NO09G03860.1, NO09G03860.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03860.1
Unique NameNO09G03860.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1553
Alignment locationchr9:1121065..1123643 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1121065..1123643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03860.1 vs.
Match: EWM27422.1 (glutathione s-transferase mu 1 [Nannochloropsis gaditana])

HSP 1 Score: 454.9 bits (1169), Expect = 1.900e-124
Identity = 224/294 (76.19%), Postives = 256/294 (87.07%), Query Frame = 0 
Query:    1 MPKDDNKHTLLLAVAAIAATAGALAVPLSSLMRRAYIQHRHKRHTRFTLGSWRAREYGQAVRYLLAYLELPWQDRYFELGPAPDYNQLAWVDAKGEAARDKAEVPFSEQGLTTYLVMEERGWLKPKEGGKEGGGWGKKRKGVKHARTIMRCLGRQHGLIGRNVKEMEAVDLLLDELQDFNLAIHALVHSPSFLREKERFLTSVLPTRLRGFENWLLNEKRVHKKSTPTGGLWLVGGRLTVADFVMYDLLCQARTLCPSALTTLRELQDFTYRFESLPAIAAFLGSEACQLLPLY 295
            M K +N HT+L AVAA AATAGALA PLSS++ RAY +HRH++HT FTLGSWRAREYGQAVRYLLAYLELPW+DR+F++GP PDY+QLAWVDAK EAA DKA VPFS QGLTTYLV+EERGW +    G+EG     KRKGVKHARTIMR LGRQ+GLIGRNVKEMEAVDLLLDELQDF LA+H LVH+PS+ REKERF T+ L +RL GFE+WLLNEK+ HKKS+PTGGLWLVGGR+TVADFV+YDLL QARTL P AL++ RELQDFTYRFE+LP+IA +LGSEACQLLPL+
Sbjct:   17 MSKTENNHTVLFAVAATAATAGALAGPLSSMVHRAYKRHRHRKHTHFTLGSWRAREYGQAVRYLLAYLELPWKDRFFDMGPGPDYHQLAWVDAKDEAAHDKAVVPFSAQGLTTYLVVEERGWCQM---GREG-----KRKGVKHARTIMRYLGRQYGLIGRNVKEMEAVDLLLDELQDFTLALHRLVHNPSYAREKERFFTTALASRLGGFEDWLLNEKKTHKKSSPTGGLWLVGGRMTVADFVLYDLLSQARTLYPPALSSHRELQDFTYRFEALPSIAQYLGSEACQLLPLF 302
The following BLAST results are available for this feature:
BLAST of NO09G03860.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27422.11.900e-12476.19glutathione s-transferase mu 1 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03860NO09G03860Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03860.1NO09G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03860.1.cds1NO09G03860.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03860.1.cds2NO09G03860.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03860.1.cds3NO09G03860.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03860.1.cds4NO09G03860.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03860.1.cds5NO09G03860.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03860.1.cds6NO09G03860.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03860.1.cds7NO09G03860.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03860.1.cds8NO09G03860.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03860.1 ID=NO09G03860.1|Name=NO09G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=1553bp
