NO09G04030.1, NO09G04030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04030.1
Unique NameNO09G04030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr9:1183794..1185459 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1183794..1185459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G04030.1 vs.
Match: EWM27402.1 (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana])

HSP 1 Score: 212.2 bits (539), Expect = 2.800e-51
Identity = 123/260 (47.31%), Postives = 164/260 (63.08%), Query Frame = 0 
Query:  103 PLRPLLEPTMASILQARDLICQNIASLAKRQKLDRAKTQNVQGLIQLTSKARHTVDCSAGLLPLLQHLLASQPQAFVPPSNGRSAEQGGKTMERGGLERGGGGVGDGGGFSQTPPSIPSMAGLVQHLAADESACYAVSFVDPLGVESIWCNQRMSDLFMTSEELQGLVLHTGMGTPHFWARFLTGPGLADLTAAFTSLLVGPSAHLSLDAVLDCCVKESTKEGMPAGVRKCVASVGMVVTDEGPGSILILRVLPCGRRDL 363
            P  PLL+ T ASIL AR+ +   IA LA +  LD  K  N + LI+  S+AR   D +AG+LPLL HLL +QPQAF P    R A+ GG   ERG    G  G   GG         PS++ L+Q LAADE+ACY V+ V+  G+ES+WCN RMS+LF++SEEL+GL   T M    FW RFL+GPGL +L  AF++++V  +   SLD +L+CCV+ + K        KC+A+VGM++     G++LILR+LPCGR DL
Sbjct:  287 PSLPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQAFAPKR--RKAKSGG-VGERGPPAGGAQGNSAGGD--------PSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDL 535
The following BLAST results are available for this feature:
BLAST of NO09G04030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27402.12.800e-5147.31hypothetical protein Naga_100212g6 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04030NO09G04030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04030.1NO09G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04030.1.cds1NO09G04030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04030.1.cds2NO09G04030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04030.1.cds3NO09G04030.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04030.1.cds4NO09G04030.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04030.1 ID=NO09G04030.1|Name=NO09G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
ATGCCCTCGCCCTTCTGTCCTCCGTGGCCGTCCACGCCCTCTCCGCATCC
TTGGACAACCCTCAGTCTCCAAGACGTATTGACATGGAGCATCTGGAGGA
AAGACAGCAAGGCCAGTTGCTGCGCCTCCACGCTGCCCCTACATCCTCAC
ATGCGGCAGCGACAGCAGCAGAACCAGCAGCAGTATCACAAACAGCAGCA
ATATCATCAGCAGCTCCAACAGCAGCAGCAGCACTGCCAGCAGCAGCAAC
TGTACCGATATCAAGAACAGCAGCAGCACTACCACCAAGCCCAGTCTTCT
TCACATCCGCTTCGTCCCCTTCTGGAGCCCACCATGGCCAGCATCCTCCA
GGCACGCGACTTGATATGTCAAAACATCGCCTCCTTGGCGAAGCGACAAA
AGCTTGACCGTGCCAAGACCCAGAACGTGCAGGGCCTGATCCAGTTGACG
