NO09G03670.4, NO09G03670.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03670.4
Unique NameNO09G03670.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1899
Alignment locationchr9:1057282..1059429 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1057282..1059429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03670.4 vs.
Match: XP_005852568.1 (hypothetical protein NGA_0702900 [Nannochloropsis gaditana CCMP526]; EKU23264.1 hypothetical protein NGA_0702900 [Nannochloropsis gaditana CCMP526]; EWM27438.1 hypothetical protein Naga_100482g4 [Nannochloropsis gaditana])

HSP 1 Score: 146.0 bits (367), Expect = 1.500e-31
Identity = 92/185 (49.73%), Postives = 113/185 (61.08%), Query Frame = 0 
Query:   50 LISYYDPIEDRCHVNSNNGVRTEVAGRCGDNMKDIIPTCRGHPDAYMPQPQVPTTPAKPLPVPPKTPVEVKPDGEIPGSPTPLLPPPPQKPTSERP-VRAPTGKQGTQNP----PRWPPLSGKDSGEPVADVVEEEKER----RRRGLKGFALFGVLIGTAICVAILSVLGVGYYAYRTRQKTMR 226
            + +YYDPI DRCHV+S NGVRTEVAGRC ++M+ IIPTC GH DAY P PQ  + PA      P TPVEV   G I   P+ L P PP +P+  +P VRAP  K   + P    P+ PP       +P     E + ++    +  G+KGFALF VLIG AI  A+LSV GVGYYAY TR+K  R
Sbjct:   69 MCAYYDPIHDRCHVDSKNGVRTEVAGRCSESMRGIIPTCSGHLDAYSP-PQPDSMPA------PATPVEVDATGNIEQPPS-LPPSPPSEPSPPKPPVRAPPEKDAARVPSSPFPKIPPFWKNRDRDPTKGPEEGDHDQGADPKPGGMKGFALFAVLIGAAILAAVLSVTGVGYYAYHTRRKAWR 245
The following BLAST results are available for this feature:
BLAST of NO09G03670.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852568.11.500e-3149.73hypothetical protein NGA_0702900 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03670NO09G03670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03670.4NO09G03670.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03670.4.cds1NO09G03670.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03670.4.cds2NO09G03670.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03670.4 ID=NO09G03670.4|Name=NO09G03670.4|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp
CCGACCGTTTAGAGGGTTCGTGTCCTTCTTGCGTCCTTCATATACCGCCA
CCTATACGACCTCCCATCCTCCCATTCCCATCACAACACGTAAAATCTAA
GGATAACGATCTGCACCTTCTCCACGATGGCGCCGTCGCAGTGGCGGAGG
GAAAATTTTCGCGGGCCCAGCGCCAACACCACCATGCCTCTTCTCCTTCT
GCTTCCCTCTCTCCTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGCCT
TGGACTTCCAGGACATCCGCGACGGCTTCTCAGGGGCATCGGATGACATT
AGAAAGGGCATGAATGGGCTGCGGTTGCCGGGCATGTGCGCGTACGTCCG
TCTTTTTCTCTGCATGTTTTCCCTCTTCGCCTTCTCACGTTTCTCCTTCC
CTGGTCATGGTTCCATGAGTCCATGTCTCATGTCCCACTTTCTCTCAAAT
TTCATGTATGGGTATGCCCATATATCAATACATTTTATAAGCACAGAAAT
ATATGTACGGATTCTGGCATCCAGCATGTGTGAATATACGTGTACCTTCC
CCTGTCCTTTTGTCATCCTTCGAGCCCTTTCATCCACTCCCTTTCATCTC
ATGCTCAGTCACTACCTATCAACCCTACCTTCCCTCCTTGTACTCCTGCC
TCATCAGCTACTACGACCCCATCGAGGATCGTTGCCACGTCAACAGCAAC
AATGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGA
CATCATCCCCACCTGTCGCGGACACCCTGACGCCTATATGCCACAACCCC
AAGTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCT
GTGGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTT
GCCGCCGCCTCCGCAGAAACCGACGTCGGAACGTCCTGTCCGAGCACCCA
CCGGCAAGCAGGGCACTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGA
AAAGACAGCGGAGAGCCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAG
AAGGAGGAGAGGCTTGAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAA
CGGCCATCTGTGTGGCGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCG
TATCGCACCAGGCAGAAGACTATGCGACTGCGAGGTAGGTCGAGGGGGGC
GATGAGCGGTTGAGAGGAGAAGGCGGCAGCCGCATGCGTGTGTGAATGGG
CGGCACTTCTTTTTTCTCAAAATTTTGGGAGTGCATTACGCGACATGCGA
GGCTGGACCCGCGTTTAATGTCAACGTTGCGGGCTAACATGTCATTGGCG
GAAGACTGGTTGCGAACACATTCGTGACGCAGATGGATGATCCTTCCTTT
GTCCTTCTCTCTCCTCTCATCCCTACCCCCTTCGTTTCTCTATTCCCCGC
TCCCATATCACATCTCTTTATTCCCCTTAACAGAGCAAGTCCTTACAGCT
CGTGAGGCTCGGGCGCATGTCACATTCGCCGGCATATCTCCCTCGTTGCC
ATCAGTCCCGACGCCTCGCTCCTTAGGATTGTAAATTAGACCGAGGAATG
TAAATAATTGAGTGAGAGGACAGTGATGCAAGAGGGAAAAAACTAACTAA
AACGACCAGAGAAAATAAAGAGGTAGAGCACTTACTGTCGCATTCTCTTT
CCTTTGCCGCCGCTTGCTTCCCCTTGTGCTGTTCTTCGAGCTGTACCGCC
ACATCGTCCAGACCGGCAGTGTACTATGATAAGGGACGTGATCTTGATCC
CACCCTCTGTGCTGGCGCCCTGCTTCACGGTATTATCTCGATTCATGTAA
GGTGGGTAGTGGAGAAAAAGGCAGCAAGGGAGCATATATGCAAGTTATA
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protein sequence of NO09G03670.4

>NO09G03670.4-protein ID=NO09G03670.4-protein|Name=NO09G03670.4|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MYGFWHPACVNIRVPSPVLLSSFEPFHPLPFISCSVTTYQPYLPSLYSCL
ISYYDPIEDRCHVNSNNGVRTEVAGRCGDNMKDIIPTCRGHPDAYMPQPQ
VPTTPAKPLPVPPKTPVEVKPDGEIPGSPTPLLPPPPQKPTSERPVRAPT
GKQGTQNPPRWPPLSGKDSGEPVADVVEEEKERRRRGLKGFALFGVLIGT
AICVAILSVLGVGYYAYRTRQKTMRLRGRSRGAMSG*
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mRNA from alignment at chr9:1057282..1059429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03670.4 ID=NO09G03670.4|Name=NO09G03670.4|organism=Nannochloropsis oceanica|type=mRNA|length=2148bp|location=Sequence derived from alignment at chr9:1057282..1059429- (Nannochloropsis oceanica)
CCGACCGTTTAGAGGGTTCGTGTCCTTCTTGCGTCCTTCATATACCGCCA
CCTATACGACCTCCCATCCTCCCATTCCCATCACAACACGTAAAATCTAA
GGATAACGATCTGCACCTTCTCCACGATGGCGCCGTCGCAGTGGCGGAGG
GAAAATTTTCGCGGGCCCAGCGCCAACACCACCATGCCTCTTCTCCTTCT
GCTTCCCTCTCTCCTTCTCCTTGTCTGCCTGCCCTCCCCCCTGCACGCCT
TGGACTTCCAGGACATCCGCGACGGCTTCTCAGGGGCATCGGATGACATT
AGAAAGGGCATGAATGGGCTGCGGTTGCCGGGCATGTGCGCGTACGTCCG
TCTTTTTCTCTGCATGTTTTCCCTCTTCGCCTTCTCACGTTTCTCCTTCC
CTGGTCATGGTTCCATGAGTCCATGTCTCATGTCCCACTTTCTCTCAAAT
TTCATGTATGGGTATGCCCATATATCAATACATTTTATAAGCACAGAAAT
ATATGTACGGATTCTGGCATCCAGCATGTGTGAATATACGTGTACCTTCC
CCTGTCCTTTTGTCATCCTTCGAGCCCTTTCATCCACTCCCTTTCATCTC
ATGCTCAGTCACTACCTATCAACCCTACCTTCCCTCCTTGTACTCCTGCC