TGTGTGTACATGTTGAGTGGGACGGAGGATGGTGAGAGGGGATGAGAAAG
TGGGGGGGGAGGGGGAGAGGAGATAGAGCCCTCCTGAGGAAGGGAGGAGG
TTGCAACCTTGCTGACCGTGCATACACGGCCGCGTCCGACATGCCGCTCT
TTATATCGACCACAACAACAAGACCAACGTACGTTGGGCGATGGATGCTG
CTAGCTGCAGTCGCCCCTAAGTTGCAGCAGCGCTTGGGCTCGACCGTTCG
CTCTTATCGCTGTTGGACGTCTCTGCCCCTTTCCTCCTTCCCAAACCCTG
TTCTAACCCACGACCCACGCACACATGCACAGGTGAATCATGCCAAAGGA
CGACAATAAGCACACGCTACTACTCGCTGTCGCTGCAATCGCTGCCACCG
CCGGTGCCCTTGCCGTTCCCCTCTCCTCCCTAATGCGTCGGGCCTACATC
CAGCATCGTCACAAGCGGCACACGCGCTTTACTCTAGGTTCCTGGCGGGC
GCGGGAATATGGACAAGCGGTGCGCTACCTGCTGGCCTACCTCGAGCTCC
CTTGGCAGGATCGTTACTTCGAGCTGGGCCCCGCACCTGACTATAACCAG
CTGGCTTGGGTGGACGCCAAGGGGGAAGCCGCCCGGGACAAGGCCGAGGT
ACCCTTCAGTGAGCAGGGTCTGACCACATACCTCGTCATGGAGGAGCGGG
GGTGGCTCAAGCCGAAGGAGGGCGGGAAGGAGGGAGGGGGGTGGGGCAAG
AAGAGGAAAGGAGTGAAACACGCGCGGACCATCATGCGGTGCCTGGGGCG
GCAACACGGCCTCATCGGACGGAACGTGAAGGAGATGGAGGCCGTGGACC
TGCTGCTGGACGAACTGCAGGACTTCAACCTCGCCATCCACGCCTTGGTC
CACAGCCCCTCTTTCCTCCGGGAGAAGGAGCGTTTTCTCACCTCCGTCCT
CCCGACCCGCCTCCGGGGCTTTGAGAACTGGCTCCTCAACGAGAAGAGGG
TCCACAAGAAGAGCACGCCGACCGGAGGCCTCTGGCTGGTTGGCGGGCGA
TTGACAGTCGCAGATTTCGTGATGTACGACCTTCTCTGCCAAGCCCGCAC
CCTCTGCCCCAGCGCTCTGACCACCCTCCGCGAGCTCCAAGACTTCACCT
ATCGCTTCGAGTCCCTTCCCGCCATCGCGGCCTTCCTCGGATCGGAGGCG
TGTCAGCTGTTGCCGCTGTACACGAGCAGGGCGGCCTTTAACCCGTGAGT
GAGAGGGGGGAGGGGGAAGGAAAAGACAATAAGAGGCGAACATAGGACAG
ACGGAGCACTGAACAACGACGACGACGACGGAGATGACGATAAAGAGGAG
GAAAAAGAAGAGGAAGAAGAAGAAGAGGAAAAAGAAGGAGAAGAAGAAGA
CGGAGAAGAAGTAGAAGGAAGAAAAAAAATGTAGTCAGAAAAAATGAAGA
AGAGGGAAAATGAGGAGGATGAGGAGGAGGAGGTGGAGAAGGTGGAATGA
TGGAGAGTATCTATCCATGTGCGTGTTACTACTACAACGACTACTACGAC
GAC
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protein sequence of NO09G03860.1

>NO09G03860.1-protein ID=NO09G03860.1-protein|Name=NO09G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MPKDDNKHTLLLAVAAIAATAGALAVPLSSLMRRAYIQHRHKRHTRFTLG
SWRAREYGQAVRYLLAYLELPWQDRYFELGPAPDYNQLAWVDAKGEAARD
