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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:29963..32691 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00100.3 vs.
Match: EWM25227.1 (Transmembrane transporter protein, chloroquine resistant [Nannochloropsis gaditana]) HSP 1 Score: 511.5 bits (1316), Expect = 2.400e-141 Identity = 268/408 (65.69%), Postives = 306/408 (75.00%), Query Frame = 0
Query: 1 MYEAYGPKGAFFVSTGVNVLYVIYGGLLLYPRMYFSDSVTPAMQALPKHRFLIMGFLDSCGTFLAAMGAVYTPGSVQTLLNQTLIPITMLVSFLYLKTRFTLIQLGGAAFVLAGAGITVLPTFWEGHKGGGEGIGGRPAPSRWYANLIFFLSNVPVACSQVSSLSLIHSSFNRPQYKEKAFKRDRVDVLYLTQWVSVFQLLFGLGLAPLQALPGIGSAHGVPISSIPSSFRRSWQCFLQTPTSGCADQHPSPSLLLLGFCGVNLTFNTAGLFVSKHGSAILNVITYAVLLPITTLLFSLHPLMGAYTEPLRATTVVGLLVVVLGFYLYQEPVLDLEKRSMAEG------------------------REEVTAEEEEEGMKEGEWDMRVRVPSFQERVVAGLGPAVFQ 385
MY+ YG GAFFVSTGVNVLY+IYGGLLLYPRM F+DS+TPAM+ALPK RF+IMGFLD CGTFLAAMGAVYTPGSVQTLLNQTLIP TM+VS +L+T F+ +QL GAA VL GA +TVLP F G G P+ SRWYANL+FF SN+PVACSQV YKE+AFKRD VDVLYLTQWVSVFQ FGL LAPLQALPGIGSAHGVP+SSIP++F SW CFL+ PTS C Q P+PSLLLL FC VNL FNT GL+VSKHGSA+LNVITYAVLLP+TTL+FSL PLMGA+TEPL A+TV+GLL+V+LGFYLYQEP+L L +R +G EE EEEEE +E + M + VPSFQERVVAGLGPA++Q
Sbjct: 63 MYQVYGSDGAFFVSTGVNVLYIIYGGLLLYPRMLFTDSITPAMKALPKRRFIIMGFLDCCGTFLAAMGAVYTPGSVQTLLNQTLIPTTMIVSACFLRTHFSNVQLAGAALVLMGAAVTVLPAFITAESDSNNGHGASPSQSRWYANLVFFASNLPVACSQV--------------YKERAFKRDSVDVLYLTQWVSVFQFFFGLALAPLQALPGIGSAHGVPLSSIPTAFLESWDCFLEKPTSVCHGQWPAPSLLLLAFCAVNLVFNTGGLYVSKHGSAVLNVITYAVLLPVTTLIFSLRPLMGAFTEPLSASTVLGLLLVLLGFYLYQEPMLWLGRRDHGKGVDGGDEKGKVLREGLKEDGGGAQTVEEEEEEEEEEEDEEEQGTMGIHVPSFQERVVAGLGPAIYQ 456
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00100.3 ID=NO10G00100.3|Name=NO10G00100.3|organism=Nannochloropsis oceanica|type=mRNA|length=2630bp
GTGTGCTGAACCTCTTATACCACTCGCTTATCCTCGCTCATTCCCCATGG
GGAAATTTATGTCAGCACAGGAAATCAGCACGGAAGGAGGCCACCCAATG
CCGAACGCATCAAATGCCGCCGCCTCTCCCAGAACCAAGGTAAGCCGTCG
