NO10G00300.1, NO10G00300.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00300.1
Unique Name	NO10G00300.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	954
Alignment location	chr10:103145..104098 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:103145..104098 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO10G00300.1 vs.

BLAST of NO10G00300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00300	NO10G00300	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00300.1	NO10G00300.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00300.1.cds1	NO10G00300.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:103145..104098-
coding sequence from alignment at chr10:103145..104098-

mRNA sequence

>NO10G00300.1 ID=NO10G00300.1|Name=NO10G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGGTCACCGTCAGCAGCAGCAGCAGCGCCGGCATTACCAGCCGAAAGAA
GCAGCAGGCCAGTTCAAGCTCCACACAAAGCACTTCTTCCTCTGCGGCAG
CGGCAGCGGGAGCCCCACCAGCCGCCCCGCTCTCGTACCTTGACATGCCC
GTCCGCCAATGGACACAGTGCGAGGTGCAAGTCGGACACTTTTCCCTACC
CAACAAGTGGATGCCAAAGTCGCAGGCAGCGCCCACACCCGAGCTTCGAA
ATGGTCCTCGCATCACGCATGGCATGCGGAAACGGGCCATGATGGGCTTT
GGGTTCGGTCATCGAGGTGGACGGGGGGAAGGAGGCGGTAATGATATGAT
GGGAGGGAGAATCGGAGGGTATTCGGAAGGAATGGAGGGAGGAATGGAGG
ACGGGGAGGGGTATGTGCTCGGGCCGTTGACCAGACGGACGCGGAAGGAG
CTGAATCTACCAGAGGTACCGGAAGTGGTGGGGATAGACGAGGCGCTCGA
GAGGAAACTGAAAAGTACTGCAGCTGCTGCAGCCGCTGCGTCTGGAAACA
AGGCGTCTGGGGCGACGGGGAAGAGAAAGGGGAAAAAAGTCGTGGAAGGA
GAGGGTGGGAAAGCGGCCAAAAAAGGCGCGAAGAAGGCAGCGGCAGCAGC
AGCAACAACAGCACCAGCACCAGCACCAATAATAGAAACTGCTGCAGCAC
CAGCAACAGCACCAGCAACAGCAGCACCAGCAACAGCAACAGTAGCATCC
GAGGCTGCACCAGTTGGAGCAGGAATAGGAGGAAGAGGAGCAGCGAATGG
GCTGGTGGGTTTGTCGTCGTCCCGGCCTTCCTTCTCCTCCTTCATCCCCT
CTTCCCTCTCCACCACCGGGGCCGGGCAGCACGTACATACCCCCGCCACA
CACGACGCCCATCACCACAATCATCCATCCCTCCATCCCTCCCTTTCCTC
CTGA

protein sequence of NO10G00300.1

>NO10G00300.1-protein ID=NO10G00300.1-protein|Name=NO10G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MVTVSSSSSAGITSRKKQQASSSSTQSTSSSAAAAAGAPPAAPLSYLDMP
VRQWTQCEVQVGHFSLPNKWMPKSQAAPTPELRNGPRITHGMRKRAMMGF
GFGHRGGRGEGGGNDMMGGRIGGYSEGMEGGMEDGEGYVLGPLTRRTRKE
LNLPEVPEVVGIDEALERKLKSTAAAAAAASGNKASGATGKRKGKKVVEG
EGGKAAKKGAKKAAAAAATTAPAPAPIIETAAAPATAPATAAPATATVAS
EAAPVGAGIGGRGAANGLVGLSSSRPSFSSFIPSSLSTTGAGQHVHTPAT
HDAHHHNHPSLHPSLSS*

