NO10G00130.1, NO10G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO10G00130.1
Unique NameNO10G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1539
Alignment locationchr10:40340..43308 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr10genomechr10:40340..43308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO10G00130.1 vs.
Match: XP_008876810.1 (hypothetical protein H310_11811 [Aphanomyces invadans]; ETV94495.1 hypothetical protein H310_11811 [Aphanomyces invadans])

HSP 1 Score: 248.4 bits (633), Expect = 4.700e-62
Identity = 160/357 (44.82%), Postives = 212/357 (59.38%), Query Frame = 0 
Query:  111 EEDEKFTPSYAAYTPSSRKTHGLSYKTPELRQ--RHALAPPSSVSRPNIDDALRRISLILHQHVDICEGRLARLKALRRRQQQRRRQAQAEEREKRRQHYLHLQP---HQHRHQQLQQQQQHLQRTASPALSSPTSSSS--EGHSQGHSDDVDPEENDEEASFCTTQEEEDEDEDEDEEEEIKMFDRTKMRLFAEEEFVSPQYLYRFVRVPIARPGICYSMKQVKPHYHLPALDEIYHFLRTLFKKAALSSECAIVCLIYVERLMQVAHIPLVAITWRPIVLCGLLLASKVWQDLSSWNVEFSQIFPHFSLQSINRLERLFINQLKWDLYISSSLYAKYYFALRSLYENKDVRRRYN 461
            +E   F P++   TP  R T+GL Y+ P+ R      L PPSSV++PN DD+LRR+S++L+QH+  CE RL                     RE R      + P   H   H            T++PA S+   + S  +G   G +DD DP  ++      T           + +  +     ++ R+F EE FV+PQY Y+FVR+P+  P   Y M +V    H+P++DEI+ F + LF +A LS+EC IVCLIY+ERLM+ A IPL+  +W+PIVLCGLLLASKVWQDLSSWNVE S +FP F L SINRLERLF++ ++WDLYIS S+YAKYYFALRSL E KD RRRYN
Sbjct:   27 DEARHFQPTHTVCTPRLR-TNGLKYRAPDARVDVSETLPPPSSVAKPNYDDSLRRVSVVLYQHIRRCEKRL---------------------RESRGGGAGIVPPGGFHGLFHS-----------TSAPAASTNAVADSIVQG-GDGSADDNDPVHDEPPFDSSTVL---------NGQTVLSNLGVSRDRVFDEEHFVTPQYTYQFVRLPMLHPLTYYKMDKVSCKTHIPSVDEIFRFCKNLFNRAQLSAECTIVCLIYIERLMERASIPLLGSSWKPIVLCGLLLASKVWQDLSSWNVEISNVFPQFPLHSINRLERLFLHYIQWDLYISGSVYAKYYFALRSLTEKKDFRRRYN 340
The following BLAST results are available for this feature:
