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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:1186498..1189140 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G04040.1 vs.
Match: EWM20387.1 (nitric oxide synthase-interacting protein [Nannochloropsis gaditana]) HSP 1 Score: 399.4 bits (1025), Expect = 9.600e-108 Identity = 211/352 (59.94%), Postives = 250/352 (71.02%), Query Frame = 0
Query: 1 MPQKHSRNNTDRAAFTYQEKQMVGWGTQKTRIGTDSQQPFGYCCLTLKPVVDPVVSPSGHVYSREAIVEYLLAKTQELKRQKLVYKQQEHNKRDEAEAALEDE--------------------------REKEAQHFVEKQMAAASTVAVAGQGQGPSAEQERREKYIA---------QQLSKAIHMDLKTKREEVKKTSFWVPVCTPEAKDMGIDKPDRRPRSPTTGDPLRAKDLLPLPLMSDPDWKDEHDGRGKFICAVSRKPITSQPTVLIK------------------STGVVLLESIAKELAYPSMTCPVTGKIFKESDLLHLKGGGTGFSASGEVEAKKHRVTHF 300
MPQKHSRNNTDRA FTYQE++M GWGTQKTRIGTDSQQPFGYCCLTL+PV DPVVSPSGH+YSREAIVEYLL+KTQ+LKRQ+++Y+QQ +++ EAAL +E + + ++ + +++ Q Q + + + QQLSK IH DLKTK+E+VKKTSFWVPVCTPEAK+ I+KP RPRSP TGDPLRAKDLLPLPLM DP+W++EHDGRGKF+CAVSRK ITSQP V IK +TGVV+LESIA+ELAYPSMTCPVTGK F++SDLLHL+GGGTGFSASGEV AKKHRVTHF
Sbjct: 41 MPQKHSRNNTDRATFTYQERKMAGWGTQKTRIGTDSQQPFGYCCLTLRPVTDPVVSPSGHIYSREAIVEYLLSKTQDLKRQRVLYEQQRGEEQERMEAALNEEKEKDVHRFVERQTSTFEGQGSSMSKTLRRRIARDISSRIVRGTFLSLIVQNQSETRLTDSCARSPCGWSPTHTGVQQLSKVIHRDLKTKQEDVKKTSFWVPVCTPEAKNTAIEKPATRPRSPMTGDPLRAKDLLPLPLMVDPEWRNEHDGRGKFLCAVSRKAITSQPAVFIKRYESGMGKKMTIKKVKNENTGVVVLESIAQELAYPSMTCPVTGKAFRKSDLLHLRGGGTGFSASGEVLAKKHRVTHF 392
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G04040.1 ID=NO09G04040.1|Name=NO09G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=900bp ATGCCGCAAAAACACTCGCGCAACAACACGGATAGGGCCGCCTTCACGTA CCAGGAAAAGCAAATGGTGGGGTGGGGCACTCAAAAGACACGCATTGGCA CGGACTCTCAGCAGCCCTTCGGCTACTGCTGCCTCACCCTCAAGCCCGTA GTGGATCCTGTCGTCAGCCCATCAGGCCACGTCTACTCGCGGGAGGCCAT TGTGGAATATCTTTTGGCCAAGACGCAGGAGCTCAAGCGACAGAAGCTGG TCTACAAGCAACAAGAGCACAACAAGCGTGACGAGGCGGAAGCTGCACTG GAAGACGAGAGGGAGAAGGAGGCCCAGCATTTCGTCGAGAAGCAGATGGC GGCCGCTTCGACAGTGGCCGTGGCGGGGCAAGGTCAAGGCCCCTCCGCCG AGCAGGAGAGGCGGGAGAAGTACATCGCCCAGCAACTCTCCAAGGCCATC CACATGGACCTGAAGACGAAACGCGAGGAGGTCAAAAAGACCTCCTTCTG GGTGCCTGTCTGCACGCCCGAGGCCAAGGATATGGGCATCGACAAGCCCG ACAGGCGGCCTCGCAGCCCCACGACGGGAGACCCCCTTCGCGCCAAGGAT TTGCTGCCCTTGCCCCTCATGTCAGACCCGGACTGGAAGGACGAGCACGA CGGCCGGGGCAAATTCATCTGCGCAGTCTCTCGCAAGCCCATCACATCCC AGCCCACGGTTCTCATTAAGAGCACGGGCGTCGTGCTCTTGGAGAGCATT GCCAAGGAGTTGGCCTACCCATCTATGACGTGTCCCGTCACGGGCAAGAT