mRNA from alignment at chr10:103145..104098-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00300.1 ID=NO10G00300.1|Name=NO10G00300.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp|location=Sequence derived from alignment at chr10:103145..104098- (Nannochloropsis oceanica)
ATGGTCACCGTCAGCAGCAGCAGCAGCGCCGGCATTACCAGCCGAAAGAA
GCAGCAGGCCAGTTCAAGCTCCACACAAAGCACTTCTTCCTCTGCGGCAG
CGGCAGCGGGAGCCCCACCAGCCGCCCCGCTCTCGTACCTTGACATGCCC
GTCCGCCAATGGACACAGTGCGAGGTGCAAGTCGGACACTTTTCCCTACC
CAACAAGTGGATGCCAAAGTCGCAGGCAGCGCCCACACCCGAGCTTCGAA
ATGGTCCTCGCATCACGCATGGCATGCGGAAACGGGCCATGATGGGCTTT
GGGTTCGGTCATCGAGGTGGACGGGGGGAAGGAGGCGGTAATGATATGAT
GGGAGGGAGAATCGGAGGGTATTCGGAAGGAATGGAGGGAGGAATGGAGG
ACGGGGAGGGGTATGTGCTCGGGCCGTTGACCAGACGGACGCGGAAGGAG
CTGAATCTACCAGAGGTACCGGAAGTGGTGGGGATAGACGAGGCGCTCGA
GAGGAAACTGAAAAGTACTGCAGCTGCTGCAGCCGCTGCGTCTGGAAACA
AGGCGTCTGGGGCGACGGGGAAGAGAAAGGGGAAAAAAGTCGTGGAAGGA
GAGGGTGGGAAAGCGGCCAAAAAAGGCGCGAAGAAGGCAGCGGCAGCAGC
AGCAACAACAGCACCAGCACCAGCACCAATAATAGAAACTGCTGCAGCAC
CAGCAACAGCACCAGCAACAGCAGCACCAGCAACAGCAACAGTAGCATCC
GAGGCTGCACCAGTTGGAGCAGGAATAGGAGGAAGAGGAGCAGCGAATGG
GCTGGTGGGTTTGTCGTCGTCCCGGCCTTCCTTCTCCTCCTTCATCCCCT
CTTCCCTCTCCACCACCGGGGCCGGGCAGCACGTACATACCCCCGCCACA
CACGACGCCCATCACCACAATCATCCATCCCTCCATCCCTCCCTTTCCTC
CTGA

Coding sequence (CDS) from alignment at chr10:103145..104098-

>NO10G00300.1 ID=NO10G00300.1|Name=NO10G00300.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr10:103145..104098- (Nannochloropsis oceanica)
ATGGTCACCGTCAGCAGCAGCAGCAGCGCCGGCATTACCAGCCGAAAGAA
GCAGCAGGCCAGTTCAAGCTCCACACAAAGCACTTCTTCCTCTGCGGCAG
CGGCAGCGGGAGCCCCACCAGCCGCCCCGCTCTCGTACCTTGACATGCCC
GTCCGCCAATGGACACAGTGCGAGGTGCAAGTCGGACACTTTTCCCTACC
CAACAAGTGGATGCCAAAGTCGCAGGCAGCGCCCACACCCGAGCTTCGAA
ATGGTCCTCGCATCACGCATGGCATGCGGAAACGGGCCATGATGGGCTTT
GGGTTCGGTCATCGAGGTGGACGGGGGGAAGGAGGCGGTAATGATATGAT
GGGAGGGAGAATCGGAGGGTATTCGGAAGGAATGGAGGGAGGAATGGAGG
ACGGGGAGGGGTATGTGCTCGGGCCGTTGACCAGACGGACGCGGAAGGAG
CTGAATCTACCAGAGGTACCGGAAGTGGTGGGGATAGACGAGGCGCTCGA
GAGGAAACTGAAAAGTACTGCAGCTGCTGCAGCCGCTGCGTCTGGAAACA
AGGCGTCTGGGGCGACGGGGAAGAGAAAGGGGAAAAAAGTCGTGGAAGGA
GAGGGTGGGAAAGCGGCCAAAAAAGGCGCGAAGAAGGCAGCGGCAGCAGC
AGCAACAACAGCACCAGCACCAGCACCAATAATAGAAACTGCTGCAGCAC
CAGCAACAGCACCAGCAACAGCAGCACCAGCAACAGCAACAGTAGCATCC
GAGGCTGCACCAGTTGGAGCAGGAATAGGAGGAAGAGGAGCAGCGAATGG
GCTGGTGGGTTTGTCGTCGTCCCGGCCTTCCTTCTCCTCCTTCATCCCCT
CTTCCCTCTCCACCACCGGGGCCGGGCAGCACGTACATACCCCCGCCACA
CACGACGCCCATCACCACAATCATCCATCCCTCCATCCCTCCCTTTCCTC
CTGA

Synonyms

Publications