NO09G03770.1, NO09G03770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03770.1
Unique NameNO09G03770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1636
Alignment locationchr9:1082721..1084356 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1082721..1084356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO09G03770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03770NO09G03770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03770.1NO09G03770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03770.1.cds1NO09G03770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03770.1 ID=NO09G03770.1|Name=NO09G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
ACCCCCTCCCTCCCTCCCTCCTTTCCGACCCCATCTATCCCGTCCCCATC
GCCTTCCGCATCCTGGAACGCCCTCCCTCCTCCTCCTCCTCCTCGATCTC
CCTCTCCTCCTCCTCCTCCTCCCCCTCCTCTCCTTGCTTCGGCCCCTTGG
CCGTTGCATTCTTCCCCTCCAATTGGGCGGTGGGCACGTTCCGATCTTAC
GTTGCTCAGAAATGGCTCGGCGACCAAGCGAGGCGGGTGCTCGTTTTCTT
TCTGTACGAGAAGGAGTGGCGAAAGAGGAAGAGGAGGAGGGGGTTGAAGG
GGGGGGGAAGGAGGGGAAGGAGAAGGAGGTGATGATGCTGCCACAAGAGG
GGAAGGGAGAGAAAGAACAGGAAGAGGACGAGGAGGACGAGGACGAGGAC
GAGGAGGACGTGGAAGAGGAGATCGAGTTGTACCCGCGATTACACTACAT
ATTGTGGGATTATGATTATTTGAAGCTGCCGCAGATGCTGGGAATGGTCA
TCGAGGCGAGACCGCCCGTGTTGTACATCGAGTTGAACAACGAGCTGACG
CGGGAGGAGGAGGAGTGCTGGTACCTTCACAACAAGTCCAAGGGAGGGGG
GGAAGATGCCTTGAGGGTGGAGAGGTGGGCGGAGAAGGTGGCAAGGCAGG
GAGGGAAGGAAGGGGACGACATGAGGATGCAGGAGGCAGCGACGTCGGTT
GCGCGTCGGCGGCCGTTGGAGCAAGGCCTGATGATTCGTACCAAACAAGA
GCGGGCAGAGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACAACAACAGCAGCAGCAGCGGCAGCAGCAGAAGAAAAAGGAAGT
GTGATGATTCCTGCAGCTGATCAGGAGGTCTCGCAGGATGGAGATAGAGA
GAGGGAAGCAGTAGGCGGGGAGGAGAGGCAAGCAATAGCGGGAAGATCGA
TCCAGGTGACCGGGGACAACGAAAGGCGAAGGCCGACGGTGTTGATGGAC
CAAGAAAAGGAAGAGAAGGGAGATGAAGGAAAGGAGGGGCTTGATGATGA
CATGCACGGGCTCGCTTGGAATCAGCGTGTGGACTATACGGTGCATGGTG
GTGCGAGTGCTGGGCGTTCAGATGACTGGCTGCTGGGGTTTCCGCAGTCC
AAGGCAGGGGAGGAGCAGGAGGAGCACGACGTGGATGACGACGATGATAG
CATGGCGGGTGCGTCGGGGGGAGGAAGAGAGACGGATATTTCGGCGGGGG
AGGAGTGCTTGGAGAACGGGGAGGGGGAGGATGGGATGGATGAGGAGGGC
GGGGAGGTTGAGGAGGTTTATTCCCAGAATGACGCGGAGGCGGATTGGCG
AAGACGCCATAACAAAAGAGAGGGGGAGGAGGAGAAGGAGGATGGGATGC
AGATATAGCAAATCAGAAACATCAGATGGAAGAATGGGCAGAAGACGCGC
GGAGTCAGGAGGGAGGGAGACTGACCAGGAAAACTGGAGAAGGTCGACAT
CAGAAAGTGCACATAAAAACCATGCAACATACGCACCAGTCAAATTTTCG
CGCGAAATCTCATGTTTGCCATCTCAAAGAACTCAGAAGAACGAGAGTGA
ATGAAGACGAATCAAAAAAAGAAATTAATATCCCAG
back to top

