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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:1177263..1179090 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G04000.2 vs.
Match: EWM27400.1 (short chain dehydrogenase reductase [Nannochloropsis gaditana]) HSP 1 Score: 304.7 bits (779), Expect = 3.700e-79 Identity = 159/201 (79.10%), Postives = 177/201 (88.06%), Query Frame = 0
Query: 148 RPLDSTRSSSPTIQTALLAAVAKETGGKLHVLINNAGTNWAEPIESYPLHAFDKVVSLNLTSLFSLTRLALPLLEAAATPHDPARVINIGSIDGKRVTLIDHFAYSSSKAAVHRLSRVLAGKLGHRNITVNALAPGPFASKMMKVTLERAREEIEGSAALGRIGHPEDIAGAALFLASRAGAYVTGAVLVVDGGILVKPKL 349
R L + S + Q LL+AVA+ET GKLHVL+NNAGTNWAEP+ESYP+ AF+KVV+LNL + FSLTRLALPLLEA AT +PARVINIGSIDG RVTLIDHFAYSSSKAA+H+LS+VLAGKLGHR+ITVN LAPGPFASKMMKVTL RA+EEIE ALGRIG PED+AGAALFLASRAGAYVTGAVLVVDGGILVKP+L
Sbjct: 81 RGLTADLSKGESEQMNLLSAVARETAGKLHVLVNNAGTNWAEPVESYPIKAFEKVVALNLLAAFSLTRLALPLLEATATLGNPARVINIGSIDGARVTLIDHFAYSSSKAALHQLSKVLAGKLGHRHITVNTLAPGPFASKMMKVTLARAQEEIEAGTALGRIGSPEDMAGAALFLASRAGAYVTGAVLVVDGGILVKPRL 281
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G04000.2 ID=NO09G04000.2|Name=NO09G04000.2|organism=Nannochloropsis oceanica|type=mRNA|length=1078bp ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG TCAGGTGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGC GGCGGAAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTC GAGGCCTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGGTGCGGGTA TAGATGTGGCCAAAAATTGATGACGGAGGGAAGGGGGAGGACAGGCTTCC CTACTACATTCAATCGCATGTCCGCAATCCTTACCCCCCTTCGTCCCTTG GACTCGACCCGGTCTTCCTCCCCCACGATTCAGACCGCCCTCTTAGCAGC AGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATGCGG GTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTCGAC AAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCTGGC ATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGGTCA TCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCACTTC GCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCTGGC CGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGGGGC CGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAGGAG ATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACATTGC GGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGGGCG CGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGAGGG CGGGAGGGAGGGAGGGAGGGAGGGAGGG back to topprotein sequence of NO09G04000.2 >NO09G04000.2-protein ID=NO09G04000.2-protein|Name=NO09G04000.2|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp MSLLLALRKHSSDNNNYNSVMAPSSIASSSSSLSISHLFDVTGKTVLITG GGTGIGRMLAQGFVDNGQVPESLSPLEEKPSKPRRKSLAPPPSLPPLPSV EASQQIWPRGKASRCGYRCGQKLMTEGRGRTGFPTTFNRMSAILTPLRPL DSTRSSSPTIQTALLAAVAKETGGKLHVLINNAGTNWAEPIESYPLHAFD KVVSLNLTSLFSLTRLALPLLEAAATPHDPARVINIGSIDGKRVTLIDHF AYSSSKAAVHRLSRVLAGKLGHRNITVNALAPGPFASKMMKVTLERAREE IEGSAALGRIGHPEDIAGAALFLASRAGAYVTGAVLVVDGGILVKPKL* back to topmRNA from alignment at chr9:1177263..1179090- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G04000.2 ID=NO09G04000.2|Name=NO09G04000.2|organism=Nannochloropsis oceanica|type=mRNA|length=1828bp|location=Sequence derived from alignment at chr9:1177263..1179090- (Nannochloropsis oceanica) ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA
CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT
CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC
GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG
TCAGGTGTTGTAACAGAAGTTTTCATGCCTCCTTCTTTTTGTGTGCGTGG
GTCATGAGCGTGCATACTGACGCGTAGGCTAGCATCCTAACTTATTTCAC
GAATTCATGCTGCCCTCCCGAACGCCCCGCGCCTCCCCGCAACGTGACCC
TTCCAGTACTCCCCCCCACTCCTGTTGACTTCTTTCCTCCCTTTTCCCTC
CCCCCTTTTCCACTTTTCATGAAAAGGTGCCCGAGTCTTTATCGCCTCTC
GAAGAGAAGCCAAGCAAGCCGCGGCGGAAATCGTTGGCGCCTCCTCCCTC
CCTCCCTCCCTTGCCTTCTGTCGAGGCCTCACAGCAGATCTGGCCAAGGG
GGAAGGCGAGCAGGTGCGGGTATAGATGTGGCCAAAAATTGATGACGGAG
GGAAGGGGGAGGACAGGCTTCCCTACTACATTCAATCGCATGTCCGCAAT
CCTTACCCCCCTTCGTCCCTTGGACTCGACCCGGTCTTCCTCCCCCACGA
TTCAGACCGCCCTCTTAGCAGCAGTGGCCAAGGAGACGGGTGGCAAGTTA
CACGTTCTTATCAACAATGCGGGTACCAACTGGGCGGAGCCTATAGAATC
CTACCCCTTGCACGTACGTGGGGAGGCAAGGAAGGAGAGGGAGGAACAGA
GGGCGACGGTCCAAGTGATCCCTGTTATCCACTCTCCCGTCTTTTCCTTC
TCTTGCAGGCGTTCGACAAAGTCGTGTCTCTTAACCTTACGTCTCTCTTC
AGTCTCACCCGCCTGGCATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCA
CGACCCCGCTCGGGTCATCAATATAGGTAGGTGGATGCTCCCCTTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTCAGCCTCCTCTTCCCCTTTTCCT
TCCCACACATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCAC
TTCGCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCT
GGCCGGAAAGTTAGGTAGGGCCTCCCTCCCTCCCTCCTTTCCTCCCTCCC
TCCCCCCTTCCTTCCTTCTTTCCTTCCTTCCCTCAAGAGGTCTCCTTTAC
CAAGAGGTATCCTCTGTTTTCCAAGAAAAATGGCATTCATCGATAACAGA
ATTCAGAAGAACCTCCCCCTCCCCCTCCCTCCCTCCTTCCCTCCCCCCCT
CTCTCCCTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGGGGC
CGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAGGAG
ATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGTAGGGAG
GGAGGGAGGGAAGGACGGGGGGAGAAGGAGGAGGAGGGGGATCGGAACAG
ACAGTCACACAGGCAATGCAGGGGGCCCACCCCCTGCGTGTGTTCTGACC
CTGCCCTGCCTCCCTCCCTCCCTCCCTCCCTGCTTCCGTCAGGACATTGC
GGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGGGCG
CGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGAGGG
CGGGAGGGAGGGAGGGAGGGAGGGAGGG back to topCoding sequence (CDS) from alignment at chr9:1177263..1179090- >NO09G04000.2 ID=NO09G04000.2|Name=NO09G04000.2|organism=Nannochloropsis oceanica|type=CDS|length=1047bp|location=Sequence derived from alignment at chr9:1177263..1179090- (Nannochloropsis oceanica) ATGTCTCTGCTCCTCGCCCTACGAAAACACAGCAGCGACAACAACAATTA CAACAGTGTCATGGCCCCTTCTTCCATCGCCTCTTCTTCTTCATCTCTTT CTATTAGCCATCTCTTTGACGTGACGGGCAAGACAGTCCTCATTACAGGC GGCGGCACGGGCATCGGCCGCATGCTGGCTCAAGGCTTCGTTGACAATGG TCAGGTGCCCGAGTCTTTATCGCCTCTCGAAGAGAAGCCAAGCAAGCCGC GGCGGAAATCGTTGGCGCCTCCTCCCTCCCTCCCTCCCTTGCCTTCTGTC GAGGCCTCACAGCAGATCTGGCCAAGGGGGAAGGCGAGCAGGTGCGGGTA TAGATGTGGCCAAAAATTGATGACGGAGGGAAGGGGGAGGACAGGCTTCC CTACTACATTCAATCGCATGTCCGCAATCCTTACCCCCCTTCGTCCCTTG GACTCGACCCGGTCTTCCTCCCCCACGATTCAGACCGCCCTCTTAGCAGC AGTGGCCAAGGAGACGGGTGGCAAGTTACACGTTCTTATCAACAATGCGG GTACCAACTGGGCGGAGCCTATAGAATCCTACCCCTTGCACGCGTTCGAC AAAGTCGTGTCTCTTAACCTTACGTCTCTCTTCAGTCTCACCCGCCTGGC ATTGCCTCTTCTCGAAGCAGCTGCCACGCCCCACGACCCCGCTCGGGTCA TCAATATAGGATCCATTGATGGGAAGCGCGTGACGCTCATCGACCACTTC GCCTACTCCTCCTCCAAAGCCGCCGTGCACCGACTCTCCAGGGTCCTGGC CGGAAAGTTAGGCCACCGGAACATAACCGTCAACGCCTTGGCCCCGGGGC CGTTTGCGAGCAAGATGATGAAGGTGACGTTGGAGCGAGCGCGAGAGGAG ATAGAAGGGAGTGCGGCCTTGGGGAGAATCGGGCATCCAGAGGACATTGC GGGTGCGGCCTTGTTCCTGGCCTCGCGTGCAGGGGCCTACGTAACGGGCG CGGTGCTGGTGGTGGATGGGGGCATCCTGGTCAAGCCCAAGTTATGA back to top
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