NO09G03870.1, NO09G03870.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03870.1
Unique NameNO09G03870.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1134
Alignment locationchr9:1123292..1125290 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1123292..1125290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03870.1 vs.
Match: EWM27414.1 (hypothetical protein Naga_100138g7 [Nannochloropsis gaditana])

HSP 1 Score: 309.3 bits (791), Expect = 1.200e-80
Identity = 168/226 (74.34%), Postives = 185/226 (81.86%), Query Frame = 0 
Query:   49 MVIRRPCFFLPLLLAGAAIISPSLAFLPPSTPPPPASSSSSFSSTATIISAEIRRLLPLFLPSAALCLGATPPQPSYAFGEDIAAKVQKSLKEDTTKKYTDDGMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDGQYVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPIVEEEDKKATSTGSSSQKPLEEDDADLFEDGEDV 275
            M+IR  C  L  ++A AA+ S   AFLPP TPPPP    + F        A    L+ + LPSAALC GA PPQP+ AFGEDIAAKVQKSL EDTTKKYT+DGMDLVETLK+RTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVM+KDGQYVLLTE++Y TLK EGKIVGRDFVVDY+  SAPAAVEAP++EEEDKKATSTGSSSQK LEEDDADLFEDG+ V
Sbjct:    1 MLIRSYCAALSFIVA-AALFSSVFAFLPPPTPPPPTPKVTQFKP---YFHAIFHHLVAVVLPSAALCFGAVPPQPANAFGEDIAAKVQKSLNEDTTKKYTEDGMDLVETLKRRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMKKDGQYVLLTEDQYNTLKGEGKIVGRDFVVDYQAESAPAAVEAPVIEEEDKKATSTGSSSQKTLEEDDADLFEDGDAV 222
The following BLAST results are available for this feature:
BLAST of NO09G03870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27414.11.200e-8074.34hypothetical protein Naga_100138g7 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03870NO09G03870Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03870.1NO09G03870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03870.1.cds1NO09G03870.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03870.1.cds2NO09G03870.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03870.1.cds3NO09G03870.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03870.1.cds4NO09G03870.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03870.1.cds5NO09G03870.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03870.1.cds6NO09G03870.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03870.1 ID=NO09G03870.1|Name=NO09G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
CGTCCTTTGGCATGATTCACCTGTGCATGTGTGCGTGGGTCGTGGGTTAG
AACAGGGTTTGGGAAGGAGGAAAGGGGCAGAGACGTCCAACAGCGATAAG
AGCGAACGGTCGAGCCCAAGCGCTGCTGCAACTTAGGGGCGACTGCAGCT
AGCAGCATCCATCGCCCAACGTACGTTGGTCTTGTTGTTGTGGTCGATAT
AAAGAGCGGCATGTCGGACGCGGCCGTGTATGCACGGTCAGCAAGGTTGC