CCTCCTCTTCTAGTGCGTGGTGATTTGTGCAAAAGTGCAAGGCCTGTAGC
ACATGTTAAAGCTACAGAAGCAAAAAGAGAGGCCCAAAATACCTGTAATT
AATACCTTGCCCACCGCCTTAGCCCTTACCCTCCCTTAGTCTAGCACCCG
CCGCAACGCTAACCCTAACACTACACCTTACTCACAACCTTGTCTTCCCC
ATCTCTTCCCTATCCAACAGTACGGCACCCTCCCTTGCACGCCCCCCAGC
ACAGCCACCGTCGCTGCTCACCCTGCGTCTACCCTCGACTCCGCCACGGT
CCTTTCCCTGGCCCTCATCGTGGTCCTGGCAGTCGGCTCCTGCAATTCAT
TGACTTACAAAATCATGTACGAAGCCTACGGGCCCAAGGGCGCTTTCTTT
GTCTCAACGGGCGTCAATGTCCTGTATGTGATTTATGGAGGCCTCCTGCT
CTACCCCCGCATGTATTTCTCCGACAGCGTCACCCCCGCGATGCAAGCCC
TCCCCAAACATCGCTTTCTCATCATGGGCTTCCTCGACAGCTGCGGCACC
TTCTTAGCGGCCATGGGTGCCGTCTACACCCCTGGAAGCGTGCAAACCTT
GCTCAACCAAACCCTCATTCCCATCACCATGCTTGTCTCCTTCCTCTACC
TCAAGACGAGATTTACGCTCATCCAGCTCGGAGGCGCGGCCTTTGTCCTG
GCAGGGGCGGGTATCACAGTCTTACCCACCTTCTGGGAGGGTCACAAGGG
GGGCGGAGAAGGAATTGGAGGTAGACCGGCCCCATCGCGATGGTATGCGA
ACCTGATTTTCTTCCTTAGCAACGTCCCCGTGGCTTGCTCCCAAGTGTCC
TCTCTTTCCTTAATCCATTCCTCATTTAATCGCCCACAGTACAAGGAGAA
GGCTTTCAAGCGGGACCGCGTCGACGTCCTCTACCTCACCCAGTGGGTCT
CCGTCTTCCAACTCCTCTTCGGTCTGGGCCTCGCCCCCCTCCAAGCCCTG
CCTGGCATTGGCAGCGCGCATGGCGTCCCCATTTCCTCTATCCCCTCCTC
CTTCAGGCGCAGCTGGCAATGCTTCCTGCAAACGCCCACGTCAGGCTGTG
CCGACCAGCACCCGTCCCCCTCCCTTCTCCTCCTTGGATTTTGCGGCGTT
AACCTCACTTTCAACACGGCAGGCCTGTTCGTCTCAAAGCACGGGTCCGC
CATTCTTAATGTGATCACGTACGCCGTACTCCTGCCCATTACCACCCTCC
TCTTCTCCCTCCATCCCTTGATGGGCGCCTACACCGAGCCTTTGCGAGCA
ACGACGGTGGTGGGGCTACTGGTCGTCGTGCTCGGCTTCTATCTCTATCA
GGAACCAGTCTTGGATCTGGAGAAAAGGAGCATGGCAGAAGGGAGAGAAG
AGGTGACGGCTGAGGAGGAGGAAGAGGGGATGAAGGAGGGGGAATGGGAC
ATGCGTGTGAGGGTGCCGTCGTTTCAGGAGAGGGTAGTGGCAGGACTAGG
GCCAGCTGTGTTCCAGCAGTCGCATGGGAGCCAAGAGTATAACGCGCGTT
ACCACCACCACCACCACCATGACACTAAAACGGCGGTGGACGGCACGGCT
CGAGAGGGTGTTTAGCAGTGTAAAGACAATGTAGATCAAATGGTACAAAT
GTTGAGTATCAAGTTTGCTGGCGTCATAATTTTCACTGGTCTTGGGATTC
CATTGGTTACTTCATTCCACCAGTCATTCCTGCTCCTTTCTCTCTGTCTT
ACAACTTTGACTGCTTGCGTCTCTTCTTTGTCTTCCTTTCCTGACCCTCT
TCCTCCGTACGATCTCTTTACATGCTTCTTTCTCCTCCCCCCCCCCTCTT
TTTCCACTCCACCCCAACCCTCCTTACTTAGCCGCCGTGCTTTCTGCCTC