BLAST of NO10G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008876810.14.700e-6244.82hypothetical protein H310_11811 [Aphanomyces invad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO10G00130NO10G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO10G00130.1NO10G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO10G00130.1.cds1NO10G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds2NO10G00130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds3NO10G00130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds4NO10G00130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds5NO10G00130.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds6NO10G00130.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds7NO10G00130.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds8NO10G00130.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds9NO10G00130.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds10NO10G00130.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO10G00130.1.cds11NO10G00130.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO10G00130.1 ID=NO10G00130.1|Name=NO10G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp
ATGGGTGCCGCGGGCTCGCACCATGTCCACACCCTCTCCTCCTCCTACAC
CCATCAGCAGCAGCAATGGCGCGACGAACGGAAAGGTCGACGGAAAGAGC
GAGGGGGGAAGAAAGGAAGGAGAACGGCAGGGCATGGGAACGGAACGACA
GCGACAGAGATAGAAGGATTGATAAATGAGGTTAAGGTGGAAGGAGGAGA
AGAAATAGAAAGGGTGCTTTCACCACCACTTTCGATCCCTTTCTCGCAAG
GAAGCGGAGGCGGGGATGAAGGAGGAGAGGGGGGAGGAGGAGGAGGAGGA
GGAGGAGGAACAGGGGGGGGGGAGAAGGGCGAGGAGGACGAGAAGTTCAC
GCCTTCCTATGCGGCCTACACTCCGTCCTCGCGCAAGACGCACGGGCTGA
GCTACAAGACCCCCGAGCTGCGGCAGCGGCATGCCCTGGCCCCACCCTCC
AGTGTCTCCCGGCCCAATATTGACGACGCCCTTCGACGCATCTCTCTCAT
TCTACATCAGCACGTTGATATCTGCGAGGGCCGCCTGGCGCGCCTCAAGG
CTCTGAGGCGACGGCAGCAACAACGGCGACGGCAGGCCCAAGCAGAGGAG
CGGGAGAAGCGGCGGCAACACTACCTCCACCTCCAGCCGCACCAGCACCG
CCACCAGCAGCTGCAGCAGCAGCAGCAGCACTTGCAGCGCACCGCCTCCC
CCGCTCTCTCCTCCCCCACCTCCTCCTCCTCTGAAGGCCACAGCCAGGGC
CATAGCGACGACGTGGACCCGGAGGAGAACGACGAAGAAGCCTCCTTCTG
CACCACGCAAGAAGAAGAAGACGAGGACGAGGACGAGGACGAGGAAGAAG
AAATCAAGATGTTCGACCGCACCAAGATGCGCCTCTTCGCGGAAGAAGAG
TTTGTGTCCCCCCAGTACCTCTATCGCTTTGTGCGCGTGCCCATCGCCCG
CCCCGGGATCTGCTACAGCATGAAGCAAGTCAAGCCGCACTACCACCTGC
CCGCCTTGGACGAGATTTATCACTTCCTCCGCACCCTCTTCAAGAAGGCC
GCCCTCTCATCCGAATGTGCCATCGTCTGCCTCATCTACGTAGAAAGACT
GATGCAAGTAGCCCACATACCGCTCGTCGCTATCACATGGCGACCCATCG
TGCTCTGCGGCCTCCTCCTCGCCTCCAAAGTCTGGCAAGACCTGTCTTCG
