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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:117040..119826 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00340.1 vs.
Match: CBJ26156.1 (putative; katanin like protein [Ectocarpus siliculosus]) HSP 1 Score: 520.0 bits (1338), Expect = 6.800e-144 Identity = 273/453 (60.26%), Postives = 322/453 (71.08%), Query Frame = 0
Query: 3 NNTFISQAIDIVKQAIEADTKGEYENALGLYKKSLDYFMAGLKYEKNPQTKATISARVEGRR--------------------------GGGTATRNPGEDEEKE--DEEKNKLKGALSSSIVTEKPNVKWDDVAGLDLAKEALKEAVILPVKFPQLFVGKRKPWRGILLYGPPGTGKSYLAKAVATEADCKFFSVSSSDLVSKWQGESERLVRSLFEMAREEGRAIIFIDEVDSLCGQRSEGEADSVRRIKTEFLVQMDGVGKADPTKQVLILGATNIPWELDPAIRRRFEKRVYIPLPEASARAIMFKINLGDTPNSLTDEEFAQLADMTEGCSGADISICVREALMEPLRKCKQAKYFTPNADGMLTPYHSGTGEDPNAGTLT---------CGSCNAVRGGLYEIEAEKLLVPDIEFADFEKAAKRAKSSVAPEELDHFTEWTNEFGQEG 419
++ FI +AID+VK AI AD +YE ALGLYKKSL+YFM GLKYE NP KATI RVEG GGG AT + + ++ DEE+ KL+GAL+ +IV+EKPNVKW DVAGL+ AK LKEAVILP KFPQLF GKR+PW+GILLYGPPGTGKSYLAKAVATE+D FF+VSSSDLVSKWQGESE+LVR+LFE+ARE R+IIFIDEVDS+CG RSEGE DS RRIKTEFLVQM GVG +L+LGATN+PWELDPA+RRRFEKR+YIPLPE AR+IMFK++LGDT N+LTD+ F L D +GCSG+DIS+ REALMEPLRKC+ AK F P D ML P LT C +C A+R LYE+ EKLLVPD+ + DF KA ++ SSV+ EEL F +WT +FGQEG
Sbjct: 2 DSQFIPKAIDMVKDAIAADNNQDYETALGLYKKSLEYFMTGLKYEPNPMAKATIMKRVEGYMKRAEILKEIVDEQAAAKNGMGKGGGGGGGAATASAADKKQDGGGDEEQKKLRGALAGAIVSEKPNVKWSDVAGLEQAKSTLKEAVILPAKFPQLFTGKRRPWKGILLYGPPGTGKSYLAKAVATESDAVFFAVSSSDLVSKWQGESEKLVRNLFELAREHERSIIFIDEVDSMCGSRSEGENDSARRIKTEFLVQMQGVGNTH--DGILVLGATNVPWELDPAMRRRFEKRIYIPLPEPEARSIMFKLHLGDTANTLTDQNFDALGDEAKGCSGSDISVITREALMEPLRKCQMAKQFVPTKDNMLIPAEKYPNCPYCPQDLTTRPAKLGEVCPTCKAIRTSLYEVATEKLLVPDVCYDDFLKALTKSGSSVSEEELTRFVQWTEDFGQEG 452
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00340.1 ID=NO10G00340.1|Name=NO10G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp
ATGGCCAACAACACCTTCATCTCCCAGGCGATCGACATCGTGAAGCAAGC
CATCGAAGCCGACACGAAAGGGGAGTATGAGAATGCCTTGGGCCTGTACA
AGAAGAGCCTCGACTACTTCATGGCCGGGCTGAAGTACGAGAAGAACCCT
CAGACGAAAGCCACCATCTCCGCGCGCGTGGAGGGGAGGAGGGGGGGAGG
GACGGCAACCCGAAACCCGGGCGAGGACGAGGAGAAGGAGGACGAGGAGA
