NO09G04040.1, NO09G04040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04040.1
Unique NameNO09G04040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length900
Alignment locationchr9:1186498..1189140 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1186498..1189140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G04040.1 vs.
Match: EWM20387.1 (nitric oxide synthase-interacting protein [Nannochloropsis gaditana])

HSP 1 Score: 399.4 bits (1025), Expect = 9.600e-108
Identity = 211/352 (59.94%), Postives = 250/352 (71.02%), Query Frame = 0
Query:    1 MPQKHSRNNTDRAAFTYQEKQMVGWGTQKTRIGTDSQQPFGYCCLTLKPVVDPVVSPSGHVYSREAIVEYLLAKTQELKRQKLVYKQQEHNKRDEAEAALEDE--------------------------REKEAQHFVEKQMAAASTVAVAGQGQGPSAEQERREKYIA---------QQLSKAIHMDLKTKREEVKKTSFWVPVCTPEAKDMGIDKPDRRPRSPTTGDPLRAKDLLPLPLMSDPDWKDEHDGRGKFICAVSRKPITSQPTVLIK------------------STGVVLLESIAKELAYPSMTCPVTGKIFKESDLLHLKGGGTGFSASGEVEAKKHRVTHF 300
            MPQKHSRNNTDRA FTYQE++M GWGTQKTRIGTDSQQPFGYCCLTL+PV DPVVSPSGH+YSREAIVEYLL+KTQ+LKRQ+++Y+QQ   +++  EAAL +E                            +     +  ++   + +++  Q Q  +   +   +            QQLSK IH DLKTK+E+VKKTSFWVPVCTPEAK+  I+KP  RPRSP TGDPLRAKDLLPLPLM DP+W++EHDGRGKF+CAVSRK ITSQP V IK                  +TGVV+LESIA+ELAYPSMTCPVTGK F++SDLLHL+GGGTGFSASGEV AKKHRVTHF
Sbjct:   41 MPQKHSRNNTDRATFTYQERKMAGWGTQKTRIGTDSQQPFGYCCLTLRPVTDPVVSPSGHIYSREAIVEYLLSKTQDLKRQRVLYEQQRGEEQERMEAALNEEKEKDVHRFVERQTSTFEGQGSSMSKTLRRRIARDISSRIVRGTFLSLIVQNQSETRLTDSCARSPCGWSPTHTGVQQLSKVIHRDLKTKQEDVKKTSFWVPVCTPEAKNTAIEKPATRPRSPMTGDPLRAKDLLPLPLMVDPEWRNEHDGRGKFLCAVSRKAITSQPAVFIKRYESGMGKKMTIKKVKNENTGVVVLESIAQELAYPSMTCPVTGKAFRKSDLLHLRGGGTGFSASGEVLAKKHRVTHF 392          
The following BLAST results are available for this feature:
BLAST of NO09G04040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20387.19.600e-10859.94nitric oxide synthase-interacting protein [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04040NO09G04040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04040.1NO09G04040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04040.1.cds1NO09G04040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04040.1.cds2NO09G04040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04040.1.cds3NO09G04040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04040.1.cds4NO09G04040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04040.1.cds5NO09G04040.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04040.1.cds6NO09G04040.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04040.1.cds7NO09G04040.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04040.1.cds8NO09G04040.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04040.1.cds9NO09G04040.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04040.1.cds10NO09G04040.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04040.1 ID=NO09G04040.1|Name=NO09G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=900bp