TGGAACGTGGAGTTCTCCCAGATCTTTCCCCATTTCTCCCTCCAGTCTAT
CAACCGCCTCGAGCGCCTCTTTATCAACCAGCTCAAGTGGGACCTGTACA
TCTCCTCCTCGCTCTACGCGAAGTACTACTTCGCCTTGCGGAGCCTTTAC
GAGAACAAGGACGTCCGTCGTCGCTACAACACCTTCTTTATCAAGCCATC
CCTCCACACGGCCCGAAAGCCCCCCCCTCCTCCGCCACCTCCCTCCCTCC
CGGGGGCCGTGCCCAAGGCAGACGAGATCTCCCTGCGGACAGGGGTAGTG
GCAGACGACCTCCGAGACATGTTTTCCAAAAGTGTATAG
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protein sequence of NO10G00130.1

>NO10G00130.1-protein ID=NO10G00130.1-protein|Name=NO10G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MGAAGSHHVHTLSSSYTHQQQQWRDERKGRRKERGGKKGRRTAGHGNGTT
ATEIEGLINEVKVEGGEEIERVLSPPLSIPFSQGSGGGDEGGEGGGGGGG
GGGTGGGEKGEEDEKFTPSYAAYTPSSRKTHGLSYKTPELRQRHALAPPS
SVSRPNIDDALRRISLILHQHVDICEGRLARLKALRRRQQQRRRQAQAEE
REKRRQHYLHLQPHQHRHQQLQQQQQHLQRTASPALSSPTSSSSEGHSQG
HSDDVDPEENDEEASFCTTQEEEDEDEDEDEEEEIKMFDRTKMRLFAEEE
FVSPQYLYRFVRVPIARPGICYSMKQVKPHYHLPALDEIYHFLRTLFKKA
ALSSECAIVCLIYVERLMQVAHIPLVAITWRPIVLCGLLLASKVWQDLSS
WNVEFSQIFPHFSLQSINRLERLFINQLKWDLYISSSLYAKYYFALRSLY
ENKDVRRRYNTFFIKPSLHTARKPPPPPPPPSLPGAVPKADEISLRTGVV
ADDLRDMFSKSV*
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mRNA from alignment at chr10:40340..43308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO10G00130.1 ID=NO10G00130.1|Name=NO10G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2969bp|location=Sequence derived from alignment at chr10:40340..43308- (Nannochloropsis oceanica)
ATGGGTGCCGCGGGCTCGCACCATGTCCACACCCTCTCCTCCTCCTACAC
CCATCAGCAGCAGCAATGGCGCGACGAACGGAAAGGTCGACGGAAAGAGC
GAGGGGGGAAGAAAGGAAGGAGAACGGCAGGGCATGGGAACGGAACGACA
GCGACAGAGATAGAAGGATTGATAAATGAGGTTAAGGTGGAAGGAGGAGA
AGAAATAGAAAGGGTGCTTTCACCACCACTTTCGATCCCTTTCTCGCAAG
GAAGCGGAGGCGGGGATGAAGGAGGAGAGGGGGGAGGAGGAGGAGGAGGA
GGAGGAGGAACAGGGGGGGGGGAGAAGGTGGAGCAGGGAAGGGGAAGGTC
CGATTTGTTGCCACGGAAAGTTTGAATAATGGTAGCACCCAGGGCGAGGA
GGACGAGAAGTTCACGCCTTCCTATGCGGCCTACACTCCGTCCTCGCGCA
AGACGCACGGGCTGAGGTAAGAAGGGGGAAGGGAGGGAGGGATCGAGGGA
GGGAGGGACGGAGGGAGAGGGGCATGATCGTGTTTGTTTGCCATGTCTGT
TTGGCTCACAAGGACGAAGTGACGAAAGGACTCGCTTATCTGTCTTTCTT
TCTCTCTCTCACGGCACCATTCCCCTTCCACCCATTTCCTGACTACAACC
CCCTATTCCCTTTTCCTTCCCTTTCGATGGTAGCTACAAGACCCCCGAGC