AGAACAAGCTGAAGGGGGCCTTGAGCTCGTCGATTGTGACGGAGAAGCCG
AATGTGAAGTGGGACGATGTGGCGGGCTTGGACCTGGCAAAGGAGGCCTT
AAAAGAAGCGGTCATCCTCCCCGTGAAGTTCCCTCAGCTCTTCGTAGGCA
AGCGTAAACCGTGGCGCGGCATCCTCCTCTACGGACCCCCCGGTACGGGC
AAGTCCTACTTGGCCAAAGCAGTCGCCACCGAAGCAGACTGCAAATTCTT
CTCCGTCTCCTCCTCAGACCTAGTGAGTAAATGGCAAGGCGAGAGCGAAC
GCCTGGTCCGCTCCCTCTTCGAAATGGCGCGAGAAGAGGGCCGGGCAATC
ATTTTCATCGACGAGGTGGACTCCCTGTGTGGGCAACGATCGGAGGGGGA
GGCGGACAGCGTGCGGAGGATCAAGACGGAATTTTTAGTGCAGATGGACG
GGGTGGGAAAGGCGGATCCCACCAAGCAAGTCCTCATCTTGGGGGCCACC
AACATCCCCTGGGAGCTCGACCCCGCCATCCGCCGTCGCTTCGAAAAGCG
AGTCTATATCCCGTTACCTGAAGCCTCTGCCCGTGCCATCATGTTTAAGA
TAAATCTGGGGGATACGCCCAACTCACTCACTGACGAGGAATTTGCCCAG
CTTGCTGACATGACGGAAGGCTGTTCGGGTGCGGATATCTCAATATGTGT
CCGCGAGGCCCTGATGGAGCCCTTGAGGAAATGCAAACAGGCCAAGTACT
TCACACCCAATGCCGACGGCATGCTCACCCCTTACCATAGCGGCACGGGC
GAAGACCCGAACGCCGGGACTTTAACCTGTGGGAGTTGTAATGCGGTGCG
GGGAGGCTTGTACGAGATAGAGGCTGAGAAGCTGTTGGTGCCTGACATTG
AATTCGCGGACTTCGAGAAGGCCGCTAAGCGTGCCAAATCCTCAGTTGCG
CCTGAGGAGCTGGATCACTTCACGGAGTGGACGAACGAATTTGGACAGGA
GGGTTGA back to topprotein sequence of NO10G00340.1 >NO10G00340.1-protein ID=NO10G00340.1-protein|Name=NO10G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MANNTFISQAIDIVKQAIEADTKGEYENALGLYKKSLDYFMAGLKYEKNP
QTKATISARVEGRRGGGTATRNPGEDEEKEDEEKNKLKGALSSSIVTEKP
NVKWDDVAGLDLAKEALKEAVILPVKFPQLFVGKRKPWRGILLYGPPGTG
KSYLAKAVATEADCKFFSVSSSDLVSKWQGESERLVRSLFEMAREEGRAI
IFIDEVDSLCGQRSEGEADSVRRIKTEFLVQMDGVGKADPTKQVLILGAT
NIPWELDPAIRRRFEKRVYIPLPEASARAIMFKINLGDTPNSLTDEEFAQ
LADMTEGCSGADISICVREALMEPLRKCKQAKYFTPNADGMLTPYHSGTG
EDPNAGTLTCGSCNAVRGGLYEIEAEKLLVPDIEFADFEKAAKRAKSSVA
PEELDHFTEWTNEFGQEG* back to topmRNA from alignment at chr10:117040..119826- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00340.1 ID=NO10G00340.1|Name=NO10G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2787bp|location=Sequence derived from alignment at chr10:117040..119826- (Nannochloropsis oceanica)
ATGGCCAACAACACCTTCATCTCCCAGGCGATCGACATCGTGAAGCAAGC
CATCGAAGCCGACACGAAAGGGGAGTATGAGAATGCCTTGGGCCTGTACA
AGAAGAGCCTCGGTAAGGAAGGGAGGGGAAGACAGGGAGCGAGGAAAGGA
GGGGGAGGGCAATATTGGCCAAGTTTTCGGGCCCAGCGGTGAGATGTCAT