KAEVPFSEQGLTTYLVMEERGWLKPKEGGKEGGGWGKKRKGVKHARTIMR
CLGRQHGLIGRNVKEMEAVDLLLDELQDFNLAIHALVHSPSFLREKERFL
TSVLPTRLRGFENWLLNEKRVHKKSTPTGGLWLVGGRLTVADFVMYDLLC
QARTLCPSALTTLRELQDFTYRFESLPAIAAFLGSEACQLLPLYTSRAAF
NP*
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mRNA from alignment at chr9:1121065..1123643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03860.1 ID=NO09G03860.1|Name=NO09G03860.1|organism=Nannochloropsis oceanica|type=mRNA|length=2579bp|location=Sequence derived from alignment at chr9:1121065..1123643- (Nannochloropsis oceanica)
TGTGTGTACATGTTGAGTGGGACGGAGGATGGTGAGAGGGGATGAGAAAG
TGGGGGGGGAGGGGGAGAGGAGATAGAGCCCTCCTGAGGAAGGGAGGAGG
TTGCAACCTTGCTGACCGTGCATACACGGCCGCGTCCGACATGCCGCTCT
TTATATCGACCACAACAACAAGACCAACGTACGTTGGGCGATGGATGCTG
CTAGCTGCAGTCGCCCCTAAGTTGCAGCAGCGCTTGGGCTCGACCGTTCG
CTCTTATCGCTGTTGGACGTCTCTGCCCCTTTCCTCCTTCCCAAACCCTG
TTCTAACCCACGACCCACGCACACATGCACAGGTGAATCATGCCAAAGGA
CGACAATAAGCACACGCTACTACTCGCTGTCGCTGCAATCGCTGCCACCG
CCGGTGCCCTTGCCGTTCCCCTCTCCTCCCTAATGCGTCGGGCCTACATC
CAGCATCGTCACAAGCGGCACACGCGCTTTACTCTAGGTATATGGGATAT
CTCGGGAGCACGCAGTTGGATAGGGAGGGAAGGGGGGGAGAAATGTCGGA
TGTGGGAGGGCATTTTGGGAAGATGACCACAGTCTTTCCTAAATAGGTGA
GGAGGAGGAGGAGCGCATCGAGCAGGACTGTCTGTTGCGCGCAGCGGCGC
CACTTTCCCAGTCTGCTGTTCGCTTCTCCAACCCGTTAAAAATGAAAATG
TGCGAAACCATCACGCTCAATTCATCCACTCGCACCCTCACGCACAGGTT
CCTGGCGGGCGCGGGAATATGGACAAGCGGTGCGCTACCTGCTGGCCTAC
CTCGAGCTCCCTTGGCAGGCACGTACTTTCCTCCCTCCCCCCCTCCCTTC
ATTGTGACTCATCCCTCCCGTCACCACTGACAACCCCCTTCCTTCCTCTC
CGTCCTTTTCTGTCTCCTCCCCCCAAAGGATCGTTACTTCGAGCTGGGCC
CCGCACCTGACTATAACCAGCTGGCTTGGGTGGACGCCAAGGGGGAAGCC
GCCCGGGACAAGGTAACTCTTCCTCCCTCCCTCTCCCCTCCCTCCCTCTC
CCCTCCCTCCCTCTCCCGTGCTCTACTGTGCCTCTGTGCTCCAAAGCACC
CATACTCGTCTTCCTTTTCCGAACTCTTTCATCATCCCTCCCTCCCTCCC
TTCCATCCACCCATCCATCCTCGTCCCCCTCCCTTCTAACGATCGCCCCC
CACAGGCCGAGGTACCCTTCAGTGAGCAGGGTCTGACCACATACCTCGTC
ATGGAGGAGCGGGGGTGGCTCAAGCCGAAGGAGGGCGGGAAGGAGGGAGG
GGGGTGGGGCAAGAAGAGGAAAGGAGTGAAACACGCGCGGACCATCATGC
GGTGCCTGGGGCGGCAACACGGCCTCATCGGTGGGAAGGGAGGAAAGGAG
GGAGGGAGGGAGGGAGGGGAAGACGCAGACTCATGTGTGCCCCCACTTCG
TAATGCCGACAGGACGGAACGTGAAGGAGATGGAGGCCGTGGACCTGCTG
CTGGACGAACTGCAGGTACGTCATCCATTCTGTTCCCTCGCTTTCTCCAA
CCCCTCCCCATCCACCCACCAGTCCGTCCTTTCCTCCCTTCCCCCTTCCC
TCCCTCCCTCTCTCTCTCTTTCCTCCCTTAGGACTTCAACCTCGCCATCC