ATGCCGCAAAAACACTCGCGCAACAACACGGATAGGGCCGCCTTCACGTA
CCAGGAAAAGCAAATGGTGGGGTGGGGCACTCAAAAGACACGCATTGGCA
CGGACTCTCAGCAGCCCTTCGGCTACTGCTGCCTCACCCTCAAGCCCGTA
GTGGATCCTGTCGTCAGCCCATCAGGCCACGTCTACTCGCGGGAGGCCAT
TGTGGAATATCTTTTGGCCAAGACGCAGGAGCTCAAGCGACAGAAGCTGG
TCTACAAGCAACAAGAGCACAACAAGCGTGACGAGGCGGAAGCTGCACTG
GAAGACGAGAGGGAGAAGGAGGCCCAGCATTTCGTCGAGAAGCAGATGGC
GGCCGCTTCGACAGTGGCCGTGGCGGGGCAAGGTCAAGGCCCCTCCGCCG
AGCAGGAGAGGCGGGAGAAGTACATCGCCCAGCAACTCTCCAAGGCCATC
CACATGGACCTGAAGACGAAACGCGAGGAGGTCAAAAAGACCTCCTTCTG
GGTGCCTGTCTGCACGCCCGAGGCCAAGGATATGGGCATCGACAAGCCCG
ACAGGCGGCCTCGCAGCCCCACGACGGGAGACCCCCTTCGCGCCAAGGAT
TTGCTGCCCTTGCCCCTCATGTCAGACCCGGACTGGAAGGACGAGCACGA
CGGCCGGGGCAAATTCATCTGCGCAGTCTCTCGCAAGCCCATCACATCCC
AGCCCACGGTTCTCATTAAGAGCACGGGCGTCGTGCTCTTGGAGAGCATT
GCCAAGGAGTTGGCCTACCCATCTATGACGTGTCCCGTCACGGGCAAGAT
ATTCAAGGAAAGCGACCTCCTGCACCTGAAAGGCGGGGGGACGGGCTTCT
CGGCCTCGGGCGAGGTAGAGGCCAAGAAGCACAGAGTTACCCACTTCTAA
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protein sequence of NO09G04040.1

>NO09G04040.1-protein ID=NO09G04040.1-protein|Name=NO09G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MPQKHSRNNTDRAAFTYQEKQMVGWGTQKTRIGTDSQQPFGYCCLTLKPV
VDPVVSPSGHVYSREAIVEYLLAKTQELKRQKLVYKQQEHNKRDEAEAAL
EDEREKEAQHFVEKQMAAASTVAVAGQGQGPSAEQERREKYIAQQLSKAI
HMDLKTKREEVKKTSFWVPVCTPEAKDMGIDKPDRRPRSPTTGDPLRAKD
LLPLPLMSDPDWKDEHDGRGKFICAVSRKPITSQPTVLIKSTGVVLLESI
AKELAYPSMTCPVTGKIFKESDLLHLKGGGTGFSASGEVEAKKHRVTHF*
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mRNA from alignment at chr9:1186498..1189140-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04040.1 ID=NO09G04040.1|Name=NO09G04040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2643bp|location=Sequence derived from alignment at chr9:1186498..1189140- (Nannochloropsis oceanica)
ATGCCGCAAAAACACTCGCGCAACAACACGGATAGGGCCGCCTTCACGTA CCAGGAAAAGCAAATGGTGGGGTGAGTAGGGAGTGGTGCGGGGGAGACAG GGAAGATGAGAGAGGGAAGGGAGGGAAAGGCCATTTTGATGCTGTATATG TGATGCCTTCCCGCTTCACACATGAATGGGGGCCAAGGTAGGCATACAAG AAGAGCCCCATATTCGTATATTTACCTTGTAAGTAGGGTTTTGGGGGCAG AAAGAATGAGGGACCGGGCAGAGTAAGGGAAGGGAGAATGTCTCGGCTCC CGCAGTCCGCTTGATGCGCTCTTTTTGTGGGAGGGAGTCTGAGACACGAG CACATGCTCTCCTACTGCACTCATGTCACTGGCATTCTCCCTTACACTAT ACCTCTCTTCTCCATGTAGGTGGGGCACTCAAAAGACACGCATTGGCACG GACTCTCAGCAGCCCTTCGGCTACTGCTGCCTCACCCTCAAGCCCGTAGT GGATCCTGTCGTCAGGTACGAGACGAAAGCAGACTTGAAAAGAATGCTAG GAGGAACCCTGGTTGGCAGTGTAGAGATCGTCATTGTCCCTGCTGATTCA GGCTGGTGCGTCTGTGGCTTACATCAACCCTCCCTCCCCCCCTCCTCCCT TCATTCTTTGCCAGCCCATCAGGCCACGTCTACTCGCGGGAGGCCATTGT GGAATATCTTTTGGCCAAGACGCAGGAGCTCAAGCGACAGAAGCTGGTCT ACAAGGTGGTCATTATTTGAGTTGGTGTGCTTTCCCTCTCCTGCCTTTCC CCTTGCTCTCCTATGTCAGTCCTGCTCCTGCTCACCACATCCCTTGGCAC CTCCTTTCTCGCCATACTCACGCACACACACGCGCAATACTGCAGCAACA AGAGCACAACAAGCGTGACGAGGCGGAAGCTGCACTGGAAGACGAGAGGG AGAAGGAGGCCCAGCATTTCGTCGAGAAGCAGATGGCGGCCGCTTCGACA GTGGCCGTGGCGGGGCAAGGTATGGCAGGGCTAGCAGGGGGAAGGGCGGG