NO09G04010.1, NO09G04010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G04010.1
Unique NameNO09G04010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr9:1179256..1180747 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1179256..1180747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G04010.1 vs.
Match: EWM27405.1 (HopJ type III effector protein [Nannochloropsis gaditana])

HSP 1 Score: 229.6 bits (584), Expect = 8.800e-57
Identity = 119/185 (64.32%), Postives = 139/185 (75.14%), Query Frame = 0
Query:   16 LLLLMVPLITAAWGLSTST------ARHRSIGQGMINTLASQGTALFATGSSSSTTIPTTWEEQGIAGFVPPPQAVVALLGRMGPGGFGGTG--LKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLPPASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFPE 193
            LLLLM    + A  +ST T         R+ G   I++     +A+ AT +SS T+ PTTW+EQG AGF+PPP AVV LL R+GPGGFGGTG  LKF+EV+QA++  Y+YTPKPF NGD  +P GTN GSCKL SLGILHGL PASLLALFGEHYRSVIQTPKGSDH NIR+LLSKGW+AVSFPE
Sbjct:    9 LLLLMASPASQALRISTMTPFFSRQVSERAAGLSKIHSAPKSSSAVCATDTSSITSTPTTWDEQGAAGFIPPPIAVVGLLTRVGPGGFGGTGPPLKFDEVMQAIDDTYDYTPKPFKNGDVTNPAGTNAGSCKLFSLGILHGLTPASLLALFGEHYRSVIQTPKGSDHGNIRSLLSKGWQAVSFPE 193          
The following BLAST results are available for this feature:
BLAST of NO09G04010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27405.18.800e-5764.32HopJ type III effector protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G04010NO09G04010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G04010.1NO09G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G04010.1.cds1NO09G04010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04010.1.cds2NO09G04010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04010.1.cds3NO09G04010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04010.1.cds4NO09G04010.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04010.1.cds5NO09G04010.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G04010.1.cds6NO09G04010.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G04010.1 ID=NO09G04010.1|Name=NO09G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
ATGGCAGGCATACGACGTAGCGTCTCGATATGTAGCTTCCACATCCTCCT
CCTGCTCATGGTGCCGCTAATCACAGCCGCGTGGGGGCTTTCAACGTCCA
CAGCCCGCCACCGAAGCATTGGGCAAGGCATGATCAACACCCTGGCCTCT
CAAGGAACTGCCTTGTTTGCGACTGGCTCGAGCTCCTCCACCACTATCCC
CACCACCTGGGAGGAGCAAGGCATCGCCGGCTTTGTCCCACCTCCGCAGG
CTGTGGTGGCGCTGCTGGGGCGTATGGGACCGGGAGGGTTTGGAGGGACT
GGCTTAAAATTTGAGGAAGTCTTGCAGGCGATGGAAACTTATTACGAGTA
CACACCCAAGCCCTTCGTCAACGGCGACGCATTCAGCCCCCCTGGCACCA
ACGTTGGCTCTTGCAAGCTCCTGTCCCTTGGCATCCTACATGGCCTGCCG
CCTGCCTCCTTGCTGGCTCTTTTTGGCGAGCACTATAGGTCCGTGATCCA
GACGCCCAAAGGGAGCGACCACATCAACATTCGCAACCTCCTCTCCAAGG
GATGGCGGGCCGTCTCTTTCCCAGAAGGACTTAGCTTGCGGCTCAAGGAG
TAG
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protein sequence of NO09G04010.1