AACCTCCTCCCTTCCTCAGGAGGGCTCTATCTCCTCTCCCCCTCCCCCCC
CACTTTCTCATCCCCTCTCACCATCCTCCGTCCCACTCAACATGTACACA
CAGCCAACCCCCTAACCACTACTATGGTAATTAGACGGCCTTGTTTCTTC
CTACCCCTCCTGCTGGCCGGGGCGGCCATCATCAGCCCCTCCTTAGCATT
CTTACCCCCATCCACCCCTCCTCCCCCCGCCTCCTCCTCCTCCTCCTTCT
CCTCCACTGCCACCATCATTTCCGCCGAAATCCGTCGTCTCCTCCCCCTA
TTTCTCCCCTCGGCTGCCTTGTGTCTAGGTGCCACCCCGCCACAGCCGTC
TTACGCTTTTGGGGAAGACATCGCGGCCAAGGTGCAGAAGTCCCTAAAGG
AGGACACGACCAAGAAGTACACGGACGACGGCATGGACCTCGTCGAGACC
CTGAAAAAACGCACCATCCAGAACAAGGCCAAGAACGACCGTATTTTGAT
GGAGAAAACTTTCCTCAACTCGGAGGCAGGCATCTACGGGCCCTTCGACA
AGTTCATCCCGGTGATGCGGAAGGACGGGCAGTACGTGCTCCTAACCGAG
GAGGAGTACAAGACCCTCAAGAACGAGGGCAAGATCGTCGGCAGGGATTT
CGTCGTCGATTATGAAGTGGCAAGCGCCCCGGCAGCCGTTGAGGCGCCAA
TTGTGGAAGAGGAAGACAAGAAGGCCACATCCACAGGATCATCGTCTCAG
AAGCCGTTGGAGGAGGATGACGCCGACTTGTTCGAGGACGGCGAAGACGT
CGTGTAGAGGGAGGGAAGGAGGGAGAGAAGGAGGGAGGGAGGGAAGGAGG
GAAGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGA
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protein sequence of NO09G03870.1

>NO09G03870.1-protein ID=NO09G03870.1-protein|Name=NO09G03870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MHGQQGCNLLPSSGGLYLLSPSPPTFSSPLTILRPTQHVHTANPLTTTMV
IRRPCFFLPLLLAGAAIISPSLAFLPPSTPPPPASSSSSFSSTATIISAE
IRRLLPLFLPSAALCLGATPPQPSYAFGEDIAAKVQKSLKEDTTKKYTDD
GMDLVETLKKRTIQNKAKNDRILMEKTFLNSEAGIYGPFDKFIPVMRKDG
QYVLLTEEEYKTLKNEGKIVGRDFVVDYEVASAPAAVEAPIVEEEDKKAT
STGSSSQKPLEEDDADLFEDGEDVV*
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mRNA from alignment at chr9:1123292..1125290+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03870.1 ID=NO09G03870.1|Name=NO09G03870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1999bp|location=Sequence derived from alignment at chr9:1123292..1125290+ (Nannochloropsis oceanica)
CGTCCTTTGGCATGATTCACCTGTGCATGTGTGCGTGGGTCGTGGGTTAG
AACAGGGTTTGGGAAGGAGGAAAGGGGCAGAGACGTCCAACAGCGATAAG
AGCGAACGGTCGAGCCCAAGCGCTGCTGCAACTTAGGGGCGACTGCAGCT
AGCAGCATCCATCGCCCAACGTACGTTGGTCTTGTTGTTGTGGTCGATAT
AAAGAGCGGCATGTCGGACGCGGCCGTGTATGCACGGTCAGCAAGGTTGC
AACCTCCTCCCTTCCTCAGGAGGGCTCTATCTCCTCTCCCCCTCCCCCCC
CACTTTCTCATCCCCTCTCACCATCCTCCGTCCCACTCAACATGTACACA
CAGCCAACCCCCTAACCACTACTATGGTAATTAGACGGCCTTGTTTCTTC
CTACCCCTCCTGCTGGCCGGGGCGGCCATCATCAGCCCCTCCTTAGCATT
CTTACCCCCATCCACCCCTCCTCCCCCCGCCTCCTCCTCCTCCTCCTTCT
CCTCCACTGCCACCATCATTTCCGCCGAAATCCGTCGTCTCCTCCCCCTA
TTTCTCCCCTCGGCTGCCTTGTGTCTAGGTGCCACCCCGCCACAGCCGTC
TTACGCTTTTGGGGAAGACATCGCGGCCAAGGTAAGGCAAATGGGAGGCG
GAGGCGGGGAGGGACGAACGACGCACAGGAGAGGACATTGAGACATTGAC
ATCCCTGGAGCTCGCCGTCGAGTACCACCTACGTGTGCCTATTCTCCATG
TGTGTACCTACCCATCACCAGTGTTTCACGTCTTTTTCTTCTCTACTGCC
