NO09G04090.1, NO09G04090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04090.1
Unique NameNO09G04090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length546
Alignment locationchr9:1209408..1209953 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1209408..1209953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G04090.1 vs.
Match: OXA61706.1 (Failed axon connections [Folsomia candida])

HSP 1 Score: 157.9 bits (398), Expect = 2.900e-35
Identity = 86/166 (51.81%), Postives = 110/166 (66.27%), Query Frame = 0 
Query:    1 MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAKVLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQGQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHG---QPPPALATPNVVYKQVFM 164
            +NPSG   H+L+LKVG  II+LRN+N  +GL NGTRL+++ L   +I AKVLTGS  G +V +PRI++ TN D   +PF  +RRQ+PV+ AFAMT NKSQGQT  KV  YLP P F+ GQLYVA SRV    ++ + V      G   Q    + TPNVVYK + M
Sbjct: 1062 LNPSGMPPHELKLKVGALIILLRNLNTKRGLCNGTRLVVVELKTNLILAKVLTGSSEGNIVFIPRIDLTTNSD---LPFTLKRRQFPVKRAFAMTINKSQGQTLDKVGIYLPNPVFSHGQLYVAFSRVRRSCDVKVYVVDTIEQGKLIQGSNVVFTPNVVYKAILM 1224
The following BLAST results are available for this feature:
BLAST of NO09G04090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OXA61706.12.900e-3551.81Failed axon connections [Folsomia candida][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04090NO09G04090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04090.1NO09G04090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04090.1.cds1NO09G04090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04090.1 ID=NO09G04090.1|Name=NO09G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=546bp
ATGAACCCGTCCGGCTTCTCCCTGCATCAACTACGGCTGAAAGTGGGCAT
ACCTATCATTGTGTTGCGGAACGTAAACCCGGCACAAGGCCTCGCCAATG
GGACACGTTTGCTCATCCTTTATCTGTCTCTTCGCGTCATCCAGGCCAAA
GTTCTGACGGGGAGCCAAGTGGGTCAAGTTGTCTGCCTTCCTAGGATCAA
CATGGACACCAACGACGACACCAAGGGCGTACCGTTCATCCGCCGCCGAC
GTCAGTACCCGGTCCGGCCTGCCTTCGCCATGACCAAAAACAAATCTCAG
GGGCAGACCTTCCAAAAAGTCGCATTCTACTTGCCGCCCCCATCATTTGC
TCGCGGTCAGCTGTATGTCGCGCTTTCGAGAGTAGGAGACTTCACCAACA
TCACCATGATGGTCACTCACCCTCCTCTACACGGCCAGCCCCCTCCTGCA
CTTGCCACACCCAATGTAGTCTACAAGCAAGTGTTCATGTACATGAAACC
ACCACAGTCACCACCACAGCGACCGGAAGACATGATGGAAGTATAG
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protein sequence of NO09G04090.1

>NO09G04090.1-protein ID=NO09G04090.1-protein|Name=NO09G04090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MNPSGFSLHQLRLKVGIPIIVLRNVNPAQGLANGTRLLILYLSLRVIQAK
VLTGSQVGQVVCLPRINMDTNDDTKGVPFIRRRRQYPVRPAFAMTKNKSQ
GQTFQKVAFYLPPPSFARGQLYVALSRVGDFTNITMMVTHPPLHGQPPPA
LATPNVVYKQVFMYMKPPQSPPQRPEDMMEV*
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mRNA from alignment at chr9:1209408..1209953+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04090.1 ID=NO09G04090.1|Name=NO09G04090.1|organism=Nannochloropsis oceanica|type=mRNA|length=546bp|location=Sequence derived from alignment at chr9:1209408..1209953+ (Nannochloropsis oceanica)
ATGAACCCGTCCGGCTTCTCCCTGCATCAACTACGGCTGAAAGTGGGCAT
ACCTATCATTGTGTTGCGGAACGTAAACCCGGCACAAGGCCTCGCCAATG
GGACACGTTTGCTCATCCTTTATCTGTCTCTTCGCGTCATCCAGGCCAAA
GTTCTGACGGGGAGCCAAGTGGGTCAAGTTGTCTGCCTTCCTAGGATCAA
CATGGACACCAACGACGACACCAAGGGCGTACCGTTCATCCGCCGCCGAC
GTCAGTACCCGGTCCGGCCTGCCTTCGCCATGACCAAAAACAAATCTCAG
GGGCAGACCTTCCAAAAAGTCGCATTCTACTTGCCGCCCCCATCATTTGC
TCGCGGTCAGCTGTATGTCGCGCTTTCGAGAGTAGGAGACTTCACCAACA
TCACCATGATGGTCACTCACCCTCCTCTACACGGCCAGCCCCCTCCTGCA
CTTGCCACACCCAATGTAGTCTACAAGCAAGTGTTCATGTACATGAAACC
ACCACAGTCACCACCACAGCGACCGGAAGACATGATGGAAGTATAG
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Coding sequence (CDS) from alignment at chr9:1209408..1209953+

>NO09G04090.1 ID=NO09G04090.1|Name=NO09G04090.1|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at chr9:1209408..1209953+ (Nannochloropsis oceanica)
ATGAACCCGTCCGGCTTCTCCCTGCATCAACTACGGCTGAAAGTGGGCAT
ACCTATCATTGTGTTGCGGAACGTAAACCCGGCACAAGGCCTCGCCAATG
GGACACGTTTGCTCATCCTTTATCTGTCTCTTCGCGTCATCCAGGCCAAA
GTTCTGACGGGGAGCCAAGTGGGTCAAGTTGTCTGCCTTCCTAGGATCAA
CATGGACACCAACGACGACACCAAGGGCGTACCGTTCATCCGCCGCCGAC
GTCAGTACCCGGTCCGGCCTGCCTTCGCCATGACCAAAAACAAATCTCAG
GGGCAGACCTTCCAAAAAGTCGCATTCTACTTGCCGCCCCCATCATTTGC
TCGCGGTCAGCTGTATGTCGCGCTTTCGAGAGTAGGAGACTTCACCAACA
TCACCATGATGGTCACTCACCCTCCTCTACACGGCCAGCCCCCTCCTGCA
CTTGCCACACCCAATGTAGTCTACAAGCAAGTGTTCATGTACATGAAACC
ACCACAGTCACCACCACAGCGACCGGAAGACATGATGGAAGTATAG
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Synonyms
Publications