CGGATGCTCCTTCAACCATTTGGGGCTATACACTGCAGGAACTGCGTCGA
TCAACCCCGCCATAATCAAATCATTCTCCGTCAGTCCTCCCACGGCATGC
GTGTACAACACAATTTCCACCTCCCTATAGCTCGTCAAGTGTAAGTCCGG
GTGGTGGCCTTCCGCTTCGGCCACGGCCCCCACAGCGTTAAGGAAAGCAA
GTGCGGCAGCGAAGTTCTTGGCGATGAACGCACGGGACAGGCGCTTGTGG
TCGTCGCTTGCCTTCCACAAGGGCAGAGAGGGAAGGACAGCCTGCACGCG
CTCAAGCGGTACGGCGGGGAGGCCGCCTTCGCATGGGACGCAATGCTTGT
GAGCGTCCCGGGAACAGGTCTCGCTCATGCTATTGGAGCTACTGGTGGCA
GACGACAAAAACGCAGCAGCGGTGGCAATTACGATAAAAATAAGGGAAAC
GCCGAGGTTTAGGTGCATGCACGGCGGTGCTGAAGTGATGCTGTGTGTGA
GCTGTTGCAGTGTGAGATGCTATGTGACAGCAGTGAAGTTGGAGGGCCAT
GCTCGTCGCCGAAAAGCATTTTTTTTTTAA back to topprotein sequence of NO10G00100.3 >NO10G00100.3-protein ID=NO10G00100.3-protein|Name=NO10G00100.3|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MYEAYGPKGAFFVSTGVNVLYVIYGGLLLYPRMYFSDSVTPAMQALPKHR
FLIMGFLDSCGTFLAAMGAVYTPGSVQTLLNQTLIPITMLVSFLYLKTRF
TLIQLGGAAFVLAGAGITVLPTFWEGHKGGGEGIGGRPAPSRWYANLIFF
LSNVPVACSQVSSLSLIHSSFNRPQYKEKAFKRDRVDVLYLTQWVSVFQL
LFGLGLAPLQALPGIGSAHGVPISSIPSSFRRSWQCFLQTPTSGCADQHP
SPSLLLLGFCGVNLTFNTAGLFVSKHGSAILNVITYAVLLPITTLLFSLH
PLMGAYTEPLRATTVVGLLVVVLGFYLYQEPVLDLEKRSMAEGREEVTAE
EEEEGMKEGEWDMRVRVPSFQERVVAGLGPAVFQQSHGSQEYNARYHHHH
HHDTKTAVDGTAREGV* back to topmRNA from alignment at chr10:29963..32691+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00100.3 ID=NO10G00100.3|Name=NO10G00100.3|organism=Nannochloropsis oceanica|type=mRNA|length=2729bp|location=Sequence derived from alignment at chr10:29963..32691+ (Nannochloropsis oceanica)
GTGTGCTGAACCTCTTATACCACTCGCTTATCCTCGCTCATTCCCCATGG
GGAAATTTATGTCAGCACAGGAAATCAGCACGGAAGGAGGCCACCCAATG
CCGAACGCATCAAATGCCGCCGCCTCTCCCAGAACCAAGGTAAGCCGTCG
CCTCCTCTTCTAGTGCGTGGTGATTTGTGCAAAAGTGCAAGGCCTGTAGC
ACATGTTAAAGCTACAGAAGCAAAAAGAGAGGCCCAAAATACCTGTAATT
AATACCTTGCCCACCGCCTTAGCCCTTACCCTCCCTTAGTCTAGCACCCG
CCGCAACGCTAACCCTAACACTACACCTTACTCACAACCTTGTCTTCCCC
ATCTCTTCCCTATCCAACAGTACGGCACCCTCCCTTGCACGCCCCCCAGC
ACAGCCACCGTCGCTGCTCACCCTGCGTCTACCCTCGACTCCGCCACGGT
