NO09G04250.1, NO09G04250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04250.1
Unique NameNO09G04250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1604
Alignment locationchr9:1267136..1268988 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1267136..1268988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G04250.1 vs.
Match: XP_005852461.1 (hypothetical protein NGA_2060000, partial [Nannochloropsis gaditana CCMP526]; EKU23369.1 hypothetical protein NGA_2060000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 216.5 bits (550), Expect = 1.200e-52
Identity = 119/266 (44.74%), Postives = 167/266 (62.78%), Query Frame = 0 
Query:   58 RLAMCFFGQVKNIADDHIRRFMEHVLHPLITYYPQIDVYLHTYNIERFSNPRNGEHNITIDVVSSLEHLVTTLSQMGPPGRISLKGLNITEPLD-ADRHFRPLEFYLSRGDPWDNEGISMPNLLRQLYSLDQVTQQWE-SDKEPNYYTAVIYTRPDLLFHTRLPL-----VASENGARHILSPNSIYAAPFDDELGQALNDRFAFGAPNVMRIYGHRMRYIEPYFDRYPEASLWSEKFLHKVMIQMYGFAYTRLE--NFFFSRVRA 315
            R+A+CFFGQVKN+    +  F+++V+ PL+ Y+P IDVYLHTYNI  F NPRN E N+T+ V  SL  + + L ++  PG + ++ ++IT+    ADR FRPL FYLS GDPW NEG+SM   LRQLYSL+ VT+ WE S    + Y AV+Y RPDLLF + LP+     V  E  ++ IL P ++++  FD  +   +NDRFA G P+VM +YG+R   I+ + +  P   L +E +L  VM      +  R E  +F F R+RA
Sbjct:   26 RVALCFFGQVKNVNHVQLTSFIDNVMRPLLEYFPSIDVYLHTYNIVSFHNPRNLEKNVTLHVADSLNLIFSELREL--PG-VKIRNISITQDAKAADRSFRPLNFYLSHGDPWRNEGLSMFYFLRQLYSLETVTRLWEKSPSTGDRYQAVVYVRPDLLFESPLPVADTLDVIDEEHSKRILWPRTVFSPNFD--VFGGMNDRFALGTPDVMSVYGYRKNDIDRFMEENPTKHLHAESYLAWVMKD----SLIRCETLDFSFKRIRA 282
The following BLAST results are available for this feature:
BLAST of NO09G04250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852461.11.200e-5244.74hypothetical protein NGA_2060000, partial [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04250NO09G04250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04250.1NO09G04250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04250.1.cds1NO09G04250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04250.1.cds2NO09G04250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04250.1 ID=NO09G04250.1|Name=NO09G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1604bp
AACGCGCTGCTTATCACAGTGCTTATCCTTTGCATTATTCGAGAGAATAT
TCATCTTCTTGGAGGAGGAAGGCCAACCGCGACTCAGGAGGCAATTCAGC
AACAGTCAAGCACAAAGATCCCATTAATACCAGGACAGACTGTAAAGGTA
GGAGGCCTCACTGCCGAAGACGTTAACGGTAACATGGTGCTGTCAGAAAC
AGAATATACCTCCAAAGAGAGGCAGCAAATGAGAGACTTAGTACAGTTTC
TTGGCTCCACTCCTCCAGCCCCCCCGCTTCGGTCAAGTACGATTCTTGTT
CCGGAGAATAATCGTAATGCGATGGACCCGTCAAATGAGTCACAAGATCA
GCCACGCCTCGCCATGTGCTTCTTTGGGCAGGTCAAGAATATTGCAGACG
ACCACATCCGAAGGTTTATGGAGCACGTTTTACATCCTTTGATAACGTAC
TACCCGCAAATTGACGTGTATTTACACACATACAATATTGAGCGCTTCTC
TAACCCTCGTAATGGGGAACATAACATCACGATCGATGTGGTGTCTTCCC
TTGAGCACCTAGTCACAACGCTGAGCCAAATGGGGCCACCTGGTCGCATC
TCGCTCAAAGGTTTGAATATTACCGAGCCATTAGACGCTGATAGACATTT
TCGTCCGCTAGAATTTTATCTGAGTCGTGGGGACCCCTGGGACAACGAAG
GAATCTCAATGCCCAACTTGCTGCGGCAGCTTTACAGCCTCGATCAAGTC
ACCCAGCAATGGGAGAGTGACAAAGAACCCAACTATTACACCGCCGTCAT
CTACACGCGACCCGACTTGCTGTTTCATACTCGGCTGCCCTTGGTGGCCT
CAGAAAATGGCGCGCGACACATCCTGTCACCCAACTCCATTTATGCCGCG
CCCTTTGACGACGAGCTTGGGCAGGCGTTGAACGATCGCTTTGCCTTTGG
AGCGCCGAATGTCATGCGGATTTATGGCCATCGCATGCGTTACATTGAGC
CCTATTTTGACCGATACCCAGAGGCCTCCTTGTGGTCCGAGAAATTTCTA
CACAAAGTCATGATTCAAATGTATGGCTTCGCCTACACCCGTTTGGAAAA
CTTTTTCTTTTCCCGAGTCCGTGCCGATGGTACTTATCGAAACACGCGGT
AGAGCTGGGAATTCATAAAACACGATATGTTCTTCTGATTGTCACACGAA
TGACTCTAGTGAATCACATGGTCATCATATTCACAGTACAACAACTTATC
GGCTGATTTTTTTCTAAGATTGAACCCCGGACCTAGAGCGGGCAGTTGGT
GTAGCAGTGAAAATGTGTTGAAGTGGAATGTGGTGAAAGAGATTTAGGAA
AGTGATGAGATGTATGTTATTTTTATTGCGACTCCATTTATTTGAGTGTT
TACTTTCCCTTGCCGAAAGATAGATAGGCACAACAACGAGTAGAAGCCGC
TTGGTTCAGGAATTGGGGCGTCTTTGAGTGAACATTTTTACATCTGTGTT
GGTCCCAGCATTTTTATGGTCATGAGGCATTTTAATAATGTGATTTTTGG
TACATTGTGCTTTGATCTCTTCTCCGGATAGCGCACTTCTCTCATTTCTT
CCCT
back to top

