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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:1084375..1086082 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03780.1 vs.
Match: XP_002292952.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED89413.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 143.7 bits (361), Expect = 1.100e-30 Identity = 92/248 (37.10%), Postives = 131/248 (52.82%), Query Frame = 0
Query: 103 IPPVIPAEAQAACLESWTTANEAGTER--SRFDEDLLIYHKYFADRPGDAAPG-FFLELGGFDGLTETNTRFFEACLGWSGLLIEASPLSFEKLKANAPRRPNSDLLNVAPSCEKFEFVNLLKQANTGISLHESVYEE---EGQLSWQIKAQCGPLSFYLRELGVTKIDFLSLDVEAFEYYVLRTIDFKALDVKVLLVEVSNRFYDSNTEKFVKLKSQVLEV---LASNGFVEDTSINVKSSKVFLKQ 342
IP A + C+E W E T+R S ED+ I+ +F P +LE+G DG+ E+N+RF++ CLGWSGLL+E P ++ K N RPN+ L VAPSC L + +S + Y EG++ ++ CGPLS+YL L + IDF SLDVE E +L+T+DF+ + + V++VEV NR D K+K QV +V L G+V S+ V S V+L Q
Sbjct: 102 IPNETSATSVEGCVEEWKEEREKWTDRGMSANQEDMTIFQAFFNKPEFFNNPSRTYLEIGAHDGVRESNSRFYDVCLGWSGLLVEPHPDNYAK---NTKLRPNAHHLGVAPSC--------LGNSTGIVSFSQHTYTSAMVEGEVGSLLEIHCGPLSYYLDALDIRHIDFWSLDVEGSELALLKTVDFERVHIDVIIVEVENRLTDD-----PKMKQQVEDVRVLLREKGYVNIQSVFVYMSDVWLHQ 333
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03780.1 ID=NO09G03780.1|Name=NO09G03780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp ACAGACACATCCATCGTCATTGTGCAAACGCGTCGCTTACACGGTTAGAG GTACAGCATCGGATCATCCGACAGCGTGGCCAGCTTTTTTTCGCTGTGGC CGTGAGTGAGGATCGACGCATCTGCACCTGTAACTGTCTCTGCGGCCCCC AATCACGCTGCCATCAGCATCCCCTGCCTGAACGCGAAATCAGGGAATGA GGAAAACTCTTTCTGCGCCTTGGCGCATGACCACAAAAGCGGCGTCCAGG TCACGGCCATCCCTCATTTTTGCCATGATGCTCAGTTTTGGCCTTGCCTA CCATTATTTTGGGCCAGAATATGGCAGCGGTCACAGCATGATTGCGGCAA TTTTCTCAACACCAACCACGGTGCTTGCGGCCGACGCTTCCCCCCCGAGA CCCCAAGGCTTTCGCAGTGTTAACGAAATACACTGCAACGATGCAGCGAA GGAGAATGCTTGCCAAGGGGCCTTCGAGTACGTGCCTCGTCTTGCCGGCG CTATTCCACCTGTAATCCCCGCCGAGGCGCAGGCAGCTTGCTTGGAAAGC TGGACGACGGCAAACGAAGCCGGGACTGAAAGGAGCCGTTTCGATGAGGA TCTCCTAATTTATCACAAATATTTCGCCGACCGCCCTGGCGATGCTGCAC CAGGCTTCTTTCTCGAGCTTGGTGGCTTCGACGGGTTGACCGAAACGAAC ACTCGCTTCTTTGAGGCGTGTTTGGGCTGGTCTGGACTGCTCATCGAGGC ATCACCGCTCAGCTTCGAAAAGCTGAAGGCGAATGCCCCGAGGCGACCAA ACAGTGACTTGCTGAACGTTGCCCCGTCCTGCGAAAAATTTGAGTTTGTG AACCTTCTCAAGCAAGCTAATACAGGTATATCTTTGCATGAGTCCGTGTA CGAAGAAGAAGGCCAATTGTCATGGCAAATCAAGGCGCAATGCGGGCCAC TGAGCTTTTACTTGCGGGAGTTGGGCGTGACCAAGATTGACTTTTTGAGT