CCTTTCCCTGGCCCTCATCGTGGTCCTGGCAGTCGGCTCCTGCAATTCAT
TGACTTACAAAATCATGTACGAAGCCTACGGGCCCAAGGGCGCTTTCTTT
GTCTCAACGGGCGTCAATGTCCTGTATGTGATTTATGGAGGCCTCCTGCT
CTACCCCCGCATGTATTTCTCCGACAGCGTCACCCCCGCGATGCAAGCCC
TCCCCAAACATCGCTTTCTCATCATGGGCTTCCTCGACAGCTGCGGCACC
TTCTTAGCGGCCATGGGTGCCGTCTACACCCCTGGAAGCGTGCAAACCTT
GCTCAACCAAACCCTCATTCCCATCACCATGCTTGTCTCCTTCCTCTACC
TCAAGACGAGATTTACGCTCATCCAGCTCGGAGGCGCGGCCTTTGTCCTG
GCAGGGGCGGGTATCACAGTCTTACCCACCTTCTGGGAGGGTCACAAGGG
GGGCGGAGAAGGAATTGGAGGTAGACCGGCCCCATCGCGATGGTATGCGA
ACCTGATTTTCTTCCTTAGCAACGTCCCCGTGGCTTGCTCCCAAGTGGTA
AGGTCTACAAGGTGGAAAGGGGGAAGAAGGAAGGCAGGAAGATCAGGATG
TCGATTTCCACGACGAAGGTTTCAGCATCCATTCACACTCGTCTAGTCCT
CTCTTTCCTTAATCCATTCCTCATTTAATCGCCCACAGTACAAGGAGAAG
GCTTTCAAGCGGGACCGCGTCGACGTCCTCTACCTCACCCAGTGGGTCTC
CGTCTTCCAACTCCTCTTCGGTCTGGGCCTCGCCCCCCTCCAAGCCCTGC
CTGGCATTGGCAGCGCGCATGGCGTCCCCATTTCCTCTATCCCCTCCTCC
TTCAGGCGCAGCTGGCAATGCTTCCTGCAAACGCCCACGTCAGGCTGTGC
CGACCAGCACCCGTCCCCCTCCCTTCTCCTCCTTGGATTTTGCGGCGTTA
ACCTCACTTTCAACACGGCAGGCCTGTTCGTCTCAAAGCACGGGTCCGCC
ATTCTTAATGTGATCACGTACGCCGTACTCCTGCCCATTACCACCCTCCT
CTTCTCCCTCCATCCCTTGATGGGCGCCTACACCGAGCCTTTGCGAGCAA
CGACGGTGGTGGGGCTACTGGTCGTCGTGCTCGGCTTCTATCTCTATCAG
GAACCAGTCTTGGATCTGGAGAAAAGGAGCATGGCAGAAGGGAGAGAAGA
GGTGACGGCTGAGGAGGAGGAAGAGGGGATGAAGGAGGGGGAATGGGACA
TGCGTGTGAGGGTGCCGTCGTTTCAGGAGAGGGTAGTGGCAGGACTAGGG
CCAGCTGTGTTCCAGCAGTCGCATGGGAGCCAAGAGTATAACGCGCGTTA
CCACCACCACCACCACCATGACACTAAAACGGCGGTGGACGGCACGGCTC
GAGAGGGTGTTTAGCAGTGTAAAGACAATGTAGATCAAATGGTACAAATG
TTGAGTATCAAGTTTGCTGGCGTCATAATTTTCACTGGTCTTGGGATTCC
ATTGGTTACTTCATTCCACCAGTCATTCCTGCTCCTTTCTCTCTGTCTTA
CAACTTTGACTGCTTGCGTCTCTTCTTTGTCTTCCTTTCCTGACCCTCTT
CCTCCGTACGATCTCTTTACATGCTTCTTTCTCCTCCCCCCCCCCTCTTT
TTCCACTCCACCCCAACCCTCCTTACTTAGCCGCCGTGCTTTCTGCCTCC
GGATGCTCCTTCAACCATTTGGGGCTATACACTGCAGGAACTGCGTCGAT
CAACCCCGCCATAATCAAATCATTCTCCGTCAGTCCTCCCACGGCATGCG
TGTACAACACAATTTCCACCTCCCTATAGCTCGTCAAGTGTAAGTCCGGG
TGGTGGCCTTCCGCTTCGGCCACGGCCCCCACAGCGTTAAGGAAAGCAAG