protein sequence of NO09G04250.1

>NO09G04250.1-protein ID=NO09G04250.1-protein|Name=NO09G04250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MVLSETEYTSKERQQMRDLVQFLGSTPPAPPLRSSTILVPENNRNAMDPS
NESQDQPRLAMCFFGQVKNIADDHIRRFMEHVLHPLITYYPQIDVYLHTY
NIERFSNPRNGEHNITIDVVSSLEHLVTTLSQMGPPGRISLKGLNITEPL
DADRHFRPLEFYLSRGDPWDNEGISMPNLLRQLYSLDQVTQQWESDKEPN
YYTAVIYTRPDLLFHTRLPLVASENGARHILSPNSIYAAPFDDELGQALN
DRFAFGAPNVMRIYGHRMRYIEPYFDRYPEASLWSEKFLHKVMIQMYGFA
YTRLENFFFSRVRADGTYRNTR*
back to top

mRNA from alignment at chr9:1267136..1268988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04250.1 ID=NO09G04250.1|Name=NO09G04250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp|location=Sequence derived from alignment at chr9:1267136..1268988+ (Nannochloropsis oceanica)
AACGCGCTGCTTATCACAGTGCTTATCCTTTGCATTATTCGAGAGAATAT
TCATCTTCTTGGAGGAGGAAGGCCAACCGCGACTCAGGAGGCAATTCAGG
TAATGTCGAATACATGAGTGCGATACATTCTTGTCGATACCGATACCCCA
ACTAATCGAGCACAACGACTCGGGATAAGCATTGGTAATTGTTTTTCATC
TTCTGGTTCCACACAGCAACAGTCAAGCACAAAGATCCCATTAATACCAG
GACAGACTGTAAAGGTAGGAGGCCTCACTGCCGAAGACGTTAACGGTAAC
ATGGTGCTGTCAGAAACAGAATATACCTCCAAAGAGAGGCAGCAAATGAG
AGACTTAGTACAGTTTCTTGGCTCCACTCCTCCAGGTAGTGTATATATCC
GCAGAAGGGTTGCTTCTTGTCTTTGTCTGGCCATCTTTCTTGTTCTACTC
TTTTGGGACGCCTATTTTATTTCACCTCGACTCATCCGGGTGCGTCCCCA
TATAACGCATTTCACAGCCCCCCCGCTTCGGTCAAGTACGATTCTTGTTC
CGGAGAATAATCGTAATGCGATGGACCCGTCAAATGAGTCACAAGATCAG
CCACGCCTCGCCATGTGCTTCTTTGGGCAGGTCAAGAATATTGCAGACGA
CCACATCCGAAGGTTTATGGAGCACGTTTTACATCCTTTGATAACGTACT
ACCCGCAAATTGACGTGTATTTACACACATACAATATTGAGCGCTTCTCT
AACCCTCGTAATGGGGAACATAACATCACGATCGATGTGGTGTCTTCCCT
TGAGCACCTAGTCACAACGCTGAGCCAAATGGGGCCACCTGGTCGCATCT
CGCTCAAAGGTTTGAATATTACCGAGCCATTAGACGCTGATAGACATTTT
CGTCCGCTAGAATTTTATCTGAGTCGTGGGGACCCCTGGGACAACGAAGG
AATCTCAATGCCCAACTTGCTGCGGCAGCTTTACAGCCTCGATCAAGTCA
CCCAGCAATGGGAGAGTGACAAAGAACCCAACTATTACACCGCCGTCATC
TACACGCGACCCGACTTGCTGTTTCATACTCGGCTGCCCTTGGTGGCCTC
AGAAAATGGCGCGCGACACATCCTGTCACCCAACTCCATTTATGCCGCGC