GGTTGATTGAGTCCCTGTCCCCTCCTAATGATAAATTTCAGGAAGCTACC
TCATCCTTGCCATCTGGAACACGCCATCCTTCTCCTGCTCATGCCTTCTT
TCCTCCCTTACTTCCTTCACCTCCCTCCCCTCCCCTCTTCCTAGACTACT
TCATGGCCGGGCTGAAGTACGAGAAGAACCCTCAGACGAAAGCCACCATC
TCCGCGCGCGTGGAGGGGTACATGAAGCGCGCTGAGGACCTAAAAGCAGT
CGTGGATAAAGACAGAGCAGCCGCTGCGAACAGAGGCAAAAAAGGAGGAG
GGGGGGAGGGACGGCAACCCGAAACCCGGGCGAGGACGAGGAGAAGGAGG
ACGAGGAGAAGAACAAGCTGAAGGGGGCCTTGAGCTCGTCGATTGTGACG
GAGAAGCCGAATGTGAAGTGGGACGATGTGGCGGGCTTGGACCTGGCAAA
GGAGGCCTTAAAAGAAGCGGTAGGTGGGTCGGATGCTCTTCCCTCCCTCC
CGCCCACCCACCCCATCTCCCTTCCCTCCGACATCTCTTCCCTTGTATCT
ACCCCTCATCGAGCCCTTTCCTCTCTTTCCACCACCGTGCCTTTGTCACT
GTCCCTCATTGAGCCCTTCCCGCCCCATCACGGCGCCTTCGCCTCACTGA
AGCCCAATGGCTCTTCCTCTCTATGCTTGTCAAGGACCATCAACCATGAT
GCCATCAACTCGTTGAACCTAAAAAGCGAATTCCTTCCCCTCCTCCCTCC
CTCCCTCCCTCCCCCCCTTCCTTCCTTCCTCCCTCCCTCCCTCCCTCTCC
CCCCCTCTCAGGTCATCCTCCCCGTGAAGTTCCCTCAGCTCTTCGTAGGC
AAGCGTAAACCGTGGCGCGGCATCCTCCTCTACGGACCCCCCGGTACGGG
CAAGTCCTACTTGGCCAAAGCAGTCGCCACCGAAGCAGACTGCAAATTCT
TCTCCGTCTCCTCCTCAGACCTAGGTTCGTGCCCTCCCTCCCTTATTCCC
TCCCTCCCTTAGTTTCGACCTCCATTCTCCTCGTTTTCACCCTCCTTTTC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCCAGTGAGTAAATG
GCAAGGCGAGAGCGAACGCCTGGTCCGCTCCCTCTTCGAAATGGCGCGAG
AAGAGGGCCGGGCAATCATTTTCATCGACGAGGTGGACTCCCTGTGTGGG
CAACGATCGGAGGGGGAGGCGGACAGCGTGCGGAGGATCAAGACGGAATT
TTTAGTGCAGATGGACGGGGTGGGAAAGGTAGGCTTTCAGGGAGGGAGGA
ATGGACGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGAGGGGGAG
GGAGGGAGGGAGGGAGGAGGGGAAGCAATGAGGGACTCCGCCGCCGCTTC
AACACGCTACCAACCCTTTTTTTTAAACGAATCATTTTAAACTAAAATGG
TGAAATTGCATTCCTAATATTTATATTACGTTTACACATACACACAGGCG
GATCCCACCAAGCAAGTCCTCATCTTGGGGGCCACCAACATCCCCTGGGA
GCTCGACCCCGCCATCCGCCGTCGCTTCGAAAAGCGAGTCTATATCCCGT
TACCTGAAGCCTCTGCCCGTGCCATCATGTTTAAGATAAATCTGGGGGAT
ACGCCCAACTCACTCACTGACGAGGAATTTGCCCAGCTTGCTGACATGAC
GGAAGGCTGTTCGGGTAAGATCATGCCTGACCTCCCTCGCTCGCTCCTCT
CCTCTCTCCCTCCCTCCTCGTCGCCCTCTTTTTCTGAAGAATGGATGCCC
TTGCCATTTAACCTTTCCATTTACCAACCCGCCGTCCCTCCTTTCCTCCC
TCTCGCCGTCCCTCCCTCCCTCCCTTCCTCCCTCCCCTCACTAGGTGCGG
ATATCTCAATATGTGTCCGCGAGGCCCTGATGGAGCCCTTGAGGAAATGC
AAACAGGCCAAGTACTTCACACCCAATGCCGACGGTAGGTAGGGAGGGAG
GAATGGAGGGAGGGAACGAAGGAAGAATGTATGCACTATCAGAGGTCTAC