protein sequence of NO09G03770.1

>NO09G03770.1-protein ID=NO09G03770.1-protein|Name=NO09G03770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MARRPSEAGARFLSVREGVAKEEEEEGVEGGGKEGKEKEVMMLPQEGKGE
KEQEEDEEDEDEDEEDVEEEIELYPRLHYILWDYDYLKLPQMLGMVIEAR
PPVLYIELNNELTREEEECWYLHNKSKGGGEDALRVERWAEKVARQGGKE
GDDMRMQEAATSVARRRPLEQGLMIRTKQERAEAAAAAAAAAAAAATATT
TAAAAAAAEEKGSVMIPAADQEVSQDGDREREAVGGEERQAIAGRSIQVT
GDNERRRPTVLMDQEKEEKGDEGKEGLDDDMHGLAWNQRVDYTVHGGASA
GRSDDWLLGFPQSKAGEEQEEHDVDDDDDSMAGASGGGRETDISAGEECL
ENGEGEDGMDEEGGEVEEVYSQNDAEADWRRRHNKREGEEEKEDGMQI*
back to top

mRNA from alignment at chr9:1082721..1084356+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03770.1 ID=NO09G03770.1|Name=NO09G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp|location=Sequence derived from alignment at chr9:1082721..1084356+ (Nannochloropsis oceanica)
ACCCCCTCCCTCCCTCCCTCCTTTCCGACCCCATCTATCCCGTCCCCATC
GCCTTCCGCATCCTGGAACGCCCTCCCTCCTCCTCCTCCTCCTCGATCTC
CCTCTCCTCCTCCTCCTCCTCCCCCTCCTCTCCTTGCTTCGGCCCCTTGG
CCGTTGCATTCTTCCCCTCCAATTGGGCGGTGGGCACGTTCCGATCTTAC
GTTGCTCAGAAATGGCTCGGCGACCAAGCGAGGCGGGTGCTCGTTTTCTT
TCTGTACGAGAAGGAGTGGCGAAAGAGGAAGAGGAGGAGGGGGTTGAAGG
GGGGGGGAAGGAGGGGAAGGAGAAGGAGGTGATGATGCTGCCACAAGAGG
GGAAGGGAGAGAAAGAACAGGAAGAGGACGAGGAGGACGAGGACGAGGAC
GAGGAGGACGTGGAAGAGGAGATCGAGTTGTACCCGCGATTACACTACAT
ATTGTGGGATTATGATTATTTGAAGCTGCCGCAGATGCTGGGAATGGTCA
TCGAGGCGAGACCGCCCGTGTTGTACATCGAGTTGAACAACGAGCTGACG
CGGGAGGAGGAGGAGTGCTGGTACCTTCACAACAAGTCCAAGGGAGGGGG
GGAAGATGCCTTGAGGGTGGAGAGGTGGGCGGAGAAGGTGGCAAGGCAGG
GAGGGAAGGAAGGGGACGACATGAGGATGCAGGAGGCAGCGACGTCGGTT
GCGCGTCGGCGGCCGTTGGAGCAAGGCCTGATGATTCGTACCAAACAAGA
GCGGGCAGAGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACAACAACAGCAGCAGCAGCGGCAGCAGCAGAAGAAAAAGGAAGT
GTGATGATTCCTGCAGCTGATCAGGAGGTCTCGCAGGATGGAGATAGAGA
GAGGGAAGCAGTAGGCGGGGAGGAGAGGCAAGCAATAGCGGGAAGATCGA
TCCAGGTGACCGGGGACAACGAAAGGCGAAGGCCGACGGTGTTGATGGAC
CAAGAAAAGGAAGAGAAGGGAGATGAAGGAAAGGAGGGGCTTGATGATGA
CATGCACGGGCTCGCTTGGAATCAGCGTGTGGACTATACGGTGCATGGTG
GTGCGAGTGCTGGGCGTTCAGATGACTGGCTGCTGGGGTTTCCGCAGTCC
AAGGCAGGGGAGGAGCAGGAGGAGCACGACGTGGATGACGACGATGATAG
CATGGCGGGTGCGTCGGGGGGAGGAAGAGAGACGGATATTTCGGCGGGGG
AGGAGTGCTTGGAGAACGGGGAGGGGGAGGATGGGATGGATGAGGAGGGC
GGGGAGGTTGAGGAGGTTTATTCCCAGAATGACGCGGAGGCGGATTGGCG
AAGACGCCATAACAAAAGAGAGGGGGAGGAGGAGAAGGAGGATGGGATGC
AGATATAGCAAATCAGAAACATCAGATGGAAGAATGGGCAGAAGACGCGC
GGAGTCAGGAGGGAGGGAGACTGACCAGGAAAACTGGAGAAGGTCGACAT
CAGAAAGTGCACATAAAAACCATGCAACATACGCACCAGTCAAATTTTCG
CGCGAAATCTCATGTTTGCCATCTCAAAGAACTCAGAAGAACGAGAGTGA
ATGAAGACGAATCAAAAAAAGAAATTAATATCCCAG
back to top