ATTCAAGGAAAGCGACCTCCTGCACCTGAAAGGCGGGGGGACGGGCTTCT CGGCCTCGGGCGAGGTAGAGGCCAAGAAGCACAGAGTTACCCACTTCTAA back to topprotein sequence of NO09G04040.1 >NO09G04040.1-protein ID=NO09G04040.1-protein|Name=NO09G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp MPQKHSRNNTDRAAFTYQEKQMVGWGTQKTRIGTDSQQPFGYCCLTLKPV VDPVVSPSGHVYSREAIVEYLLAKTQELKRQKLVYKQQEHNKRDEAEAAL EDEREKEAQHFVEKQMAAASTVAVAGQGQGPSAEQERREKYIAQQLSKAI HMDLKTKREEVKKTSFWVPVCTPEAKDMGIDKPDRRPRSPTTGDPLRAKD LLPLPLMSDPDWKDEHDGRGKFICAVSRKPITSQPTVLIKSTGVVLLESI AKELAYPSMTCPVTGKIFKESDLLHLKGGGTGFSASGEVEAKKHRVTHF* back to topmRNA from alignment at chr9:1186498..1189140- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G04040.1 ID=NO09G04040.1|Name=NO09G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2643bp|location=Sequence derived from alignment at chr9:1186498..1189140- (Nannochloropsis oceanica) ATGCCGCAAAAACACTCGCGCAACAACACGGATAGGGCCGCCTTCACGTA
CCAGGAAAAGCAAATGGTGGGGTGAGTAGGGAGTGGTGCGGGGGAGACAG
GGAAGATGAGAGAGGGAAGGGAGGGAAAGGCCATTTTGATGCTGTATATG
TGATGCCTTCCCGCTTCACACATGAATGGGGGCCAAGGTAGGCATACAAG
AAGAGCCCCATATTCGTATATTTACCTTGTAAGTAGGGTTTTGGGGGCAG
AAAGAATGAGGGACCGGGCAGAGTAAGGGAAGGGAGAATGTCTCGGCTCC
CGCAGTCCGCTTGATGCGCTCTTTTTGTGGGAGGGAGTCTGAGACACGAG
CACATGCTCTCCTACTGCACTCATGTCACTGGCATTCTCCCTTACACTAT
ACCTCTCTTCTCCATGTAGGTGGGGCACTCAAAAGACACGCATTGGCACG
GACTCTCAGCAGCCCTTCGGCTACTGCTGCCTCACCCTCAAGCCCGTAGT
GGATCCTGTCGTCAGGTACGAGACGAAAGCAGACTTGAAAAGAATGCTAG
GAGGAACCCTGGTTGGCAGTGTAGAGATCGTCATTGTCCCTGCTGATTCA
GGCTGGTGCGTCTGTGGCTTACATCAACCCTCCCTCCCCCCCTCCTCCCT
TCATTCTTTGCCAGCCCATCAGGCCACGTCTACTCGCGGGAGGCCATTGT
GGAATATCTTTTGGCCAAGACGCAGGAGCTCAAGCGACAGAAGCTGGTCT
ACAAGGTGGTCATTATTTGAGTTGGTGTGCTTTCCCTCTCCTGCCTTTCC
CCTTGCTCTCCTATGTCAGTCCTGCTCCTGCTCACCACATCCCTTGGCAC
CTCCTTTCTCGCCATACTCACGCACACACACGCGCAATACTGCAGCAACA
AGAGCACAACAAGCGTGACGAGGCGGAAGCTGCACTGGAAGACGAGAGGG
AGAAGGAGGCCCAGCATTTCGTCGAGAAGCAGATGGCGGCCGCTTCGACA
GTGGCCGTGGCGGGGCAAGGTATGGCAGGGCTAGCAGGGGGAAGGGCGGG
AAGGATAAAGGCTGGAACGCTGTCAATGTGTTGTAGGTATTCACCCCTAC
CCTACTGTCCATCCTCAGGTCAAGGCCCCTCCGCCGAGCAGGAGAGGCGG
GAGAAGTACATCGCCCAGGTGCGTACGTGCCTTGCCTTCTGTACTCATGT
GCACTCATCGCGCCTCCCTCCCTCCCTCCTCCAACTAGCTATTTAGTTTT
CCCCGGAACTCACCTCATATATTTCCGCAGCAACTCTCCAAGGCCATCCA
CATGGACCTGAAGACGAAACGCGAGGAGGTCAAAAAGACCTCCTTCTGGG
TGCCTGTCTGCACGCCCGAGGCCAAGGATATGGGCATCGACAAGGTAGGA
AGGGAAGAGGTGGGCTTCAGATACAATGGAAGGGAAGAGGTGGGCTTCAG
ATACAATGGATGGAGGAAAGGAACGAGTGCGGCTATGCGAAGGTATGATG