AGAATCTCATCCTGTTCCTCCCCCTCCCTCCCTTCCTCCCTCCCTTCCTC
CCCCCTTCCTCCCTTCCTCCGTAGGCATGCTCACCCCTTACCATAGCGGC
ACGGGCGAAGACCCGAACGTCCCTCCCTGCCCTCGATGCCCCATGGTTCT
TTTAACGGAGGGATTAAATAAAGGGGGAGGGAGGGGGGAGGGATGGCAGG
GAACAAGGCCGGGACTTTAACCTGTGGGAGTTGTAATGCGGTGCGGGGAG
GCTTGTACGAGATAGAGGCTGAGAAGCTGTTGGTAAGGAGGGGATATCGG
GTGTGGAGGGAACGAGGGGCAGAAAGAATATCTGCTCTTCGGTCATTCAA
TGAACACTTTATTCACTCCTCCCTTCCTCCTTCCCTCTCTCCTTCCCTCC
CTCCCCATCACTTCCAGGTGCCTGACATTGAATTCGCGGACTTCGAGAAG
GCCGCTAAGCGTGCCAAATCCTCAGTTGCGCCTGAGGAGCTGGATCACTT
CACGGAGTGGACGAACGAATTTGGACAGGAGGGTTGA back to topCoding sequence (CDS) from alignment at chr10:117040..119826- >NO10G00340.1 ID=NO10G00340.1|Name=NO10G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr10:117040..119826- (Nannochloropsis oceanica)
ATGGCCAACAACACCTTCATCTCCCAGGCGATCGACATCGTGAAGCAAGC
CATCGAAGCCGACACGAAAGGGGAGTATGAGAATGCCTTGGGCCTGTACA
AGAAGAGCCTCGACTACTTCATGGCCGGGCTGAAGTACGAGAAGAACCCT
CAGACGAAAGCCACCATCTCCGCGCGCGTGGAGGGGAGGAGGGGGGGAGG
GACGGCAACCCGAAACCCGGGCGAGGACGAGGAGAAGGAGGACGAGGAGA
AGAACAAGCTGAAGGGGGCCTTGAGCTCGTCGATTGTGACGGAGAAGCCG
AATGTGAAGTGGGACGATGTGGCGGGCTTGGACCTGGCAAAGGAGGCCTT
AAAAGAAGCGGTCATCCTCCCCGTGAAGTTCCCTCAGCTCTTCGTAGGCA
AGCGTAAACCGTGGCGCGGCATCCTCCTCTACGGACCCCCCGGTACGGGC
AAGTCCTACTTGGCCAAAGCAGTCGCCACCGAAGCAGACTGCAAATTCTT
CTCCGTCTCCTCCTCAGACCTAGTGAGTAAATGGCAAGGCGAGAGCGAAC
GCCTGGTCCGCTCCCTCTTCGAAATGGCGCGAGAAGAGGGCCGGGCAATC
ATTTTCATCGACGAGGTGGACTCCCTGTGTGGGCAACGATCGGAGGGGGA
GGCGGACAGCGTGCGGAGGATCAAGACGGAATTTTTAGTGCAGATGGACG
GGGTGGGAAAGGCGGATCCCACCAAGCAAGTCCTCATCTTGGGGGCCACC
AACATCCCCTGGGAGCTCGACCCCGCCATCCGCCGTCGCTTCGAAAAGCG
AGTCTATATCCCGTTACCTGAAGCCTCTGCCCGTGCCATCATGTTTAAGA
TAAATCTGGGGGATACGCCCAACTCACTCACTGACGAGGAATTTGCCCAG
CTTGCTGACATGACGGAAGGCTGTTCGGGTGCGGATATCTCAATATGTGT
CCGCGAGGCCCTGATGGAGCCCTTGAGGAAATGCAAACAGGCCAAGTACT
TCACACCCAATGCCGACGGCATGCTCACCCCTTACCATAGCGGCACGGGC
GAAGACCCGAACGCCGGGACTTTAACCTGTGGGAGTTGTAATGCGGTGCG
GGGAGGCTTGTACGAGATAGAGGCTGAGAAGCTGTTGGTGCCTGACATTG
AATTCGCGGACTTCGAGAAGGCCGCTAAGCGTGCCAAATCCTCAGTTGCG
CCTGAGGAGCTGGATCACTTCACGGAGTGGACGAACGAATTTGGACAGGA
GGGTTGA back to top
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