTCCGGGGGTGGGGGTGAT
TGAGCTAGGGCCTGAAGGCCAAGGAGGGCCACCGACCCGGTTCTTCTCTG
GGGTCACACGCGGGGCGTTTGAGCAAATGAAGGCGTGTGTGGCGGGCTTG
GGAGGAGGGGAAGGGAAAACGGTGGAAGCGAGTCATCTCCATGAAATCGT
GTATACGTACGCCGACAAGCGGCGGCTTCGGTGCCCAGCGCAAAATCCAG
GATCAGGGATGCTAGAGAGTAAGCGAAAAATATTAGATATCAATGTTGCC
TTGCCCGCGGCTTCATATGACTTGAGATTGACCGTGGCAGTGGAGAACGA
GGAGGAAGGGGTGCAAGGGATCATGAAAGGGTGGGAATCGCGCCGGGCCA
AGATTCGAACGAGCTTTAAAGATTTGTTGGGAAACAGCACACTGGGACCT
TGGTCTCTAGACTTTACGTGCGTCACAACCTTGGAGGGGGATGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAAGGGGGCGAGGACTGGATGAGGAAT
CGACGGAGGTGGAGATGGAGTTGGAGGCGGAGGTTTTGGCGGGGTGGCTG
GAAAAGGGAGGAGAAGAAGCGGATAAGGAGACGAGCCGACTAGCGAGTCG
GTTGTTGGACACGTTGAAGAGGTTGAATCCTCTGGAGAAGGCGAGTCCGG
GAAACGTGTTGGTGCCATTGATGATGGATCGGGGTGTAGGGGGGGCTGCA
GGGGGTGCACCAGTACAAGAGGCGTTGCGACAACGATGTGTGGCCGTATT
GCAGGCGGCGGGGGGAGGAGGGGGGGGAGGAAGGCACATGAAGTTCCCGG
GCACGATGCCTGTGAATTTGTGTCGGAAAGACGTTGCGACCGTCCAATCG
GGCGGATACTGGCTCGCGGAGAAAACAGATGGTGTCCGCTACCTTCTCTT
TGTGCTCGGAGGCATTAACAACAATCAAGCGTCCTCCTATCTCATGGATC
GTTCAATGGCTATATTTACATTTCCAGGCGCAGATGGACTTGGGCAGGCG
CTCCCAGCAGGAACTGTGCTAGATGGCGAACTGGTATACAACTGCCTAAC
GTCCAGTTATGTGTTTTTGGTGTTTGACTGTCTGTTTTGGGGAGCTGAGC
CGATGGTAGGCTTGCCTTTCTCGCAGAGATTGAAGGCTATTCACGCGAAA
GTTTTGCCAGTCTACGAACAGGGGAAGGCGGGGGGGAGGTTGGTGCCCGG
GAAGCATTTACCGGTGGTGGGCAAGAAGTTTTACAGACGGATGGACATTG
GCAAATTGTTTGAGAGGGTGAAGGAGGAGGAGGGACATAGAGTGTATCGA
GATGAAGGATGTATTACCTCTTATCTGGCTTACTTGGGATTGGGGCCTAA
GAAGGAAGCAGCGGGGAAGGAGGAGGTGGAGGAGGAGGACGGCGAGGCAG
AGAGGGTCTGGCCGGTTAGGGATTGCTTGAGTAGATACTACCACAAGACC
GACGGCATTGTATTCCAGCCTGACAAACCTTATCAGTGCAGCACAGACAC
GTCATTCTTCAAGTGGAAGTGGATGGATACGGTCACGATTGATTTTGCGA
TTACCCCCACGCCTTACCGGGTTGTGTGCGGGGCAGGCGCCGCGGGTTCG
CTCGATCTAACGCGACAGATTCGGTTGGAACCGCTCGATCTGATGCGCTT
ACGCGCTGATATGTCCGCTGCCCATTGTCGGATCGCCGAGCTTGGGTTCA
GTGTCGAGACAGGCTTTTGGACTTATAAGATGCTGAGGCCTGATAAGACT
GATCCGAATTACTTTACGACTGTGTGTACGACGATGTTGGAATTGGCGGA
AGGGATGGAGGAGGAGGAGATCCAGTATCGGATGATGGTTGGGGAGGCGG
CGGACGATGACTGGGGGGGGCAAGTGGGGAGGATGAGGAGGGCGGCGGTG
GGATGGAGGCTGAGGGAGGTGGAGGGAAGGAAGAAGAGGAAGAAGGAAGA
