NO09G04140.1, NO09G04140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04140.1
Unique NameNO09G04140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length868
Alignment locationchr9:1241305..1242172 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1241305..1242172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G04140.1 vs.
Match: KIO25132.1 (hypothetical protein M407DRAFT_211121, partial [Tulasnella calospora MUT 4182])

HSP 1 Score: 76.6 bits (187), Expect = 8.300e-11
Identity = 50/142 (35.21%), Postives = 71/142 (50.00%), Query Frame = 0 
Query:    9 MLIVIFHTQQGAFTPYHLYHDFQPTIKALFIDVTKEVLQRGRVDINVFLLGSNELEKLFGILRSLFIGRGFHLKGLGELIGATIEVHSIKQRNPNWDRGQRRLSATG--SYDHTSLTSWEGKMYLEGSVGVVQSAQSARNNG 149
            +++ ++     AF P  LY+D Q  IK ++  V K+ L        + L G++ LE  FG +R+   G    L  L E   +   +  I  +NPNWDRG RRLS TG    DHT+  SW G +    +VG V S  +  NNG
Sbjct:  453 LMLALYRLNGTAFMPGQLYYDSQACIKNIYFCVAKQKLLDPTEKFFIGLCGTDRLEGEFGQIRTARGGPNVDLLQLSERAASAAHMSEIYAKNPNWDRGHRRLSLTGKEGIDHTNPKSWNGNI----TVGAV-SLLTCWNNG 589
The following BLAST results are available for this feature:
BLAST of NO09G04140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KIO25132.18.300e-1135.21hypothetical protein M407DRAFT_211121, partial [Tu... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04140NO09G04140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04140.1NO09G04140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04140.1.cds1NO09G04140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04140.1 ID=NO09G04140.1|Name=NO09G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=868bp
CGAATGCTTGCAAAGCGGACGGGAAGATCCGAAGGGAGAGGGCGTGATTC
ACAATTGCCAAGGAATGTGTGGTGATATGTGTTGTGCCTATGACTGGGAA
GTGGGCTTCATGTCGCGTCATCCCCTTAGTAGCGGTGGGAACGTGCAAGA
GGGAGAATGTGGAAGAGAATACGAATTTGATTACAGCCCTCTTGCGTGCG
TGGAATATTATCCAGGAAGAGATGATGGGAAAGTGCAATAAGCGCCTTGG
CGACATGCACCGGCTGGCAACCGATAAAGACAGTAAGCGACTGAAGGCCG
TCATTTCACCCTGAAGCTTATCTTTGGCGGTGTGCACGGTAGCAAGATGG
CCTCCGCCGCTGCTAGCACCATGCTTATTGTCATCTTCCACACACAGCAA
GGCGCCTTCACCCCTTACCACCTCTACCACGACTTCCAACCCACCATCAA
GGCCCTCTTCATAGACGTGACCAAGGAAGTCCTACAACGGGGCCGTGTGG
ACATAAACGTCTTTCTCCTTGGGAGCAACGAGCTGGAGAAGTTGTTTGGC
ATCCTGCGTTCCCTCTTCATCGGCCGTGGTTTTCATTTAAAGGGGCTGGG
AGAGCTAATTGGTGCTACGATAGAAGTTCATAGCATCAAGCAAAGGAACC
CTAATTGGGACAGAGGACAAAGGCGCCTGTCTGCTACCGGAAGCTACGAC
CATACCAGCCTCACCAGCTGGGAGGGAAAGATGTACTTGGAGGGAAGTGT
AGGTGTGGTGCAGTCAGCGCAGTCAGCGCGGAATAATGGCATGGTGCTTG
GCTTGACGTCTTTTGGGGTGCATCCTTATTTTGGGGTCAAGTATCACGAA
GGTGTCACGCGTGTATGA
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protein sequence of NO09G04140.1