TGCGGCAGCGAAGTTCTTGGCGATGAACGCACGGGACAGGCGCTTGTGGT
CGTCGCTTGCCTTCCACAAGGGCAGAGAGGGAAGGACAGCCTGCACGCGC
TCAAGCGGTACGGCGGGGAGGCCGCCTTCGCATGGGACGCAATGCTTGTG
AGCGTCCCGGGAACAGGTCTCGCTCATGCTATTGGAGCTACTGGTGGCAG
ACGACAAAAACGCAGCAGCGGTGGCAATTACGATAAAAATAAGGGAAACG
CCGAGGTTTAGGTGCATGCACGGCGGTGCTGAAGTGATGCTGTGTGTGAG
CTGTTGCAGTGTGAGATGCTATGTGACAGCAGTGAAGTTGGAGGGCCATG
CTCGTCGCCGAAAAGCATTTTTTTTTTAA back to topCoding sequence (CDS) from alignment at chr10:29963..32691+ >NO10G00100.3 ID=NO10G00100.3|Name=NO10G00100.3|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr10:29963..32691+ (Nannochloropsis oceanica)
ATGTACGAAGCCTACGGGCCCAAGGGCGCTTTCTTTGTCTCAACGGGCGT
CAATGTCCTGTATGTGATTTATGGAGGCCTCCTGCTCTACCCCCGCATGT
ATTTCTCCGACAGCGTCACCCCCGCGATGCAAGCCCTCCCCAAACATCGC
TTTCTCATCATGGGCTTCCTCGACAGCTGCGGCACCTTCTTAGCGGCCAT
GGGTGCCGTCTACACCCCTGGAAGCGTGCAAACCTTGCTCAACCAAACCC
TCATTCCCATCACCATGCTTGTCTCCTTCCTCTACCTCAAGACGAGATTT
ACGCTCATCCAGCTCGGAGGCGCGGCCTTTGTCCTGGCAGGGGCGGGTAT
CACAGTCTTACCCACCTTCTGGGAGGGTCACAAGGGGGGCGGAGAAGGAA
TTGGAGGTAGACCGGCCCCATCGCGATGGTATGCGAACCTGATTTTCTTC
CTTAGCAACGTCCCCGTGGCTTGCTCCCAAGTGTCCTCTCTTTCCTTAAT
CCATTCCTCATTTAATCGCCCACAGTACAAGGAGAAGGCTTTCAAGCGGG
ACCGCGTCGACGTCCTCTACCTCACCCAGTGGGTCTCCGTCTTCCAACTC
CTCTTCGGTCTGGGCCTCGCCCCCCTCCAAGCCCTGCCTGGCATTGGCAG
CGCGCATGGCGTCCCCATTTCCTCTATCCCCTCCTCCTTCAGGCGCAGCT
GGCAATGCTTCCTGCAAACGCCCACGTCAGGCTGTGCCGACCAGCACCCG
TCCCCCTCCCTTCTCCTCCTTGGATTTTGCGGCGTTAACCTCACTTTCAA
CACGGCAGGCCTGTTCGTCTCAAAGCACGGGTCCGCCATTCTTAATGTGA
TCACGTACGCCGTACTCCTGCCCATTACCACCCTCCTCTTCTCCCTCCAT
CCCTTGATGGGCGCCTACACCGAGCCTTTGCGAGCAACGACGGTGGTGGG
GCTACTGGTCGTCGTGCTCGGCTTCTATCTCTATCAGGAACCAGTCTTGG
ATCTGGAGAAAAGGAGCATGGCAGAAGGGAGAGAAGAGGTGACGGCTGAG
GAGGAGGAAGAGGGGATGAAGGAGGGGGAATGGGACATGCGTGTGAGGGT
GCCGTCGTTTCAGGAGAGGGTAGTGGCAGGACTAGGGCCAGCTGTGTTCC
AGCAGTCGCATGGGAGCCAAGAGTATAACGCGCGTTACCACCACCACCAC
CACCATGACACTAAAACGGCGGTGGACGGCACGGCTCGAGAGGGTGTTTA
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