AAGGATAAAGGCTGGAACGCTGTCAATGTGTTGTAGGTATTCACCCCTAC CCTACTGTCCATCCTCAGGTCAAGGCCCCTCCGCCGAGCAGGAGAGGCGG GAGAAGTACATCGCCCAGGTGCGTACGTGCCTTGCCTTCTGTACTCATGT GCACTCATCGCGCCTCCCTCCCTCCCTCCTCCAACTAGCTATTTAGTTTT CCCCGGAACTCACCTCATATATTTCCGCAGCAACTCTCCAAGGCCATCCA CATGGACCTGAAGACGAAACGCGAGGAGGTCAAAAAGACCTCCTTCTGGG TGCCTGTCTGCACGCCCGAGGCCAAGGATATGGGCATCGACAAGGTAGGA AGGGAAGAGGTGGGCTTCAGATACAATGGAAGGGAAGAGGTGGGCTTCAG ATACAATGGATGGAGGAAAGGAACGAGTGCGGCTATGCGAAGGTATGATG AGAGGGGGAGGATGAGGGCATGGGTTGGTGAGAGGGAATGCTGAAGGGCG GCTTATCCTCGCCGGGCGTTTGCTGACACCTAGCAATCGGCGTACTTGTA TAGCTCTGTGAAAGACGACGAAGGTTTTTGATTGATCCTCCACCACTCAG GGCCGCGCTGCCACTCTCCTTCTTTTCATTGATTCTCTCTAGCCCGACAG GCGGCCTCGCAGCCCCACGACGGGAGACCCCCTTCGCGCCAAGGATTTGC TGCCCTTGCCCCTCATGTCAGACCCGGACTGGAAGGTAGTGGGTGAGGAG AAGGAGGGGGGAGACGTTGCAGTTGAGAACAGGCGGCGGCGGTCTGCCTG GGTAGAGGTCGCTGAGGAACGGACGAAGTGCTCATCTTCCTTTGCTTCCT CCCTCTCCGCCATCCCTATCTTCCTTCCCTCATACCCCGCCTCTTCTTCC CTCTTTCTCGACAGGACGAGCACGACGGCCGGGGCAAATTCATCTGCGCA GTCTCTCGCAAGCCCATCACATCCCAGCCCACGGTTCTCATTAAGAGGTG GGTGGGAATGAAGGGGAAGAGGAAGGGGGGAGGGAGGGGCTTGTGTGTTG CAGGCACAGGCGAGAGGGAAAGAGATGAAGGGTCAGAGCTTCGGCCACAT TCAAAATCTGCAGCGTGCCGCGCACATCAGCTGACTTGGTCATATCTATT CACTCTCTGTCCGCTTTTCTCATCCCTCCCTTCCTTCCCCCGACCCTGCA TAGCACGGGCGTCGTGCTCTTGGAGAGCATTGCCAAGGAGTTGGCCTACC CATCTATGACGTGTCCCGTCACGGGCAAGATATTCAAGGTGAGACCCGAG TGAAAGGAGGGAGAACGGCTAGCGGGCAGGGAGGAGGAGTGAGGCTGGCA AGACTTGATTTTGGAAATGTAAAAAAGAAGGGAATTTCCGCGGTACAGCT ACGACCGTATGTGCATGAGTATCTCCTCCGCTCTTCATGAATTCGATCCT CTTTCGCTCATGGTATCTACCCGTCTCTCCACCGTGTCTATCTTACATAG GAAAGCGACCTCCTGCACCTGAAAGGCGGGGGGACGGGCTTCTCGGCCTC GGGCGAGGTAGAGGCCAAGAAGCACAGAGTTACCCACTTCTAA
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Coding sequence (CDS) from alignment at chr9:1186498..1189140-

>NO09G04040.1 ID=NO09G04040.1|Name=NO09G04040.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr9:1186498..1189140- (Nannochloropsis oceanica)
ATGCCGCAAAAACACTCGCGCAACAACACGGATAGGGCCGCCTTCACGTA
CCAGGAAAAGCAAATGGTGGGGTGGGGCACTCAAAAGACACGCATTGGCA
CGGACTCTCAGCAGCCCTTCGGCTACTGCTGCCTCACCCTCAAGCCCGTA
GTGGATCCTGTCGTCAGCCCATCAGGCCACGTCTACTCGCGGGAGGCCAT
TGTGGAATATCTTTTGGCCAAGACGCAGGAGCTCAAGCGACAGAAGCTGG
TCTACAAGCAACAAGAGCACAACAAGCGTGACGAGGCGGAAGCTGCACTG
GAAGACGAGAGGGAGAAGGAGGCCCAGCATTTCGTCGAGAAGCAGATGGC
GGCCGCTTCGACAGTGGCCGTGGCGGGGCAAGGTCAAGGCCCCTCCGCCG
AGCAGGAGAGGCGGGAGAAGTACATCGCCCAGCAACTCTCCAAGGCCATC
CACATGGACCTGAAGACGAAACGCGAGGAGGTCAAAAAGACCTCCTTCTG
GGTGCCTGTCTGCACGCCCGAGGCCAAGGATATGGGCATCGACAAGCCCG
ACAGGCGGCCTCGCAGCCCCACGACGGGAGACCCCCTTCGCGCCAAGGAT
TTGCTGCCCTTGCCCCTCATGTCAGACCCGGACTGGAAGGACGAGCACGA
CGGCCGGGGCAAATTCATCTGCGCAGTCTCTCGCAAGCCCATCACATCCC
AGCCCACGGTTCTCATTAAGAGCACGGGCGTCGTGCTCTTGGAGAGCATT
GCCAAGGAGTTGGCCTACCCATCTATGACGTGTCCCGTCACGGGCAAGAT
ATTCAAGGAAAGCGACCTCCTGCACCTGAAAGGCGGGGGGACGGGCTTCT
CGGCCTCGGGCGAGGTAGAGGCCAAGAAGCACAGAGTTACCCACTTCTAA
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Synonyms
Publications