NO09G04260.1, NO09G04260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04260.1
Unique NameNO09G04260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1301
Alignment locationchr9:1274152..1275452 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1274152..1275452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G04260.1 vs.
Match: EWM25019.1 (glycosyltransferase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 216.1 bits (549), Expect = 1.800e-52
Identity = 129/314 (41.08%), Postives = 185/314 (58.92%), Query Frame = 0 
Query:   63 EMLKRRSQNGTIVLVGFTGGYSDMLLNMMCRWKELGVANYAIIAFDMPGVVFCWERSLPCFYPSPE--------------------PPESATTSSHF----SSPSEKAAAVHEWNSDGFRHVTKLKSQQVLRILKQGYNVLWTDVDIFWKANPMPDLLRLLAK-DNYDIVIQSDAVVEKEAS---AWINSGFYYVKQSEHTVRAFQEIVKEATAAHDQSEQPSFNRVLC----QRPLDSNNCINDDISVLTHVLDRWKYAHGAVPILSKNLVDA-DNGVAIMHCNYRVGFEEKKKCFNAGNMWLLNGKDNTCRH 344
            +++ +++++ T+VL+GF  GY DMLLNM+CR ++L V NY I AFD   + FC ++ LPCF  + E                      ES T  +      S P +  AA H + + GFR +TKLKSQQVLRIL+QGY+VLW+DVDIFWK NP+P +L  + +    DI IQS+A  E+ +      INSGFY  K +  TV AF++IV+ A ++   SEQPSF  VLC    Q    S+ C+N +I V T +L R  Y +GA+  + K +  A ++ VAI+H N+  G + K + F   +MWLL+  D TC++
Sbjct:  502 QLMSQQAKDKTVVLIGFNYGYQDMLLNMVCRLQQLAVPNYVIAAFDAEAMAFCRQQVLPCFPVNAEIAADADMVLKNHGGGKDAKAAGESKTAKTPGTQSPSKPVDLQAAAHAFGTKGFRALTKLKSQQVLRILEQGYDVLWSDVDIFWKINPIPGVLEEMKEGGGVDIAIQSNAPPEEASENGYRRINSGFYMAKSNSPTVEAFRQIVEHARSS-TLSEQPSFYTVLCGDEMQFVSGSSYCLNTEIPVKTRLLSREIYPNGAMVEVVKGVTPATEDDVAIVHFNWLEGHDAKVESFVNASMWLLHDDDMTCKY 814
The following BLAST results are available for this feature:
BLAST of NO09G04260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25019.11.800e-5241.08glycosyltransferase-like protein [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04260NO09G04260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04260.1NO09G04260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04260.1.cds1NO09G04260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04260.1 ID=NO09G04260.1|Name=NO09G04260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
AAAAGTGATGCTCAAGGGAGGGAAACGGACCCGCAGGGTTCATGACGAGC
CTCAACTTGGGACAAGGAAGACTCGAGGGTCTACTTGCGCCAGCAGCCAG
ATTTTCCCCAAGTGCCATATGGTGGGCTACAACAAGCGTCGTTTTTCTAA
TACTTTACACAGGTAGCTATTACCAATATACAACCATACACCCACAACCT
CAAAGAAACAACAACAGCACATTTACTGGGTAAATGTCAAGGAAGGAGAA