AGAAGAGGGAGTGTGA back to topCoding sequence (CDS) from alignment at chr10:141729..144044+ >NO10G00410.1 ID=NO10G00410.1|Name=NO10G00410.1|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at chr10:141729..144044+ (Nannochloropsis oceanica) ATGAGTGGCTTTTCCTTGGCCCAAACGATGGCGTCTATGCAATCACACAC GGCCGCCCTAGAGAAGGAATCCACCCCGCTTCCCCAGCAACAGCAACAGC AGCAGCACATGCAGGCCTCTGCCGCCCGAGGCGCAACAGGGGAAGAGCCC TTCACCTTCCTGGCCCGTACGCTCGACAAGGTCCGCACCATGATCTTGGC GGAGCTTCCAGCAACTGTGTGGCCCAAGGTGGAAATCGAGGCACGCCTGG GCATTTTTTGCCATCAGGGCGCAGCAGAGGATGAGAGGGTCTTTCCAGCC TTTCCGGGGGTGGGGGTGATTGAGCTAGGGCCTGAAGGCCAAGGAGGGCC ACCGACCCGGTTCTTCTCTGGGGTCACACGCGGGGCGTTTGAGCAAATGA AGGCGTGTGTGGCGGGCTTGGGAGGAGGGGAAGGGAAAACGGTGGAAGCG AGTCATCTCCATGAAATCGTGTATACGTACGCCGACAAGCGGCGGCTTCG GTGCCCAGCGCAAAATCCAGGATCAGGGATGCTAGAGAGTAAGCGAAAAA TATTAGATATCAATGTTGCCTTGCCCGCGGCTTCATATGACTTGAGATTG ACCGTGGCAGTGGAGAACGAGGAGGAAGGGGTGCAAGGGATCATGAAAGG GTGGGAATCGCGCCGGGCCAAGATTCGAACGAGCTTTAAAGATTTGTTGG GAAACAGCACACTGGGACCTTGGTCTCTAGACTTTACGTGCGTCACAACC TTGGAGGGGGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGG GCGAGGACTGGATGAGGAATCGACGGAGGTGGAGATGGAGTTGGAGGCGG AGGTTTTGGCGGGGTGGCTGGAAAAGGGAGGAGAAGAAGCGGATAAGGAG ACGAGCCGACTAGCGAGTCGGTTGTTGGACACGTTGAAGAGGTTGAATCC TCTGGAGAAGGCGAGTCCGGGAAACGTGTTGGTGCCATTGATGATGGATC GGGGTGTAGGGGGGGCTGCAGGGGGTGCACCAGTACAAGAGGCGTTGCGA CAACGATGTGTGGCCGTATTGCAGGCGGCGGGGGGAGGAGGGGGGGGAGG AAGGCACATGAAGTTCCCGGGCACGATGCCTGTGAATTTGTGTCGGAAAG ACGTTGCGACCGTCCAATCGGGCGGATACTGGCTCGCGGAGAAAACAGAT GGTGTCCGCTACCTTCTCTTTGTGCTCGGAGGCATTAACAACAATCAAGC GTCCTCCTATCTCATGGATCGTTCAATGGCTATATTTACATTTCCAGGCG CAGATGGACTTGGGCAGGCGCTCCCAGCAGGAACTGTGCTAGATGGCGAA CTGGTATACAACTGCCTAACGTCCAGTTATGTGTTTTTGGTGTTTGACTG TCTGTTTTGGGGAGCTGAGCCGATGGTAGGCTTGCCTTTCTCGCAGAGAT TGAAGGCTATTCACGCGAAAGTTTTGCCAGTCTACGAACAGGGGAAGGCG GGGGGGAGGTTGGTGCCCGGGAAGCATTTACCGGTGGTGGGCAAGAAGTT TTACAGACGGATGGACATTGGCAAATTGTTTGAGAGGGTGAAGGAGGAGG AGGGACATAGAGTGTATCGAGATGAAGGATGTATTACCTCTTATCTGGCT TACTTGGGATTGGGGCCTAAGAAGGAAGCAGCGGGGAAGGAGGAGGTGGA GGAGGAGGACGGCGAGGCAGAGAGGGTCTGGCCGGTTAGGGATTGCTTGA GTAGATACTACCACAAGACCGACGGCATTGTATTCCAGCCTGACAAACCT TATCAGTGCAGCACAGACACGTCATTCTTCAAGTGGAAGTGGATGGATAC GGTCACGATTGATTTTGCGATTACCCCCACGCCTTACCGGGTTGTGTGCG GGGCAGGCGCCGCGGGTTCGCTCGATCTAACGCGACAGATTCGGTTGGAA CCGCTCGATCTGATGCGCTTACGCGCTGATATGTCCGCTGCCCATTGTCG GATCGCCGAGCTTGGGTTCAGTGTCGAGACAGGCTTTTGGACTTATAAGA TGCTGAGGCCTGATAAGACTGATCCGAATTACTTTACGACTGTGTGTACG ACGATGTTGGAATTGGCGGAAGGGATGGAGGAGGAGGAGATCCAGTATCG GATGATGGTTGGGGAGGCGGCGGACGATGACTGGGGGGGGCAAGTGGGGA GGATGAGGAGGGCGGCGGTGGGATGGAGGCTGAGGGAGGTGGAGGGAAGG AAGAAGAGGAAGAAGGAAGAAGAAGAGGGAGTGTGA back to top
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