Coding sequence (CDS) from alignment at chr9:1082721..1084356+

>NO09G03770.1 ID=NO09G03770.1|Name=NO09G03770.1|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at chr9:1082721..1084356+ (Nannochloropsis oceanica)
ATGGCTCGGCGACCAAGCGAGGCGGGTGCTCGTTTTCTTTCTGTACGAGA
AGGAGTGGCGAAAGAGGAAGAGGAGGAGGGGGTTGAAGGGGGGGGGAAGG
AGGGGAAGGAGAAGGAGGTGATGATGCTGCCACAAGAGGGGAAGGGAGAG
AAAGAACAGGAAGAGGACGAGGAGGACGAGGACGAGGACGAGGAGGACGT
GGAAGAGGAGATCGAGTTGTACCCGCGATTACACTACATATTGTGGGATT
ATGATTATTTGAAGCTGCCGCAGATGCTGGGAATGGTCATCGAGGCGAGA
CCGCCCGTGTTGTACATCGAGTTGAACAACGAGCTGACGCGGGAGGAGGA
GGAGTGCTGGTACCTTCACAACAAGTCCAAGGGAGGGGGGGAAGATGCCT
TGAGGGTGGAGAGGTGGGCGGAGAAGGTGGCAAGGCAGGGAGGGAAGGAA
GGGGACGACATGAGGATGCAGGAGGCAGCGACGTCGGTTGCGCGTCGGCG
GCCGTTGGAGCAAGGCCTGATGATTCGTACCAAACAAGAGCGGGCAGAGG
CGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACA
ACAGCAGCAGCAGCGGCAGCAGCAGAAGAAAAAGGAAGTGTGATGATTCC
TGCAGCTGATCAGGAGGTCTCGCAGGATGGAGATAGAGAGAGGGAAGCAG
TAGGCGGGGAGGAGAGGCAAGCAATAGCGGGAAGATCGATCCAGGTGACC
GGGGACAACGAAAGGCGAAGGCCGACGGTGTTGATGGACCAAGAAAAGGA
AGAGAAGGGAGATGAAGGAAAGGAGGGGCTTGATGATGACATGCACGGGC
TCGCTTGGAATCAGCGTGTGGACTATACGGTGCATGGTGGTGCGAGTGCT
GGGCGTTCAGATGACTGGCTGCTGGGGTTTCCGCAGTCCAAGGCAGGGGA
GGAGCAGGAGGAGCACGACGTGGATGACGACGATGATAGCATGGCGGGTG
CGTCGGGGGGAGGAAGAGAGACGGATATTTCGGCGGGGGAGGAGTGCTTG
GAGAACGGGGAGGGGGAGGATGGGATGGATGAGGAGGGCGGGGAGGTTGA
GGAGGTTTATTCCCAGAATGACGCGGAGGCGGATTGGCGAAGACGCCATA
ACAAAAGAGAGGGGGAGGAGGAGAAGGAGGATGGGATGCAGATATAG
back to top
Synonyms
Publications