TGCGGCAGCGGCATGCCCTGGCCCCACCCTCCAGTGTCTCCCGGCCCAAT
ATTGGTGAGGGAGGGAAGGAGGGAGGGCGATGCACCAGAGGAAAAGTCCT
TGTCCTCCCCTACCTACTACATTTCTCAACCATACTGCTCCGTTCCCTCC
CTCCCCCCCTCCCTCCCTCCCTCTCCAGACGACGCCCTTCGACGCATCTC
TCTCATTCTACATCAGCACGTTGATATCTGCGAGGGCCGCCTGGCGCGCC
TCAAGGCTCTGAGGCGACGGCAGGTAGGGAAGGAGGGAGGAAGGGAGGGA
GGGAGGGTCGAAATGGGGAGGTATGGACGTACACTGAACTCTATTGTTCG
GTACATTTACGCACAGCAACAACGGCGACGGCAGGCCCAAGCAGAGGAGC
GGGAGAAGCGGCGGCAACACTACCTCCACCTCCAGCCGCACCAGCACCGC
CACCAGCAGCTGCAGCAGCAGCAGCAGGTGCGAACCTCGATTAAATACTT
TGTCCCTCCTTCCTCCCTTCCCTCCTCCCTCCCCGTAATTTCTCAACTTA
AGGGTCGGGCCAGCTTTCCTTTTGCTCGAAGGACTTTTCACCGCCCGATG
GAAAGGCACGCACGTGCTCCTCCCCCTCCTCCCTATCTATTCCCCTCCGC
GTACACCCACCCCTACTCCCACGCCTTACTCCCACCCATTCTAGCACTTG
CAGCGCACCGCCTCCCCCGCTCTCTCCTCCCCCACCTCCTCCTCCTCTGA
AGGCCACAGCCAGGGCCATAGCGACGACGTGGACCCGGAGGAGAACGACG
AAGAAGCCTCCTTCTGCACCACGCAAGAAGAAGAAGTATGCCCTCCTTTT
CTACGCCCTCCCTCCTTCCTTTCCTCCCTCCCTCCCTCCCTCCCTCGAAT
TTGGGTTGAGTCGTCACCATTTGACTGTCATACTTAATGTCGCTTTTCCC
CCTCCCTTCCTCCCTCCCTTCTTCCCCCACCCCGAGGACGAGGACGAGGA
CGAGGACGAGGAAGAAGAAATCAAGATGTTCGACCGCACCAAGATGCGCC
TCTTCGCGGAAGAAGAGTTTGTGTCCCCCCAGTACCTCTATCGCTTTGTG
CGCGTGCCCATCGCCCGCCCCGGGATCTGCTACAGGTGCGTGTGGGTGTG
TGGATCCCCCCTGTCGCCCTCCCTCCCGCCCTCCCTCCCTCCCCTACTTC
ATGTCCACCCATCCTCATCCACGTGGCCCATCCCGCACCCCATTTCCCGC
CTTCCTCCCCTCCCTCCCTCCCTTCCTCCTCCCTCAGCATGAAGCAAGTC
AAGCCGCACTACCACCTGCCCGCCTTGGACGAGATTTATCACTTCCTCCG
CACCCTCTTCAAGAAGGCCGCCCTCTCATCCGAATGTGCCATCGTCTGCC
TCATCTACGTAGAAAGGTAAGCCGTAGTTTCCTTCCCTCCCGCCCTCCCT
CTTTTTCTTCACGTGTAGAGCAAGGGAGAAGGGAGGGAGGGAGGGAACGA
AGACAAAGATCCCCACACCCCTTGACTCCGTACACTCACTCCATCCGCTT
AGACTGATGCAAGTAGCCCACATACCGCTCGTCGCTATCACATGGCGACC
CATCGTGCTCTGCGGCCTCCTCCTCGCCTCCAAAGGTACGAAGGTACCCC
CCCCTCTTCTCCCTCCTTTCTTCTCCCTCCTTCAAAGGGAGGCTTCCTCC
AAAACTCATTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGTCTGGCAAG
ACCTGTCTTCGTGGAACGTGGAGTTCTCCCAGATCTTTCCCCATTTCTCC
CTCCAGTCTATCAACCGCCTCGAGCGCCTCTTTATCAACCAGCTCAAGTG
GGACCTGTACATCTCCTCCTCGCTCTACGCGAAGTACTACTTCGCCTTGC
GGAGCCTTTACGAGAACGTACGAGACCTTACCTCCCTCCCTCCCTCCTTC
CCTTTCCCCCTCTCTCCCTTCCTCCTTTTCCTTTCAGAAGAGAGAATCGT
TCTGCTCACCTACCCGCCTTTATTTACGCTCTTGCTCTCCCTCCTTCCCT