TCGAAGGCCCGGCATACCGTAGACTGCTCCGCGGGCCTGCTCCCTTTGCT
GCAGCATCTGCTTGCCTCGCAGCCCCAGGCGTTTGTTCCTCCGAGTAATG
GTAGATCCGCAGAGCAGGGAGGAAAGACGATGGAACGAGGAGGATTAGAG
AGAGGAGGAGGAGGAGTAGGTGATGGTGGTGGCTTTTCTCAGACTCCTCC
GAGTATCCCTTCCATGGCCGGCCTCGTGCAGCACCTGGCGGCAGACGAGA
GTGCATGCTACGCCGTGAGTTTTGTGGACCCGCTGGGGGTCGAGAGCATC
TGGTGCAACCAGCGCATGAGCGACCTCTTCATGACCAGCGAGGAGCTCCA
AGGCCTCGTCTTGCACACAGGAATGGGCACTCCGCACTTCTGGGCCCGCT
TCCTGACAGGCCCGGGCCTGGCCGACCTCACAGCCGCCTTCACTTCCCTC
CTCGTCGGCCCCTCCGCCCACCTCTCCCTTGATGCCGTGCTCGACTGCTG
TGTAAAGGAGAGCACGAAAGAGGGCATGCCGGCGGGGGTCAGGAAGTGTG
TGGCCAGCGTGGGTATGGTCGTCACGGATGAGGGGCCTGGCAGCATTTTG
ATCCTCCGGGTGCTTCCGTGTGGGAGGAGGGACTTAGGGGTGGGGATGGG
AGGGAAGGGGGAGGACGGAGAGAGAGAGGAGGAGGAGTATGCCAGACCCT
TGATGTAG
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protein sequence of NO09G04030.1

>NO09G04030.1-protein ID=NO09G04030.1-protein|Name=NO09G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MPSPFCPPWPSTPSPHPWTTLSLQDVLTWSIWRKDSKASCCASTLPLHPH
MRQRQQQNQQQYHKQQQYHQQLQQQQQHCQQQQLYRYQEQQQHYHQAQSS
SHPLRPLLEPTMASILQARDLICQNIASLAKRQKLDRAKTQNVQGLIQLT
SKARHTVDCSAGLLPLLQHLLASQPQAFVPPSNGRSAEQGGKTMERGGLE
RGGGGVGDGGGFSQTPPSIPSMAGLVQHLAADESACYAVSFVDPLGVESI
WCNQRMSDLFMTSEELQGLVLHTGMGTPHFWARFLTGPGLADLTAAFTSL
LVGPSAHLSLDAVLDCCVKESTKEGMPAGVRKCVASVGMVVTDEGPGSIL
ILRVLPCGRRDLGVGMGGKGEDGEREEEEYARPLM*
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mRNA from alignment at chr9:1183794..1185459-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04030.1 ID=NO09G04030.1|Name=NO09G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp|location=Sequence derived from alignment at chr9:1183794..1185459- (Nannochloropsis oceanica)
ATGCCCTCGCCCTTCTGTCCTCCGTGGCCGTCCACGCCCTCTCCGCATCC
TTGGACAAGTAAGTTCCTGGTAGAGCAGGGGAAGAAGGCGCGCACACACA
ACATGCCCGAGCCTAGTATGTGTGTTGCACTGCAACTGAACTTCCACTTC
TCACTACACGCCCGTGCCCCGCTTCTCCCCATCCAACACAGCCCTCAGTC
TCCAAGACGTATTGACATGGAGCATCTGGAGGAAAGACAGCAAGGCCAGT
TGCTGCGGTCGGCAGGAAAAAAAAAGGATTTTTTCTTTGACAATGTCTCG
TCCTCATCCTCCTCTTCATCCTCCCGCCCAACTACGTCATCCCTCTCCTC
ATCATCTTCATCTCCCCCCCTCCCTTCTCATTGCTGCCTTCTTTGCCTTG
TCTACGCAACATCATTCCAGCCTCCACGCTGCCCCTACATCCTCACATGC
GGCAGCGACAGCAGCAGAACCAGCAGCAGTATCACAAACAGCAGCAATAT
CATCAGCAGCTCCAACAGCAGCAGCAGCACTGCCAGCAGCAGCAACTGTA
CCGATATCAAGAACAGCAGCAGCACTACCACCAAGCCCAGTCTTCTTCAC
ATCCGCTTCGTCCCCTTCTGGAGCCCACCATGGCCAGCATCCTCCAGGCA
CGCGACTTGATATGTCAAAACATCGCCTCCTTGGCGAAGCGACAAAAGCT
TGACCGTGCCAAGACCCAGAACGTGCAGGGCCTGATCCAGTTGACGTCGA