CCTTTGACGACGAGCTTGGGCAGGCGTTGAACGATCGCTTTGCCTTTGGA
GCGCCGAATGTCATGCGGATTTATGGCCATCGCATGCGTTACATTGAGCC
CTATTTTGACCGATACCCAGAGGCCTCCTTGTGGTCCGAGAAATTTCTAC
ACAAAGTCATGATTCAAATGTATGGCTTCGCCTACACCCGTTTGGAAAAC
TTTTTCTTTTCCCGAGTCCGTGCCGATGGTACTTATCGAAACACGCGGTA
GAGCTGGGAATTCATAAAACACGATATGTTCTTCTGATTGTCACACGAAT
GACTCTAGTGAATCACATGGTCATCATATTCACAGTACAACAACTTATCG
GCTGATTTTTTTCTAAGATTGAACCCCGGACCTAGAGCGGGCAGTTGGTG
TAGCAGTGAAAATGTGTTGAAGTGGAATGTGGTGAAAGAGATTTAGGAAA
GTGATGAGATGTATGTTATTTTTATTGCGACTCCATTTATTTGAGTGTTT
ACTTTCCCTTGCCGAAAGATAGATAGGCACAACAACGAGTAGAAGCCGCT
TGGTTCAGGAATTGGGGCGTCTTTGAGTGAACATTTTTACATCTGTGTTG
GTCCCAGCATTTTTATGGTCATGAGGCATTTTAATAATGTGATTTTTGGT
ACATTGTGCTTTGATCTCTTCTCCGGATAGCGCACTTCTCTCATTTCTTC
CCT
back to top

Coding sequence (CDS) from alignment at chr9:1267136..1268988+

>NO09G04250.1 ID=NO09G04250.1|Name=NO09G04250.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr9:1267136..1268988+ (Nannochloropsis oceanica)
ATGGTGCTGTCAGAAACAGAATATACCTCCAAAGAGAGGCAGCAAATGAG
AGACTTAGTACAGTTTCTTGGCTCCACTCCTCCAGCCCCCCCGCTTCGGT
CAAGTACGATTCTTGTTCCGGAGAATAATCGTAATGCGATGGACCCGTCA
AATGAGTCACAAGATCAGCCACGCCTCGCCATGTGCTTCTTTGGGCAGGT
CAAGAATATTGCAGACGACCACATCCGAAGGTTTATGGAGCACGTTTTAC
ATCCTTTGATAACGTACTACCCGCAAATTGACGTGTATTTACACACATAC
AATATTGAGCGCTTCTCTAACCCTCGTAATGGGGAACATAACATCACGAT
CGATGTGGTGTCTTCCCTTGAGCACCTAGTCACAACGCTGAGCCAAATGG
GGCCACCTGGTCGCATCTCGCTCAAAGGTTTGAATATTACCGAGCCATTA
GACGCTGATAGACATTTTCGTCCGCTAGAATTTTATCTGAGTCGTGGGGA
CCCCTGGGACAACGAAGGAATCTCAATGCCCAACTTGCTGCGGCAGCTTT
ACAGCCTCGATCAAGTCACCCAGCAATGGGAGAGTGACAAAGAACCCAAC
TATTACACCGCCGTCATCTACACGCGACCCGACTTGCTGTTTCATACTCG
GCTGCCCTTGGTGGCCTCAGAAAATGGCGCGCGACACATCCTGTCACCCA
ACTCCATTTATGCCGCGCCCTTTGACGACGAGCTTGGGCAGGCGTTGAAC
GATCGCTTTGCCTTTGGAGCGCCGAATGTCATGCGGATTTATGGCCATCG
CATGCGTTACATTGAGCCCTATTTTGACCGATACCCAGAGGCCTCCTTGT
GGTCCGAGAAATTTCTACACAAAGTCATGATTCAAATGTATGGCTTCGCC
TACACCCGTTTGGAAAACTTTTTCTTTTCCCGAGTCCGTGCCGATGGTAC
TTATCGAAACACGCGGTAG
back to top
Synonyms
Publications