NO09G03780.1, NO09G03780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03780.1
Unique NameNO09G03780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1708
Alignment locationchr9:1084375..1086082 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1084375..1086082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G03780.1 vs.
Match: XP_002292952.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED89413.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 143.7 bits (361), Expect = 1.100e-30
Identity = 92/248 (37.10%), Postives = 131/248 (52.82%), Query Frame = 0
Query:  103 IPPVIPAEAQAACLESWTTANEAGTER--SRFDEDLLIYHKYFADRPGDAAPG-FFLELGGFDGLTETNTRFFEACLGWSGLLIEASPLSFEKLKANAPRRPNSDLLNVAPSCEKFEFVNLLKQANTGISLHESVYEE---EGQLSWQIKAQCGPLSFYLRELGVTKIDFLSLDVEAFEYYVLRTIDFKALDVKVLLVEVSNRFYDSNTEKFVKLKSQVLEV---LASNGFVEDTSINVKSSKVFLKQ 342
            IP    A +   C+E W    E  T+R  S   ED+ I+  +F        P   +LE+G  DG+ E+N+RF++ CLGWSGLL+E  P ++ K   N   RPN+  L VAPSC        L  +   +S  +  Y     EG++   ++  CGPLS+YL  L +  IDF SLDVE  E  +L+T+DF+ + + V++VEV NR  D       K+K QV +V   L   G+V   S+ V  S V+L Q
Sbjct:  102 IPNETSATSVEGCVEEWKEEREKWTDRGMSANQEDMTIFQAFFNKPEFFNNPSRTYLEIGAHDGVRESNSRFYDVCLGWSGLLVEPHPDNYAK---NTKLRPNAHHLGVAPSC--------LGNSTGIVSFSQHTYTSAMVEGEVGSLLEIHCGPLSYYLDALDIRHIDFWSLDVEGSELALLKTVDFERVHIDVIIVEVENRLTDD-----PKMKQQVEDVRVLLREKGYVNIQSVFVYMSDVWLHQ 333          
The following BLAST results are available for this feature:
BLAST of NO09G03780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002292952.11.100e-3037.10predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03780NO09G03780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03780.1NO09G03780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03780.1.cds1NO09G03780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03780.1 ID=NO09G03780.1|Name=NO09G03780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp
ACAGACACATCCATCGTCATTGTGCAAACGCGTCGCTTACACGGTTAGAG
GTACAGCATCGGATCATCCGACAGCGTGGCCAGCTTTTTTTCGCTGTGGC
CGTGAGTGAGGATCGACGCATCTGCACCTGTAACTGTCTCTGCGGCCCCC
AATCACGCTGCCATCAGCATCCCCTGCCTGAACGCGAAATCAGGGAATGA
GGAAAACTCTTTCTGCGCCTTGGCGCATGACCACAAAAGCGGCGTCCAGG
TCACGGCCATCCCTCATTTTTGCCATGATGCTCAGTTTTGGCCTTGCCTA
CCATTATTTTGGGCCAGAATATGGCAGCGGTCACAGCATGATTGCGGCAA
TTTTCTCAACACCAACCACGGTGCTTGCGGCCGACGCTTCCCCCCCGAGA
CCCCAAGGCTTTCGCAGTGTTAACGAAATACACTGCAACGATGCAGCGAA
GGAGAATGCTTGCCAAGGGGCCTTCGAGTACGTGCCTCGTCTTGCCGGCG
CTATTCCACCTGTAATCCCCGCCGAGGCGCAGGCAGCTTGCTTGGAAAGC
TGGACGACGGCAAACGAAGCCGGGACTGAAAGGAGCCGTTTCGATGAGGA
TCTCCTAATTTATCACAAATATTTCGCCGACCGCCCTGGCGATGCTGCAC