GAAAAGATCCAAATGGAGCCAACAGAGCATTGTAGCATCTATTTTATGGA
TAATATCCATGGGAACATTGTACAAATGGCTGGTGCATGTTCATCCACAG
GAGTTTCTGAGGAGAAATACGAGCGTTCCGCTCAGCATAACACCTAGCTT
GTTGCAGTCCCACCTGCCTGAGATGCTGAAGCGCCGATCCCAAAACGGGA
CAATTGTTCTAGTCGGGTTCACAGGGGGGTACAGTGATATGCTACTGAAT
ATGATGTGTCGCTGGAAGGAGTTGGGAGTTGCCAACTACGCCATTATCGC
GTTCGACATGCCAGGTGTTGTGTTTTGCTGGGAACGCTCGCTGCCATGTT
TCTATCCCTCACCAGAGCCACCTGAAAGCGCCACAACAAGCTCTCATTTT
TCATCTCCTTCTGAGAAGGCTGCTGCGGTCCATGAGTGGAACAGCGACGG
CTTTAGGCACGTCACCAAGCTTAAGTCTCAGCAGGTGCTACGTATCCTCA
AGCAGGGGTACAATGTCCTCTGGACAGATGTGGATATCTTTTGGAAGGCG
AACCCAATGCCAGACTTGCTGCGCTTGCTGGCCAAGGACAACTATGATAT
CGTAATTCAGTCCGATGCGGTGGTCGAAAAGGAGGCTAGCGCATGGATTA
ATTCGGGTTTCTATTATGTGAAACAATCCGAACACACCGTGCGTGCCTTT
CAAGAGATTGTAAAAGAGGCCACCGCGGCGCATGACCAATCCGAGCAGCC
ATCTTTCAACCGCGTTCTCTGCCAGCGTCCATTGGATTCTAACAACTGCA
TCAACGACGATATTTCTGTGCTCACGCATGTGTTAGATCGCTGGAAGTAC
GCGCATGGCGCAGTCCCTATCCTCAGCAAAAATCTGGTCGACGCGGACAA
TGGCGTGGCTATAATGCACTGCAACTATCGTGTTGGATTTGAGGAGAAAA
AGAAATGTTTTAATGCTGGGAATATGTGGCTCCTAAATGGGAAAGATAAT
ACCTGTCGGCACACAAAATTTGAGCAGCACAATATCTCTACTTTTAGATA
A
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protein sequence of NO09G04260.1

>NO09G04260.1-protein ID=NO09G04260.1-protein|Name=NO09G04260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MSRKEKKRSKWSQQSIVASILWIISMGTLYKWLVHVHPQEFLRRNTSVPL
SITPSLLQSHLPEMLKRRSQNGTIVLVGFTGGYSDMLLNMMCRWKELGVA
NYAIIAFDMPGVVFCWERSLPCFYPSPEPPESATTSSHFSSPSEKAAAVH
EWNSDGFRHVTKLKSQQVLRILKQGYNVLWTDVDIFWKANPMPDLLRLLA
KDNYDIVIQSDAVVEKEASAWINSGFYYVKQSEHTVRAFQEIVKEATAAH
DQSEQPSFNRVLCQRPLDSNNCINDDISVLTHVLDRWKYAHGAVPILSKN
LVDADNGVAIMHCNYRVGFEEKKKCFNAGNMWLLNGKDNTCRHTKFEQHN
ISTFR*
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mRNA from alignment at chr9:1274152..1275452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04260.1 ID=NO09G04260.1|Name=NO09G04260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at chr9:1274152..1275452+ (Nannochloropsis oceanica)
AAAAGTGATGCTCAAGGGAGGGAAACGGACCCGCAGGGTTCATGACGAGC
CTCAACTTGGGACAAGGAAGACTCGAGGGTCTACTTGCGCCAGCAGCCAG
ATTTTCCCCAAGTGCCATATGGTGGGCTACAACAAGCGTCGTTTTTCTAA
TACTTTACACAGGTAGCTATTACCAATATACAACCATACACCCACAACCT
CAAAGAAACAACAACAGCACATTTACTGGGTAAATGTCAAGGAAGGAGAA
GAAAAGATCCAAATGGAGCCAACAGAGCATTGTAGCATCTATTTTATGGA
TAATATCCATGGGAACATTGTACAAATGGCTGGTGCATGTTCATCCACAG
GAGTTTCTGAGGAGAAATACGAGCGTTCCGCTCAGCATAACACCTAGCTT