TCATCAGCTACTACGACCCCATCGAGGATCGTTGCCACGTCAACAGCAAC
AATGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGA
CATCATCCCCACCTGTCGCGGACACCCTGACGCCTATATGCCACAACCCC
AAGTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCT
GTGGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTT
GCCGCCGCCTCCGCAGGTACGCCCCTGTTGATGTGTCTCATGTGATAAGC
CTTTGCCGCTATTCCCATTAATGCATCTTTTTGATAAAATTAAATCCTTT
TCCCCTTTCTCGTTCAACGAATCTGTTCCTTTTGGTTGTCCCTTGGTGTT
GTCTGCCTTGAATATATTTATTTACCTTCCTTTCCCCTACCCCCTTAAAT
CTGCCACCTCCTTTACCCTCTTCACATCTAACCCACCCCCGACCATTATC
CCTTCACGGACACAGAAACCGACGTCGGAACGTCCTGTCCGAGCACCCAC
CGGCAAGCAGGGCACTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGAA
AAGACAGCGGAGAGCCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAGA
AGGAGGAGAGGCTTGAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAAC
GGCCATCTGTGTGGCGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCGT
ATCGCACCAGGCAGAAGACTATGCGACTGCGAGGTAGGTCGAGGGGGGCG
ATGAGCGGTTGAGAGGAGAAGGCGGCAGCCGCATGCGTGTGTGAATGGGC
GGCACTTCTTTTTTCTCAAAATTTTGGGAGTGCATTACGCGACATGCGAG
GCTGGACCCGCGTTTAATGTCAACGTTGCGGGCTAACATGTCATTGGCGG
AAGACTGGTTGCGAACACATTCGTGACGCAGATGGATGATCCTTCCTTTG
TCCTTCTCTCTCCTCTCATCCCTACCCCCTTCGTTTCTCTATTCCCCGCT
CCCATATCACATCTCTTTATTCCCCTTAACAGAGCAAGTCCTTACAGCTC
GTGAGGCTCGGGCGCATGTCACATTCGCCGGCATATCTCCCTCGTTGCCA
TCAGTCCCGACGCCTCGCTCCTTAGGATTGTAAATTAGACCGAGGAATGT
AAATAATTGAGTGAGAGGACAGTGATGCAAGAGGGAAAAAACTAACTAAA
ACGACCAGAGAAAATAAAGAGGTAGAGCACTTACTGTCGCATTCTCTTTC
CTTTGCCGCCGCTTGCTTCCCCTTGTGCTGTTCTTCGAGCTGTACCGCCA
CATCGTCCAGACCGGCAGTGTACTATGATAAGGGACGTGATCTTGATCCC
ACCCTCTGTGCTGGCGCCCTGCTTCACGGTATTATCTCGATTCATGTAAG
GTGGGTAGTGGAGAAAAAGGCAGCAAGGGAGCATATATGCAAGTTATA
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Coding sequence (CDS) from alignment at chr9:1057282..1059429-

>NO09G03670.4 ID=NO09G03670.4|Name=NO09G03670.4|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr9:1057282..1059429- (Nannochloropsis oceanica)
ATGTACGGATTCTGGCATCCAGCATGTGTGAATATACGTGTACCTTCCCC
TGTCCTTTTGTCATCCTTCGAGCCCTTTCATCCACTCCCTTTCATCTCAT
GCTCAGTCACTACCTATCAACCCTACCTTCCCTCCTTGTACTCCTGCCTC
ATCAGCTACTACGACCCCATCGAGGATCGTTGCCACGTCAACAGCAACAA
TGGCGTCCGCACTGAGGTGGCTGGCAGGTGTGGCGACAACATGAAAGACA
TCATCCCCACCTGTCGCGGACACCCTGACGCCTATATGCCACAACCCCAA
GTGCCTACTACGCCCGCAAAGCCTTTGCCGGTACCACCTAAGACGCCTGT
GGAAGTGAAGCCAGATGGAGAGATCCCGGGCTCTCCAACGCCGTTGTTGC
CGCCGCCTCCGCAGAAACCGACGTCGGAACGTCCTGTCCGAGCACCCACC
GGCAAGCAGGGCACTCAGAACCCTCCTCGCTGGCCTCCCTTGTCAGGAAA
AGACAGCGGAGAGCCCGTGGCGGACGTGGTAGAGGAGGAGAAGGAGAGAA
GGAGGAGAGGCTTGAAAGGATTCGCTCTCTTCGGCGTTCTCATTGGAACG
GCCATCTGTGTGGCGATTCTCTCCGTGTTGGGCGTGGGGTATTACGCGTA
TCGCACCAGGCAGAAGACTATGCGACTGCGAGGTAGGTCGAGGGGGGCGA
TGAGCGGTTGA
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Synonyms
Publications