ACGCCTTGGTCCACAGCCCCTCTTTCCTCCGGGAGAAGGAGCGTTTTCTC
ACCTCCGTCCTCCCGACCCGCCTCCGGGGCTTTGAGAACTGGCTCCTCAA
CGAGAAGAGGGTCCACAAGAAGAGCACGCCGACCGGTGAGGAGGGAGGAA
GGGAGGGAGGGCGGGCGTGAGGGAGGGAAGGCCGACACATTAATCGATAC
TACATGTTCATGTGCTCTCACATATGCATATATGTATATATCTATATATG
TATATATCCATATCGATTCCGTCACAGGAGGCCTCTGGCTGGTTGGCGGG
CGATTGACAGTCGCAGATTTCGTGATGTAAGTAGCCCTCCTTCCCTTTTT
CCCTCCCTCCCTCCCTCCCTCCTTCCTTCACCCTTTTCACGCTTGTTCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCAGG
TACGACCTTCTCTGCCAAGCCCGCACCCTCTGCCCCAGCGCTCTGACCAC
CCTCCGCGAGCTCCAAGACTTCACCTATCGCTTCGAGTCCCTTCCCGCCA
TCGCGGCCTTCCTCGGATCGGAGGCGTGTCAGCTGTTGCCGCTGTACACG
AGCAGGGCGGCCTTTAACCCGTGAGTGAGAGGGGGGAGGGGGAAGGAAAA
GACAATAAGAGGCGAACATAGGACAGACGGAGCACTGAACAACGACGACG
ACGACGGAGATGACGATAAAGAGGAGGAAAAAGAAGAGGAAGAAGAAGAA
GAGGAAAAAGAAGGAGAAGAAGAAGACGGAGAAGAAGTAGAAGGAAGAAA
AAAAATGTAGTCAGAAAAAATGAAGAAGAGGGAAAATGAGGAGGATGAGG
AGGAGGAGGTGGAGAAGGTGGAATGATGGAGAGTATCTATCCATGTGCGT
GTTACTACTACAACGACTACTACGACGAC
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Coding sequence (CDS) from alignment at chr9:1121065..1123643-

>NO09G03860.1 ID=NO09G03860.1|Name=NO09G03860.1|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr9:1121065..1123643- (Nannochloropsis oceanica)
ATGCCAAAGGACGACAATAAGCACACGCTACTACTCGCTGTCGCTGCAAT
CGCTGCCACCGCCGGTGCCCTTGCCGTTCCCCTCTCCTCCCTAATGCGTC
GGGCCTACATCCAGCATCGTCACAAGCGGCACACGCGCTTTACTCTAGGT
TCCTGGCGGGCGCGGGAATATGGACAAGCGGTGCGCTACCTGCTGGCCTA
CCTCGAGCTCCCTTGGCAGGATCGTTACTTCGAGCTGGGCCCCGCACCTG
ACTATAACCAGCTGGCTTGGGTGGACGCCAAGGGGGAAGCCGCCCGGGAC
AAGGCCGAGGTACCCTTCAGTGAGCAGGGTCTGACCACATACCTCGTCAT
GGAGGAGCGGGGGTGGCTCAAGCCGAAGGAGGGCGGGAAGGAGGGAGGGG
GGTGGGGCAAGAAGAGGAAAGGAGTGAAACACGCGCGGACCATCATGCGG
TGCCTGGGGCGGCAACACGGCCTCATCGGACGGAACGTGAAGGAGATGGA
GGCCGTGGACCTGCTGCTGGACGAACTGCAGGACTTCAACCTCGCCATCC
ACGCCTTGGTCCACAGCCCCTCTTTCCTCCGGGAGAAGGAGCGTTTTCTC
ACCTCCGTCCTCCCGACCCGCCTCCGGGGCTTTGAGAACTGGCTCCTCAA
CGAGAAGAGGGTCCACAAGAAGAGCACGCCGACCGGAGGCCTCTGGCTGG
TTGGCGGGCGATTGACAGTCGCAGATTTCGTGATGTACGACCTTCTCTGC
CAAGCCCGCACCCTCTGCCCCAGCGCTCTGACCACCCTCCGCGAGCTCCA
AGACTTCACCTATCGCTTCGAGTCCCTTCCCGCCATCGCGGCCTTCCTCG
GATCGGAGGCGTGTCAGCTGTTGCCGCTGTACACGAGCAGGGCGGCCTTT
AACCCGTGA
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Synonyms
Publications