TTGGACGTGGAGGCATTTGAATATTATGTGCTGCGCACCATTGATTTTAA GGCTCTCGACGTAAAAGTGTTGCTGGTAGAAGTGTCCAATCGCTTTTACG ACTCCAACACGGAGAAATTCGTCAAGCTGAAGTCGCAGGTCCTGGAGGTG TTGGCCAGCAATGGCTTCGTGGAAGACACGAGCATTAACGTGAAATCGAG CAAGGTATTTTTGAAACAGGGTGACCTATAGAAAATGATTTCAATGGCCC AAATAGGAGTCGTGCAGAGCAAGTACTGGCGTGTCTCGGGTTTTCCTCCT TCTCTTTTTATCCCCTTCTAAAGGATAGCCACGGAGATGTTGTCGTGAAT CAGCCAGGAAACCGAACAAGGATGATATACACACGTACATGTGCGTGAGC GATGTCCCATTGATTGGATCATGCGCCCGGCGGGCGTACTGTGGGCCGTG AATTTATAAAAGACGATGATTACGTGGCCAAGGGTATGTGATTGAGTGCC TGTTGCACGTGCAGACGTTAGATGTCTACTCTTCTGCACATTCTACGTGT TTCCATTTATAGACTTGCATGAATCTACGTTCGCGAGTTGTGTTGAATTT GCCTGTGGAATGTCTTATTATGGCTGCATGCGAGCTTGACTTCGGCGGAA ACTACCGAGTCAAACCTCGAACCTTGAAAGTAGATTAACAACAAAGTAGC TGTCGAGA back to topprotein sequence of NO09G03780.1 >NO09G03780.1-protein ID=NO09G03780.1-protein|Name=NO09G03780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp MRKTLSAPWRMTTKAASRSRPSLIFAMMLSFGLAYHYFGPEYGSGHSMIA AIFSTPTTVLAADASPPRPQGFRSVNEIHCNDAAKENACQGAFEYVPRLA GAIPPVIPAEAQAACLESWTTANEAGTERSRFDEDLLIYHKYFADRPGDA APGFFLELGGFDGLTETNTRFFEACLGWSGLLIEASPLSFEKLKANAPRR PNSDLLNVAPSCEKFEFVNLLKQANTGISLHESVYEEEGQLSWQIKAQCG PLSFYLRELGVTKIDFLSLDVEAFEYYVLRTIDFKALDVKVLLVEVSNRF YDSNTEKFVKLKSQVLEVLASNGFVEDTSINVKSSKVFLKQGDL* back to topmRNA from alignment at chr9:1084375..1086082- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03780.1 ID=NO09G03780.1|Name=NO09G03780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp|location=Sequence derived from alignment at chr9:1084375..1086082- (Nannochloropsis oceanica) ACAGACACATCCATCGTCATTGTGCAAACGCGTCGCTTACACGGTTAGAG
GTACAGCATCGGATCATCCGACAGCGTGGCCAGCTTTTTTTCGCTGTGGC
CGTGAGTGAGGATCGACGCATCTGCACCTGTAACTGTCTCTGCGGCCCCC
AATCACGCTGCCATCAGCATCCCCTGCCTGAACGCGAAATCAGGGAATGA
GGAAAACTCTTTCTGCGCCTTGGCGCATGACCACAAAAGCGGCGTCCAGG
TCACGGCCATCCCTCATTTTTGCCATGATGCTCAGTTTTGGCCTTGCCTA
CCATTATTTTGGGCCAGAATATGGCAGCGGTCACAGCATGATTGCGGCAA
TTTTCTCAACACCAACCACGGTGCTTGCGGCCGACGCTTCCCCCCCGAGA
CCCCAAGGCTTTCGCAGTGTTAACGAAATACACTGCAACGATGCAGCGAA
GGAGAATGCTTGCCAAGGGGCCTTCGAGTACGTGCCTCGTCTTGCCGGCG
CTATTCCACCTGTAATCCCCGCCGAGGCGCAGGCAGCTTGCTTGGAAAGC
TGGACGACGGCAAACGAAGCCGGGACTGAAAGGAGCCGTTTCGATGAGGA
TCTCCTAATTTATCACAAATATTTCGCCGACCGCCCTGGCGATGCTGCAC
CAGGCTTCTTTCTCGAGCTTGGTGGCTTCGACGGGTTGACCGAAACGAAC
ACTCGCTTCTTTGAGGCGTGTTTGGGCTGGTCTGGACTGCTCATCGAGGC
ATCACCGCTCAGCTTCGAAAAGCTGAAGGCGAATGCCCCGAGGCGACCAA