>NO09G04140.1-protein ID=NO09G04140.1-protein|Name=NO09G04140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MASAAASTMLIVIFHTQQGAFTPYHLYHDFQPTIKALFIDVTKEVLQRGR
VDINVFLLGSNELEKLFGILRSLFIGRGFHLKGLGELIGATIEVHSIKQR
NPNWDRGQRRLSATGSYDHTSLTSWEGKMYLEGSVGVVQSAQSARNNGMV
LGLTSFGVHPYFGVKYHEGVTRV*
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mRNA from alignment at chr9:1241305..1242172-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04140.1 ID=NO09G04140.1|Name=NO09G04140.1|organism=Nannochloropsis oceanica|type=mRNA|length=868bp|location=Sequence derived from alignment at chr9:1241305..1242172- (Nannochloropsis oceanica)
CGAATGCTTGCAAAGCGGACGGGAAGATCCGAAGGGAGAGGGCGTGATTC
ACAATTGCCAAGGAATGTGTGGTGATATGTGTTGTGCCTATGACTGGGAA
GTGGGCTTCATGTCGCGTCATCCCCTTAGTAGCGGTGGGAACGTGCAAGA
GGGAGAATGTGGAAGAGAATACGAATTTGATTACAGCCCTCTTGCGTGCG
TGGAATATTATCCAGGAAGAGATGATGGGAAAGTGCAATAAGCGCCTTGG
CGACATGCACCGGCTGGCAACCGATAAAGACAGTAAGCGACTGAAGGCCG
TCATTTCACCCTGAAGCTTATCTTTGGCGGTGTGCACGGTAGCAAGATGG
CCTCCGCCGCTGCTAGCACCATGCTTATTGTCATCTTCCACACACAGCAA
GGCGCCTTCACCCCTTACCACCTCTACCACGACTTCCAACCCACCATCAA
GGCCCTCTTCATAGACGTGACCAAGGAAGTCCTACAACGGGGCCGTGTGG
ACATAAACGTCTTTCTCCTTGGGAGCAACGAGCTGGAGAAGTTGTTTGGC
ATCCTGCGTTCCCTCTTCATCGGCCGTGGTTTTCATTTAAAGGGGCTGGG
AGAGCTAATTGGTGCTACGATAGAAGTTCATAGCATCAAGCAAAGGAACC
CTAATTGGGACAGAGGACAAAGGCGCCTGTCTGCTACCGGAAGCTACGAC
CATACCAGCCTCACCAGCTGGGAGGGAAAGATGTACTTGGAGGGAAGTGT
AGGTGTGGTGCAGTCAGCGCAGTCAGCGCGGAATAATGGCATGGTGCTTG
GCTTGACGTCTTTTGGGGTGCATCCTTATTTTGGGGTCAAGTATCACGAA
GGTGTCACGCGTGTATGA
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Coding sequence (CDS) from alignment at chr9:1241305..1242172-

>NO09G04140.1 ID=NO09G04140.1|Name=NO09G04140.1|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at chr9:1241305..1242172- (Nannochloropsis oceanica)
ATGGCCTCCGCCGCTGCTAGCACCATGCTTATTGTCATCTTCCACACACA
GCAAGGCGCCTTCACCCCTTACCACCTCTACCACGACTTCCAACCCACCA
TCAAGGCCCTCTTCATAGACGTGACCAAGGAAGTCCTACAACGGGGCCGT
GTGGACATAAACGTCTTTCTCCTTGGGAGCAACGAGCTGGAGAAGTTGTT
TGGCATCCTGCGTTCCCTCTTCATCGGCCGTGGTTTTCATTTAAAGGGGC
TGGGAGAGCTAATTGGTGCTACGATAGAAGTTCATAGCATCAAGCAAAGG
AACCCTAATTGGGACAGAGGACAAAGGCGCCTGTCTGCTACCGGAAGCTA
CGACCATACCAGCCTCACCAGCTGGGAGGGAAAGATGTACTTGGAGGGAA
GTGTAGGTGTGGTGCAGTCAGCGCAGTCAGCGCGGAATAATGGCATGGTG
CTTGGCTTGACGTCTTTTGGGGTGCATCCTTATTTTGGGGTCAAGTATCA
CGAAGGTGTCACGCGTGTATGA
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Synonyms
Publications