TCTGCACAGGTGCAGAAGTCCCTAAAGGAGGACACGACCAAGAAGTACAC
GGACGACGGCATGGACCTCGTCGAGACCCTGAAAAAACGGTGCGTAGCTT
GGAAACGAGAGGATGGAGGAGCTTTAGAAGAGGGGGAAATCGAAGAATAA
ATGCGTGCCTTGGACGATTGGTTCAGATTCTCGTGCTCTTGCCCCGAACA
CGCGAGATTGTCCGTCCTGTCGAGAAGAGGGCCTCTACACAATTCCTGAA
CCATTTTCCCCCCGCCCTCCCTCACCCCCTCTCTCCCTGTCCCTCCCGTC
TTATCCCCTTGCAGCACCATCCAGAACAAGGCCAAGAACGACCGTATTTT
GATGGAGAAAACTTTCCTCAACTCGGAGGCAGGCATCTACGGGCCCTTCG
ACAAGTAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGCAGGGGACGAAG
TACCCAGAAGTGAGAGATCCCCACGCACAACTCCACCTCCCCCCCTCCCT
CCCTCCCTCGCTCTGGTAGGTTCATCCCGGTGATGCGGAAGGACGGGCAG
TACGTGCTCCTAACCGAGGAGGAGTACAAGACCCTCAAGAACGAGGGCAA
GATCGTCGGCAGGGATTTCGTCGTCGATTATGAAGTACGTCCCTCTCTTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCTCATCTTCTTCAATTCTTCCTC
CCCTTAATACCTACCTACCTACCTACCTACCTACCTCCCTCCCTCCCAGG
TGGCAAGCGCCCCGGCAGCCGTTGAGGCGCCAATTGTGGAAGAGGAAGAC
AAGAAGGCCACATCCACAGGTAGGCAGGCAGGCAAGGAGGGAAGGAGGGA
GGGAGGGACAGGAGGGGGGGAGGGAGGGGAGGAAGACAATGCCAGATCCA
CAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGACC
CATTGGTCAAAGAGAAGGGCGGGGAGGGAGGGAGGAAGAGGGGAGGAAGG
GAGGGAGGACGAAGAACTCATTTCTCTCTTGATGTTTGTCGTCCCGTCCA
GGATCATCGTCTCAGAAGCCGTTGGAGGAGGATGACGCCGACTTGTTCGA
GGACGGCGAAGACGTCGTGTAGAGGGAGGGAAGGAGGGAGAGAAGGAGGG
AGGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGA
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Coding sequence (CDS) from alignment at chr9:1123292..1125290+

>NO09G03870.1 ID=NO09G03870.1|Name=NO09G03870.1|organism=Nannochloropsis oceanica|type=CDS|length=828bp|location=Sequence derived from alignment at chr9:1123292..1125290+ (Nannochloropsis oceanica)
ATGCACGGTCAGCAAGGTTGCAACCTCCTCCCTTCCTCAGGAGGGCTCTA
TCTCCTCTCCCCCTCCCCCCCCACTTTCTCATCCCCTCTCACCATCCTCC
GTCCCACTCAACATGTACACACAGCCAACCCCCTAACCACTACTATGGTA
ATTAGACGGCCTTGTTTCTTCCTACCCCTCCTGCTGGCCGGGGCGGCCAT
CATCAGCCCCTCCTTAGCATTCTTACCCCCATCCACCCCTCCTCCCCCCG
CCTCCTCCTCCTCCTCCTTCTCCTCCACTGCCACCATCATTTCCGCCGAA
ATCCGTCGTCTCCTCCCCCTATTTCTCCCCTCGGCTGCCTTGTGTCTAGG
TGCCACCCCGCCACAGCCGTCTTACGCTTTTGGGGAAGACATCGCGGCCA
AGGTGCAGAAGTCCCTAAAGGAGGACACGACCAAGAAGTACACGGACGAC
GGCATGGACCTCGTCGAGACCCTGAAAAAACGCACCATCCAGAACAAGGC
CAAGAACGACCGTATTTTGATGGAGAAAACTTTCCTCAACTCGGAGGCAG
GCATCTACGGGCCCTTCGACAAGTTCATCCCGGTGATGCGGAAGGACGGG
CAGTACGTGCTCCTAACCGAGGAGGAGTACAAGACCCTCAAGAACGAGGG
CAAGATCGTCGGCAGGGATTTCGTCGTCGATTATGAAGTGGCAAGCGCCC
CGGCAGCCGTTGAGGCGCCAATTGTGGAAGAGGAAGACAAGAAGGCCACA
TCCACAGGATCATCGTCTCAGAAGCCGTTGGAGGAGGATGACGCCGACTT
GTTCGAGGACGGCGAAGACGTCGTGTAG
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Synonyms
Publications