ACAGTGACTTGCTGAACGTTGCCCCGTCCTGCGAAAAATTTGAGTTTGTG
AACCTTCTCAAGCAAGCTAATACAGGTATATCTTTGCATGAGTCCGTGTA
CGAAGAAGAAGGCCAATTGTCATGGCAAATCAAGGCGCAATGCGGGCCAC
TGAGCTTTTACTTGCGGGAGTTGGGCGTGACCAAGATTGACTTTTTGAGT
TTGGACGTGGAGGCATTTGAATATTATGTGCTGCGCACCATTGATTTTAA
GGCTCTCGACGTAAAAGTGTTGCTGGTAGAAGTGTCCAATCGCTTTTACG
ACTCCAACACGGAGAAATTCGTCAAGCTGAAGTCGCAGGTCCTGGAGGTG
TTGGCCAGCAATGGCTTCGTGGAAGACACGAGCATTAACGTGAAATCGAG
CAAGGTATTTTTGAAACAGGGTGACCTATAGAAAATGATTTCAATGGCCC
AAATAGGAGTCGTGCAGAGCAAGTACTGGCGTGTCTCGGGTTTTCCTCCT
TCTCTTTTTATCCCCTTCTAAAGGATAGCCACGGAGATGTTGTCGTGAAT
CAGCCAGGAAACCGAACAAGGATGATATACACACGTACATGTGCGTGAGC
GATGTCCCATTGATTGGATCATGCGCCCGGCGGGCGTACTGTGGGCCGTG
AATTTATAAAAGACGATGATTACGTGGCCAAGGGTATGTGATTGAGTGCC
TGTTGCACGTGCAGACGTTAGATGTCTACTCTTCTGCACATTCTACGTGT
TTCCATTTATAGACTTGCATGAATCTACGTTCGCGAGTTGTGTTGAATTT
GCCTGTGGAATGTCTTATTATGGCTGCATGCGAGCTTGACTTCGGCGGAA
ACTACCGAGTCAAACCTCGAACCTTGAAAGTAGATTAACAACAAAGTAGC
TGTCGAGA back to topCoding sequence (CDS) from alignment at chr9:1084375..1086082- >NO09G03780.1 ID=NO09G03780.1|Name=NO09G03780.1|organism=Nannochloropsis oceanica|type=CDS|length=1035bp|location=Sequence derived from alignment at chr9:1084375..1086082- (Nannochloropsis oceanica) ATGAGGAAAACTCTTTCTGCGCCTTGGCGCATGACCACAAAAGCGGCGTC CAGGTCACGGCCATCCCTCATTTTTGCCATGATGCTCAGTTTTGGCCTTG CCTACCATTATTTTGGGCCAGAATATGGCAGCGGTCACAGCATGATTGCG GCAATTTTCTCAACACCAACCACGGTGCTTGCGGCCGACGCTTCCCCCCC GAGACCCCAAGGCTTTCGCAGTGTTAACGAAATACACTGCAACGATGCAG CGAAGGAGAATGCTTGCCAAGGGGCCTTCGAGTACGTGCCTCGTCTTGCC GGCGCTATTCCACCTGTAATCCCCGCCGAGGCGCAGGCAGCTTGCTTGGA AAGCTGGACGACGGCAAACGAAGCCGGGACTGAAAGGAGCCGTTTCGATG AGGATCTCCTAATTTATCACAAATATTTCGCCGACCGCCCTGGCGATGCT GCACCAGGCTTCTTTCTCGAGCTTGGTGGCTTCGACGGGTTGACCGAAAC GAACACTCGCTTCTTTGAGGCGTGTTTGGGCTGGTCTGGACTGCTCATCG AGGCATCACCGCTCAGCTTCGAAAAGCTGAAGGCGAATGCCCCGAGGCGA CCAAACAGTGACTTGCTGAACGTTGCCCCGTCCTGCGAAAAATTTGAGTT TGTGAACCTTCTCAAGCAAGCTAATACAGGTATATCTTTGCATGAGTCCG TGTACGAAGAAGAAGGCCAATTGTCATGGCAAATCAAGGCGCAATGCGGG CCACTGAGCTTTTACTTGCGGGAGTTGGGCGTGACCAAGATTGACTTTTT GAGTTTGGACGTGGAGGCATTTGAATATTATGTGCTGCGCACCATTGATT TTAAGGCTCTCGACGTAAAAGTGTTGCTGGTAGAAGTGTCCAATCGCTTT TACGACTCCAACACGGAGAAATTCGTCAAGCTGAAGTCGCAGGTCCTGGA GGTGTTGGCCAGCAATGGCTTCGTGGAAGACACGAGCATTAACGTGAAAT CGAGCAAGGTATTTTTGAAACAGGGTGACCTATAG back to top
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