>NO09G04010.1-protein ID=NO09G04010.1-protein|Name=NO09G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MAGIRRSVSICSFHILLLLMVPLITAAWGLSTSTARHRSIGQGMINTLAS
QGTALFATGSSSSTTIPTTWEEQGIAGFVPPPQAVVALLGRMGPGGFGGT
GLKFEEVLQAMETYYEYTPKPFVNGDAFSPPGTNVGSCKLLSLGILHGLP
PASLLALFGEHYRSVIQTPKGSDHINIRNLLSKGWRAVSFPEGLSLRLKE
*
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mRNA from alignment at chr9:1179256..1180747+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G04010.1 ID=NO09G04010.1|Name=NO09G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp|location=Sequence derived from alignment at chr9:1179256..1180747+ (Nannochloropsis oceanica)
ATGGCAGGCATACGACGTAGCGTCTCGATATGTAGCTTCCACATCCTCCT CCTGCTCATGGTGCCGCTAATCACAGCCGCGTGGGGGCTTTCAACGTCCA CAGCCCGCCACCGAAGCATTGGGCAAGGTAATGAGAGTGGACCGATCGGG CGGCGGGGCCAAGACGGAGATAGATGATAGGAGTCGGACGGATGATGGGT GGAGGATTATGGGGAGGTCGAGTACAAGGCAACTAAGCGGAGACACGGCA TTTTATCAACCGTCACGCAGGCATGATCAACACCCTGGCCTCTCAAGGAA CTGCCTTGTTTGCGACTGGCTCGAGGTAAGTTAACTCTCTGTGTGGCTTC ACCCCACCCAGCGCATCCTCTCCCTTCTCCCTCCCGCTCCCTCGGATCAT TCACACGCATCCCATCCACACACCATTCACCGTTCCAGCTCCTCCACCAC TATCCCCACCACCTGGGAGGAGCAAGGCATCGCCGGCTTTGTCCCACCTC CGCAGGCTGTGGTGGCGCTGCTGGGGCGTATGGGACCGGGAGGGTTTGGA GGGACTGGCTTAAAATTTGAGGAAGTCTTGCAGGTTGGTCTGGGTGTACA GGGAGAAATTTTTAGGATGGGAAGCCGATATAAAAAGAGGGGCGGGGGGT AGGGGAGATGAAAATGTGCTCGTGCTAGAAGAGTGGCTTGGATATGATCC ATTGCGTACGAAGCATATTCGCAATTACTGCAACGAGAGGCAGGCGACCA CAGGCAACCACTGGCCTACCCAAAGCGATTTGCCAACCGATTTATCAAAC CGCTCCGACTTTCTGGGTCGGATGAATAGCAGTTTACAGTCTTGTCTTCA GCCGACTCTAAGTGTCGCACCTTTTGTACTTCTACCCTTTCCCGCAGGCG ATGGAAACTTATTACGAGTACACACCCAAGCCCTTCGTCAACGGCGACGC ATTCAGCCCCCCTGGCACCAACGTTGTACGTTTATGCTTGAGTTATAGAT TGTAACATATTCTATGCAGGGAAGCAGATGGATTCACATTCTTTCCTTCC GCCTTCTATCCATTTCGCTCTTGTATCTCCGTGCAGGGCTCTTGCAAGCT CCTGTCCCTTGGCATCCTACATGGCCTGCCGCCTGCCTCCTTGCTGGCTC TTTTTGGTACGTACCAGGAGGATCAATGCCTTTCATGTGCTTTTTCCTCC TCAATGGATGTGCCTCTTCTTATATCCACTATGACCCATTCGCGTGCAAC CTCCTTACCTCCCTTGTCCGCGGGCTTCACAGTCTCTTCTCCGTGAAAGC TGCCAACATCTAACCACGTGCTTATCGCTCCTCCATTCGTTACTTTTACT CCCAACTGAAAAAGGCGAGCACTATAGGTCCGTGATCCAGACGCCCAAAG GGAGCGACCACATCAACATTCGCAACCTCCTCTCCAAGGGATGGCGGGCC GTCTCTTTCCCAGAAGGACTTAGCTTGCGGCTCAAGGAGTAG
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Coding sequence (CDS) from alignment at chr9:1179256..1180747+

>NO09G04010.1 ID=NO09G04010.1|Name=NO09G04010.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr9:1179256..1180747+ (Nannochloropsis oceanica)
ATGGCAGGCATACGACGTAGCGTCTCGATATGTAGCTTCCACATCCTCCT
CCTGCTCATGGTGCCGCTAATCACAGCCGCGTGGGGGCTTTCAACGTCCA
CAGCCCGCCACCGAAGCATTGGGCAAGGCATGATCAACACCCTGGCCTCT
CAAGGAACTGCCTTGTTTGCGACTGGCTCGAGCTCCTCCACCACTATCCC
CACCACCTGGGAGGAGCAAGGCATCGCCGGCTTTGTCCCACCTCCGCAGG
CTGTGGTGGCGCTGCTGGGGCGTATGGGACCGGGAGGGTTTGGAGGGACT
GGCTTAAAATTTGAGGAAGTCTTGCAGGCGATGGAAACTTATTACGAGTA
CACACCCAAGCCCTTCGTCAACGGCGACGCATTCAGCCCCCCTGGCACCA
ACGTTGGCTCTTGCAAGCTCCTGTCCCTTGGCATCCTACATGGCCTGCCG
CCTGCCTCCTTGCTGGCTCTTTTTGGCGAGCACTATAGGTCCGTGATCCA
GACGCCCAAAGGGAGCGACCACATCAACATTCGCAACCTCCTCTCCAAGG
GATGGCGGGCCGTCTCTTTCCCAGAAGGACTTAGCTTGCGGCTCAAGGAG
TAG
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Synonyms
Publications