AGGCCCGGCATACCGTAGACTGCTCCGCGGGCCTGCTCCCTTTGCTGCAG
CATCTGCTTGCCTCGCAGCCCCAGGCGTTTGTTCCTCCGAGTAATGGTAG
ATCCGCAGAGCAGGGAGGAAAGACGATGGAACGAGGAGGATTAGAGAGAG
GAGGAGGAGGAGTAGGTGATGGTGGTGGCTTTTCTCAGACTCCTCCGAGT
ATCCCTTCCATGGCCGGCCTCGTGCAGCACCTGGCGGCAGACGAGAGTGC
ATGCTACGCCGTGAGTTTTGTGGACCCGCTGGGGGTCGAGAGCATCTGGT
GCAACCAGCGCATGAGCGACCTCTTCATGACCAGCGAGGGTAAGAGGGTC
ACGCGACGGGTGTGCCCCTGTCTGTGTCTCTCAGGACTTTCTGCGATCCG
CGCTCTCTCCCTTCCCCTCCCCATCGTTTTTTCACTCGTCCCCACGTGCC
CTCTTCCCTTCCTCCTCATCAACCACAAACGTAACTTCAAGCCCACTTGC
CGGCCGATCCTCATTCTCCTCTTCTTCTCTCTCTCTCTTTCCTTCCTCGA
GAGCTCCAAGGCCTCGTCTTGCACACAGGAATGGGCACTCCGCACTTCTG
GGCCCGCTTCCTGACAGGCCCGGGCCTGGCCGACCTCACAGCCGCCTTCA
CTTCCCTCCTCGTCGGCCCCTCCGCCCACCTCTCCCTTGATGCCGTGCTC
GACTGCTGTGTAAAGGAGAGCACGAAAGAGGGCATGCCGGCGGGGGTCAG
GAAGTGTGTGGCCAGCGTGGGTATGGTCGTCACGGATGAGGGGCCTGGCA
GCATTTTGATCCTCCGGGTGCTTCCGTGTGGGAGGAGGGACTTAGGGGTG
GGGATGGGAGGGAAGGGGGAGGACGGAGAGAGAGAGGAGGAGGAGTATGC
CAGACCCTTGATGTAG
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Coding sequence (CDS) from alignment at chr9:1183794..1185459-

>NO09G04030.1 ID=NO09G04030.1|Name=NO09G04030.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr9:1183794..1185459- (Nannochloropsis oceanica)
ATGCCCTCGCCCTTCTGTCCTCCGTGGCCGTCCACGCCCTCTCCGCATCC
TTGGACAACCCTCAGTCTCCAAGACGTATTGACATGGAGCATCTGGAGGA
AAGACAGCAAGGCCAGTTGCTGCGCCTCCACGCTGCCCCTACATCCTCAC
ATGCGGCAGCGACAGCAGCAGAACCAGCAGCAGTATCACAAACAGCAGCA
ATATCATCAGCAGCTCCAACAGCAGCAGCAGCACTGCCAGCAGCAGCAAC
TGTACCGATATCAAGAACAGCAGCAGCACTACCACCAAGCCCAGTCTTCT
TCACATCCGCTTCGTCCCCTTCTGGAGCCCACCATGGCCAGCATCCTCCA
GGCACGCGACTTGATATGTCAAAACATCGCCTCCTTGGCGAAGCGACAAA
AGCTTGACCGTGCCAAGACCCAGAACGTGCAGGGCCTGATCCAGTTGACG
TCGAAGGCCCGGCATACCGTAGACTGCTCCGCGGGCCTGCTCCCTTTGCT
GCAGCATCTGCTTGCCTCGCAGCCCCAGGCGTTTGTTCCTCCGAGTAATG
GTAGATCCGCAGAGCAGGGAGGAAAGACGATGGAACGAGGAGGATTAGAG
AGAGGAGGAGGAGGAGTAGGTGATGGTGGTGGCTTTTCTCAGACTCCTCC
GAGTATCCCTTCCATGGCCGGCCTCGTGCAGCACCTGGCGGCAGACGAGA
GTGCATGCTACGCCGTGAGTTTTGTGGACCCGCTGGGGGTCGAGAGCATC
TGGTGCAACCAGCGCATGAGCGACCTCTTCATGACCAGCGAGGAGCTCCA
AGGCCTCGTCTTGCACACAGGAATGGGCACTCCGCACTTCTGGGCCCGCT
TCCTGACAGGCCCGGGCCTGGCCGACCTCACAGCCGCCTTCACTTCCCTC
CTCGTCGGCCCCTCCGCCCACCTCTCCCTTGATGCCGTGCTCGACTGCTG
TGTAAAGGAGAGCACGAAAGAGGGCATGCCGGCGGGGGTCAGGAAGTGTG
TGGCCAGCGTGGGTATGGTCGTCACGGATGAGGGGCCTGGCAGCATTTTG
ATCCTCCGGGTGCTTCCGTGTGGGAGGAGGGACTTAGGGGTGGGGATGGG
AGGGAAGGGGGAGGACGGAGAGAGAGAGGAGGAGGAGTATGCCAGACCCT
TGATGTAG
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Synonyms
Publications