GTTGCAGTCCCACCTGCCTGAGATGCTGAAGCGCCGATCCCAAAACGGGA
CAATTGTTCTAGTCGGGTTCACAGGGGGGTACAGTGATATGCTACTGAAT
ATGATGTGTCGCTGGAAGGAGTTGGGAGTTGCCAACTACGCCATTATCGC
GTTCGACATGCCAGGTGTTGTGTTTTGCTGGGAACGCTCGCTGCCATGTT
TCTATCCCTCACCAGAGCCACCTGAAAGCGCCACAACAAGCTCTCATTTT
TCATCTCCTTCTGAGAAGGCTGCTGCGGTCCATGAGTGGAACAGCGACGG
CTTTAGGCACGTCACCAAGCTTAAGTCTCAGCAGGTGCTACGTATCCTCA
AGCAGGGGTACAATGTCCTCTGGACAGATGTGGATATCTTTTGGAAGGCG
AACCCAATGCCAGACTTGCTGCGCTTGCTGGCCAAGGACAACTATGATAT
CGTAATTCAGTCCGATGCGGTGGTCGAAAAGGAGGCTAGCGCATGGATTA
ATTCGGGTTTCTATTATGTGAAACAATCCGAACACACCGTGCGTGCCTTT
CAAGAGATTGTAAAAGAGGCCACCGCGGCGCATGACCAATCCGAGCAGCC
ATCTTTCAACCGCGTTCTCTGCCAGCGTCCATTGGATTCTAACAACTGCA
TCAACGACGATATTTCTGTGCTCACGCATGTGTTAGATCGCTGGAAGTAC
GCGCATGGCGCAGTCCCTATCCTCAGCAAAAATCTGGTCGACGCGGACAA
TGGCGTGGCTATAATGCACTGCAACTATCGTGTTGGATTTGAGGAGAAAA
AGAAATGTTTTAATGCTGGGAATATGTGGCTCCTAAATGGGAAAGATAAT
ACCTGTCGGCACACAAAATTTGAGCAGCACAATATCTCTACTTTTAGATA
A
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Coding sequence (CDS) from alignment at chr9:1274152..1275452+

>NO09G04260.1 ID=NO09G04260.1|Name=NO09G04260.1|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at chr9:1274152..1275452+ (Nannochloropsis oceanica)
ATGTCAAGGAAGGAGAAGAAAAGATCCAAATGGAGCCAACAGAGCATTGT
AGCATCTATTTTATGGATAATATCCATGGGAACATTGTACAAATGGCTGG
TGCATGTTCATCCACAGGAGTTTCTGAGGAGAAATACGAGCGTTCCGCTC
AGCATAACACCTAGCTTGTTGCAGTCCCACCTGCCTGAGATGCTGAAGCG
CCGATCCCAAAACGGGACAATTGTTCTAGTCGGGTTCACAGGGGGGTACA
GTGATATGCTACTGAATATGATGTGTCGCTGGAAGGAGTTGGGAGTTGCC
AACTACGCCATTATCGCGTTCGACATGCCAGGTGTTGTGTTTTGCTGGGA
ACGCTCGCTGCCATGTTTCTATCCCTCACCAGAGCCACCTGAAAGCGCCA
CAACAAGCTCTCATTTTTCATCTCCTTCTGAGAAGGCTGCTGCGGTCCAT
GAGTGGAACAGCGACGGCTTTAGGCACGTCACCAAGCTTAAGTCTCAGCA
GGTGCTACGTATCCTCAAGCAGGGGTACAATGTCCTCTGGACAGATGTGG
ATATCTTTTGGAAGGCGAACCCAATGCCAGACTTGCTGCGCTTGCTGGCC
AAGGACAACTATGATATCGTAATTCAGTCCGATGCGGTGGTCGAAAAGGA
GGCTAGCGCATGGATTAATTCGGGTTTCTATTATGTGAAACAATCCGAAC
ACACCGTGCGTGCCTTTCAAGAGATTGTAAAAGAGGCCACCGCGGCGCAT
GACCAATCCGAGCAGCCATCTTTCAACCGCGTTCTCTGCCAGCGTCCATT
GGATTCTAACAACTGCATCAACGACGATATTTCTGTGCTCACGCATGTGT
TAGATCGCTGGAAGTACGCGCATGGCGCAGTCCCTATCCTCAGCAAAAAT
CTGGTCGACGCGGACAATGGCGTGGCTATAATGCACTGCAACTATCGTGT
TGGATTTGAGGAGAAAAAGAAATGTTTTAATGCTGGGAATATGTGGCTCC
TAAATGGGAAAGATAATACCTGTCGGCACACAAAATTTGAGCAGCACAAT
ATCTCTACTTTTAGATAA
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Synonyms
Publications