CTCTCCCTCCCTCCCTTCCTCTCTCCCCTCCCGCAGAAGGACGTCCGTCG
TCGCTACAACACCTTCTTTATCAAGCCATCCCTCCACACGGCCCGAAAGC
CCCCCCCTCCTCCGCCACCTCCCTCCCTCCCGGGGGCCGTGCCCAAGGCA
GACGAGATCTCCCTGCGGACAGGGGTAGTGGCAGACGACCTCCGAGACAT
GTTTTCCAAAAGTGTATAG
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Coding sequence (CDS) from alignment at chr10:40340..43308-

>NO10G00130.1 ID=NO10G00130.1|Name=NO10G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr10:40340..43308- (Nannochloropsis oceanica)
ATGGGTGCCGCGGGCTCGCACCATGTCCACACCCTCTCCTCCTCCTACAC
CCATCAGCAGCAGCAATGGCGCGACGAACGGAAAGGTCGACGGAAAGAGC
GAGGGGGGAAGAAAGGAAGGAGAACGGCAGGGCATGGGAACGGAACGACA
GCGACAGAGATAGAAGGATTGATAAATGAGGTTAAGGTGGAAGGAGGAGA
AGAAATAGAAAGGGTGCTTTCACCACCACTTTCGATCCCTTTCTCGCAAG
GAAGCGGAGGCGGGGATGAAGGAGGAGAGGGGGGAGGAGGAGGAGGAGGA
GGAGGAGGAACAGGGGGGGGGGAGAAGGGCGAGGAGGACGAGAAGTTCAC
GCCTTCCTATGCGGCCTACACTCCGTCCTCGCGCAAGACGCACGGGCTGA
GCTACAAGACCCCCGAGCTGCGGCAGCGGCATGCCCTGGCCCCACCCTCC
AGTGTCTCCCGGCCCAATATTGACGACGCCCTTCGACGCATCTCTCTCAT
TCTACATCAGCACGTTGATATCTGCGAGGGCCGCCTGGCGCGCCTCAAGG
CTCTGAGGCGACGGCAGCAACAACGGCGACGGCAGGCCCAAGCAGAGGAG
CGGGAGAAGCGGCGGCAACACTACCTCCACCTCCAGCCGCACCAGCACCG
CCACCAGCAGCTGCAGCAGCAGCAGCAGCACTTGCAGCGCACCGCCTCCC
CCGCTCTCTCCTCCCCCACCTCCTCCTCCTCTGAAGGCCACAGCCAGGGC
CATAGCGACGACGTGGACCCGGAGGAGAACGACGAAGAAGCCTCCTTCTG
CACCACGCAAGAAGAAGAAGACGAGGACGAGGACGAGGACGAGGAAGAAG
AAATCAAGATGTTCGACCGCACCAAGATGCGCCTCTTCGCGGAAGAAGAG
TTTGTGTCCCCCCAGTACCTCTATCGCTTTGTGCGCGTGCCCATCGCCCG
CCCCGGGATCTGCTACAGCATGAAGCAAGTCAAGCCGCACTACCACCTGC
CCGCCTTGGACGAGATTTATCACTTCCTCCGCACCCTCTTCAAGAAGGCC
GCCCTCTCATCCGAATGTGCCATCGTCTGCCTCATCTACGTAGAAAGACT
GATGCAAGTAGCCCACATACCGCTCGTCGCTATCACATGGCGACCCATCG
TGCTCTGCGGCCTCCTCCTCGCCTCCAAAGTCTGGCAAGACCTGTCTTCG
TGGAACGTGGAGTTCTCCCAGATCTTTCCCCATTTCTCCCTCCAGTCTAT
CAACCGCCTCGAGCGCCTCTTTATCAACCAGCTCAAGTGGGACCTGTACA
TCTCCTCCTCGCTCTACGCGAAGTACTACTTCGCCTTGCGGAGCCTTTAC
GAGAACAAGGACGTCCGTCGTCGCTACAACACCTTCTTTATCAAGCCATC
CCTCCACACGGCCCGAAAGCCCCCCCCTCCTCCGCCACCTCCCTCCCTCC
CGGGGGCCGTGCCCAAGGCAGACGAGATCTCCCTGCGGACAGGGGTAGTG
GCAGACGACCTCCGAGACATGTTTTCCAAAAGTGTATAG
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Synonyms
Publications