CAGGCTTCTTTCTCGAGCTTGGTGGCTTCGACGGGTTGACCGAAACGAAC
ACTCGCTTCTTTGAGGCGTGTTTGGGCTGGTCTGGACTGCTCATCGAGGC
ATCACCGCTCAGCTTCGAAAAGCTGAAGGCGAATGCCCCGAGGCGACCAA
ACAGTGACTTGCTGAACGTTGCCCCGTCCTGCGAAAAATTTGAGTTTGTG
AACCTTCTCAAGCAAGCTAATACAGGTATATCTTTGCATGAGTCCGTGTA
CGAAGAAGAAGGCCAATTGTCATGGCAAATCAAGGCGCAATGCGGGCCAC
TGAGCTTTTACTTGCGGGAGTTGGGCGTGACCAAGATTGACTTTTTGAGT
TTGGACGTGGAGGCATTTGAATATTATGTGCTGCGCACCATTGATTTTAA
GGCTCTCGACGTAAAAGTGTTGCTGGTAGAAGTGTCCAATCGCTTTTACG
ACTCCAACACGGAGAAATTCGTCAAGCTGAAGTCGCAGGTCCTGGAGGTG
TTGGCCAGCAATGGCTTCGTGGAAGACACGAGCATTAACGTGAAATCGAG
CAAGGTATTTTTGAAACAGGGTGACCTATAGAAAATGATTTCAATGGCCC
AAATAGGAGTCGTGCAGAGCAAGTACTGGCGTGTCTCGGGTTTTCCTCCT
TCTCTTTTTATCCCCTTCTAAAGGATAGCCACGGAGATGTTGTCGTGAAT
CAGCCAGGAAACCGAACAAGGATGATATACACACGTACATGTGCGTGAGC
GATGTCCCATTGATTGGATCATGCGCCCGGCGGGCGTACTGTGGGCCGTG
AATTTATAAAAGACGATGATTACGTGGCCAAGGGTATGTGATTGAGTGCC
TGTTGCACGTGCAGACGTTAGATGTCTACTCTTCTGCACATTCTACGTGT
TTCCATTTATAGACTTGCATGAATCTACGTTCGCGAGTTGTGTTGAATTT
GCCTGTGGAATGTCTTATTATGGCTGCATGCGAGCTTGACTTCGGCGGAA
ACTACCGAGTCAAACCTCGAACCTTGAAAGTAGATTAACAACAAAGTAGC
TGTCGAGA
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protein sequence of NO09G03780.1

>NO09G03780.1-protein ID=NO09G03780.1-protein|Name=NO09G03780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MRKTLSAPWRMTTKAASRSRPSLIFAMMLSFGLAYHYFGPEYGSGHSMIA
AIFSTPTTVLAADASPPRPQGFRSVNEIHCNDAAKENACQGAFEYVPRLA
GAIPPVIPAEAQAACLESWTTANEAGTERSRFDEDLLIYHKYFADRPGDA
APGFFLELGGFDGLTETNTRFFEACLGWSGLLIEASPLSFEKLKANAPRR
PNSDLLNVAPSCEKFEFVNLLKQANTGISLHESVYEEEGQLSWQIKAQCG
PLSFYLRELGVTKIDFLSLDVEAFEYYVLRTIDFKALDVKVLLVEVSNRF
YDSNTEKFVKLKSQVLEVLASNGFVEDTSINVKSSKVFLKQGDL*
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mRNA from alignment at chr9:1084375..1086082-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03780.1 ID=NO09G03780.1|Name=NO09G03780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp|location=Sequence derived from alignment at chr9:1084375..1086082- (Nannochloropsis oceanica)
ACAGACACATCCATCGTCATTGTGCAAACGCGTCGCTTACACGGTTAGAG GTACAGCATCGGATCATCCGACAGCGTGGCCAGCTTTTTTTCGCTGTGGC CGTGAGTGAGGATCGACGCATCTGCACCTGTAACTGTCTCTGCGGCCCCC AATCACGCTGCCATCAGCATCCCCTGCCTGAACGCGAAATCAGGGAATGA GGAAAACTCTTTCTGCGCCTTGGCGCATGACCACAAAAGCGGCGTCCAGG TCACGGCCATCCCTCATTTTTGCCATGATGCTCAGTTTTGGCCTTGCCTA CCATTATTTTGGGCCAGAATATGGCAGCGGTCACAGCATGATTGCGGCAA TTTTCTCAACACCAACCACGGTGCTTGCGGCCGACGCTTCCCCCCCGAGA CCCCAAGGCTTTCGCAGTGTTAACGAAATACACTGCAACGATGCAGCGAA GGAGAATGCTTGCCAAGGGGCCTTCGAGTACGTGCCTCGTCTTGCCGGCG CTATTCCACCTGTAATCCCCGCCGAGGCGCAGGCAGCTTGCTTGGAAAGC