AGAGGGGGAGGATGAGGGCATGGGTTGGTGAGAGGGAATGCTGAAGGGCG
GCTTATCCTCGCCGGGCGTTTGCTGACACCTAGCAATCGGCGTACTTGTA
TAGCTCTGTGAAAGACGACGAAGGTTTTTGATTGATCCTCCACCACTCAG
GGCCGCGCTGCCACTCTCCTTCTTTTCATTGATTCTCTCTAGCCCGACAG
GCGGCCTCGCAGCCCCACGACGGGAGACCCCCTTCGCGCCAAGGATTTGC
TGCCCTTGCCCCTCATGTCAGACCCGGACTGGAAGGTAGTGGGTGAGGAG
AAGGAGGGGGGAGACGTTGCAGTTGAGAACAGGCGGCGGCGGTCTGCCTG
GGTAGAGGTCGCTGAGGAACGGACGAAGTGCTCATCTTCCTTTGCTTCCT
CCCTCTCCGCCATCCCTATCTTCCTTCCCTCATACCCCGCCTCTTCTTCC
CTCTTTCTCGACAGGACGAGCACGACGGCCGGGGCAAATTCATCTGCGCA
GTCTCTCGCAAGCCCATCACATCCCAGCCCACGGTTCTCATTAAGAGGTG
GGTGGGAATGAAGGGGAAGAGGAAGGGGGGAGGGAGGGGCTTGTGTGTTG
CAGGCACAGGCGAGAGGGAAAGAGATGAAGGGTCAGAGCTTCGGCCACAT
TCAAAATCTGCAGCGTGCCGCGCACATCAGCTGACTTGGTCATATCTATT
CACTCTCTGTCCGCTTTTCTCATCCCTCCCTTCCTTCCCCCGACCCTGCA
TAGCACGGGCGTCGTGCTCTTGGAGAGCATTGCCAAGGAGTTGGCCTACC
CATCTATGACGTGTCCCGTCACGGGCAAGATATTCAAGGTGAGACCCGAG
TGAAAGGAGGGAGAACGGCTAGCGGGCAGGGAGGAGGAGTGAGGCTGGCA
AGACTTGATTTTGGAAATGTAAAAAAGAAGGGAATTTCCGCGGTACAGCT
ACGACCGTATGTGCATGAGTATCTCCTCCGCTCTTCATGAATTCGATCCT
CTTTCGCTCATGGTATCTACCCGTCTCTCCACCGTGTCTATCTTACATAG
GAAAGCGACCTCCTGCACCTGAAAGGCGGGGGGACGGGCTTCTCGGCCTC
GGGCGAGGTAGAGGCCAAGAAGCACAGAGTTACCCACTTCTAA back to topCoding sequence (CDS) from alignment at chr9:1186498..1189140- >NO09G04040.1 ID=NO09G04040.1|Name=NO09G04040.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr9:1186498..1189140- (Nannochloropsis oceanica) ATGCCGCAAAAACACTCGCGCAACAACACGGATAGGGCCGCCTTCACGTA CCAGGAAAAGCAAATGGTGGGGTGGGGCACTCAAAAGACACGCATTGGCA CGGACTCTCAGCAGCCCTTCGGCTACTGCTGCCTCACCCTCAAGCCCGTA GTGGATCCTGTCGTCAGCCCATCAGGCCACGTCTACTCGCGGGAGGCCAT TGTGGAATATCTTTTGGCCAAGACGCAGGAGCTCAAGCGACAGAAGCTGG TCTACAAGCAACAAGAGCACAACAAGCGTGACGAGGCGGAAGCTGCACTG GAAGACGAGAGGGAGAAGGAGGCCCAGCATTTCGTCGAGAAGCAGATGGC GGCCGCTTCGACAGTGGCCGTGGCGGGGCAAGGTCAAGGCCCCTCCGCCG AGCAGGAGAGGCGGGAGAAGTACATCGCCCAGCAACTCTCCAAGGCCATC CACATGGACCTGAAGACGAAACGCGAGGAGGTCAAAAAGACCTCCTTCTG GGTGCCTGTCTGCACGCCCGAGGCCAAGGATATGGGCATCGACAAGCCCG ACAGGCGGCCTCGCAGCCCCACGACGGGAGACCCCCTTCGCGCCAAGGAT TTGCTGCCCTTGCCCCTCATGTCAGACCCGGACTGGAAGGACGAGCACGA CGGCCGGGGCAAATTCATCTGCGCAGTCTCTCGCAAGCCCATCACATCCC AGCCCACGGTTCTCATTAAGAGCACGGGCGTCGTGCTCTTGGAGAGCATT GCCAAGGAGTTGGCCTACCCATCTATGACGTGTCCCGTCACGGGCAAGAT ATTCAAGGAAAGCGACCTCCTGCACCTGAAAGGCGGGGGGACGGGCTTCT CGGCCTCGGGCGAGGTAGAGGCCAAGAAGCACAGAGTTACCCACTTCTAA back to top
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