TGGACGACGGCAAACGAAGCCGGGACTGAAAGGAGCCGTTTCGATGAGGA TCTCCTAATTTATCACAAATATTTCGCCGACCGCCCTGGCGATGCTGCAC CAGGCTTCTTTCTCGAGCTTGGTGGCTTCGACGGGTTGACCGAAACGAAC ACTCGCTTCTTTGAGGCGTGTTTGGGCTGGTCTGGACTGCTCATCGAGGC ATCACCGCTCAGCTTCGAAAAGCTGAAGGCGAATGCCCCGAGGCGACCAA ACAGTGACTTGCTGAACGTTGCCCCGTCCTGCGAAAAATTTGAGTTTGTG AACCTTCTCAAGCAAGCTAATACAGGTATATCTTTGCATGAGTCCGTGTA CGAAGAAGAAGGCCAATTGTCATGGCAAATCAAGGCGCAATGCGGGCCAC TGAGCTTTTACTTGCGGGAGTTGGGCGTGACCAAGATTGACTTTTTGAGT TTGGACGTGGAGGCATTTGAATATTATGTGCTGCGCACCATTGATTTTAA GGCTCTCGACGTAAAAGTGTTGCTGGTAGAAGTGTCCAATCGCTTTTACG ACTCCAACACGGAGAAATTCGTCAAGCTGAAGTCGCAGGTCCTGGAGGTG TTGGCCAGCAATGGCTTCGTGGAAGACACGAGCATTAACGTGAAATCGAG CAAGGTATTTTTGAAACAGGGTGACCTATAGAAAATGATTTCAATGGCCC AAATAGGAGTCGTGCAGAGCAAGTACTGGCGTGTCTCGGGTTTTCCTCCT TCTCTTTTTATCCCCTTCTAAAGGATAGCCACGGAGATGTTGTCGTGAAT CAGCCAGGAAACCGAACAAGGATGATATACACACGTACATGTGCGTGAGC GATGTCCCATTGATTGGATCATGCGCCCGGCGGGCGTACTGTGGGCCGTG AATTTATAAAAGACGATGATTACGTGGCCAAGGGTATGTGATTGAGTGCC TGTTGCACGTGCAGACGTTAGATGTCTACTCTTCTGCACATTCTACGTGT TTCCATTTATAGACTTGCATGAATCTACGTTCGCGAGTTGTGTTGAATTT GCCTGTGGAATGTCTTATTATGGCTGCATGCGAGCTTGACTTCGGCGGAA ACTACCGAGTCAAACCTCGAACCTTGAAAGTAGATTAACAACAAAGTAGC TGTCGAGA
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Coding sequence (CDS) from alignment at chr9:1084375..1086082-

>NO09G03780.1 ID=NO09G03780.1|Name=NO09G03780.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr9:1084375..1086082- (Nannochloropsis oceanica)
ATGAGGAAAACTCTTTCTGCGCCTTGGCGCATGACCACAAAAGCGGCGTC
CAGGTCACGGCCATCCCTCATTTTTGCCATGATGCTCAGTTTTGGCCTTG
CCTACCATTATTTTGGGCCAGAATATGGCAGCGGTCACAGCATGATTGCG
GCAATTTTCTCAACACCAACCACGGTGCTTGCGGCCGACGCTTCCCCCCC
GAGACCCCAAGGCTTTCGCAGTGTTAACGAAATACACTGCAACGATGCAG
CGAAGGAGAATGCTTGCCAAGGGGCCTTCGAGTACGTGCCTCGTCTTGCC
GGCGCTATTCCACCTGTAATCCCCGCCGAGGCGCAGGCAGCTTGCTTGGA
AAGCTGGACGACGGCAAACGAAGCCGGGACTGAAAGGAGCCGTTTCGATG
AGGATCTCCTAATTTATCACAAATATTTCGCCGACCGCCCTGGCGATGCT
GCACCAGGCTTCTTTCTCGAGCTTGGTGGCTTCGACGGGTTGACCGAAAC
GAACACTCGCTTCTTTGAGGCGTGTTTGGGCTGGTCTGGACTGCTCATCG
AGGCATCACCGCTCAGCTTCGAAAAGCTGAAGGCGAATGCCCCGAGGCGA
CCAAACAGTGACTTGCTGAACGTTGCCCCGTCCTGCGAAAAATTTGAGTT
TGTGAACCTTCTCAAGCAAGCTAATACAGGTATATCTTTGCATGAGTCCG
TGTACGAAGAAGAAGGCCAATTGTCATGGCAAATCAAGGCGCAATGCGGG
CCACTGAGCTTTTACTTGCGGGAGTTGGGCGTGACCAAGATTGACTTTTT
GAGTTTGGACGTGGAGGCATTTGAATATTATGTGCTGCGCACCATTGATT
TTAAGGCTCTCGACGTAAAAGTGTTGCTGGTAGAAGTGTCCAATCGCTTT
TACGACTCCAACACGGAGAAATTCGTCAAGCTGAAGTCGCAGGTCCTGGA
GGTGTTGGCCAGCAATGGCTTCGTGGAAGACACGAGCATTAACGTGAAAT
CGAGCAAGGTATTTTTGAAACAGGGTGACCTATAG
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Synonyms
Publications