NO09G03660.3, NO09G03660.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03660.3
Unique NameNO09G03660.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1622
Alignment locationchr9:1054771..1057281 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1054771..1057281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03660.3 vs.
Match: XP_007514497.1 (hypothetical protein Bathy02g05280 [Bathycoccus prasinos]; CCO14737.1 hypothetical protein Bathy02g05280 [Bathycoccus prasinos])

HSP 1 Score: 122.5 bits (306), Expect = 2.100e-24
Identity = 82/238 (34.45%), Postives = 122/238 (51.26%), Query Frame = 0 
Query:   42 AEGGHVWRESEFSSYLITGAVGGIFGSLSLACASAGGHVPRHFVALLGVSQSLALSLGMAALHVVMNKEEVAYCQRERRREEWETENYPEGERREMVAIYTSRGGMSPPDATLVIDTLLQYPRFFIDNMVVWELGLLPFTKDFSVLRGTVALFSSLFAGIIPLLPFCFRPLSSSLPSHLPVYLSAAFAFLLLFGLGVTKARLLDQPRASTVGVLFGMGTAVAAI-----SLGIGAGLG 275
            AE  H     ++   L+ G + GI  + ++  AS GG +    V L+G +   A  L M     + +K E  Y   E++RE+WE +N+PEGE+REMV IY  R GM   DAT++I+T+ +Y   F+D M+V ELGL+P  ++ S + G V   +    G +PL+P+    L+ S         + A     LF LG  KA+  +Q +  + G    M   +AAI     S GI  GLG
Sbjct:   60 AEEAHAGAGGKYVKSLVFGGLDGIITTFAVVAASKGGSLSTEIVLLMGFANLFADGLSMGFGDFLSSKAEHEYATTEKKREKWEFDNFPEGEKREMVEIYMQR-GMKEEDATIIIETMSKYEDIFVDVMMVEELGLMPPEEESSFMNGLVTFVAFSLFGFVPLMPYLIGRLAKSGSEDALFVSACALTAFTLFSLGAAKAKFTNQAQVKS-GFFMLMNGGLAAICAYLVSWGISEGLG 295
The following BLAST results are available for this feature:
BLAST of NO09G03660.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_007514497.12.100e-2434.45hypothetical protein Bathy02g05280 [Bathycoccus pr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03660NO09G03660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03660.3NO09G03660.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03660.3.cds1NO09G03660.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.3.cds2NO09G03660.3.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.3.cds3NO09G03660.3.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.3.cds4NO09G03660.3.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.3.cds5NO09G03660.3.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03660.3.cds6NO09G03660.3.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03660.3 ID=NO09G03660.3|Name=NO09G03660.3|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp
ATAGGAAATAAATAGAGATCACCAGTCAAGGGGTTGTCAAGGCGCAGCAT
CGCTTTCTGTTGCCTTTTTTGAGTCCTCTCAAACATGGCCGTGGGCAATG
GATCAACAACAGCAGAACTCGAGAGCGGTCTATCGTCGGGCGGTGGGGCA
GCGGAAACTCAGCAACACCACTCGCAGCCCTTGCAGCAGGAGGAAGATAT
CAAAGACAAGGACCCTGAAACGCTGATAAAAATGGTGAGAGGGCCGCCAG
AATGGGGGAGGGAGGGAGTGATGGCATGGGGAGGGGAGGAAGAGAGGGGA
AAGTGGGGGGATCAAGAGAGTGCATGAACTGGTGAATGAAAAAATAGGTG
GCTGCTCCTAGATTTCAGCTCGTTTCGATTTTTCCTACAGTCACACGGAG
TCTGCCTACGTGGACATAGGATGTGAAAGTTGACGTGATGTGTCTCGTAT
CCCATTTCCCCTTCCCTTTGCCTGCCCGGCAACCCCCCTCCCACTCACGC
ACTCCTTCCGCAATCCACAGGCGTTTGCTGCCCAGAATGCCAAGCTTTCA
AAGGAAGCCCACAACGCCAAGGCGGCGGCATTGTCCATGAGCGGCCCTCC
ATCCTCCTCCCCCACCATGCCCACGGGTGTGCTTCCTTCCACTTCACTTT
CCTCCTCTCCCTCTGCTTTCGCCCCTGGGAAGTCTGCCCTGCCTTCTACG
CCAATGCCCGCTGAAGGCGGGCATGTTTGGAGAGAGTCCGAATTCTCATC
TTACTTGATTACAGGAGCCGTCGGAGGCATTTTCGGATCTCTGTCGTTGG
CGTGCGCGAGTGCAGGCGGTCACGTCCCTCGTCATTTTGTCGCCCTGCTG
GGGGTGTCGCAGTCCCTGGCACTTTCCCTGGGCATGGCCGCGCTCCACGT
GGTGATGAACAAGGAGGAGGTGGCATACTGCCAACGAGAGCGACGGCGAG
AGGAGTGGGAGACGGAAAACTACCCGGAAGGCGAAAGGCGTGAGATGGTC
GCAATCTACACAAGCAGGGGAGGCATGTCCCCTCCCGACGCCACACTAGT
CATTGACACCCTCCTCCAGTACCCTCGGTTCTTCATCGACAACATGGTGG
TGTGGGAGCTTGGGCTGCTGCCTTTCACGAAAGATTTCAGTGTTCTGCGC
GGGACTGTCGCTCTATTCTCCTCCCTTTTTGCCGGCATCATCCCCTTGCT
GCCCTTCTGCTTTCGCCCTCTCTCCTCCTCTTTGCCTTCCCATCTCCCCG
TCTATCTTTCCGCCGCCTTTGCCTTCCTCCTCCTCTTTGGGCTGGGCGTG
ACCAAGGCCCGTCTGCTTGACCAGCCGCGTGCTTCCACCGTCGGTGTTTT
ATTCGGAATGGGGACTGCTGTAGCTGCTATTAGTCTCGGTATCGGTGCCG
GGCTCGGCGCAGTGTTGGTTTGAGTGAAAGTGTGAAAGAAGGAGCGAAAG
GAGGGATGGAGGGACAGAGCAACAGCGATGTGTGTATAGAACAGAATGAG
GTACATCACTGTGAGGAGATGAAGGCGATGAGAGAGGAGTGAAATGACCA
CTGAATGATTACAAAGGAGAAAGAAATAAATGCTAATAAGTGATGAACAG
CGAAACGACGAAGAAAACAGGA
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protein sequence of NO09G03660.3

>NO09G03660.3-protein ID=NO09G03660.3-protein|Name=NO09G03660.3|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MSGPPSSSPTMPTGVLPSTSLSSSPSAFAPGKSALPSTPMPAEGGHVWRE
SEFSSYLITGAVGGIFGSLSLACASAGGHVPRHFVALLGVSQSLALSLGM
AALHVVMNKEEVAYCQRERRREEWETENYPEGERREMVAIYTSRGGMSPP
DATLVIDTLLQYPRFFIDNMVVWELGLLPFTKDFSVLRGTVALFSSLFAG
IIPLLPFCFRPLSSSLPSHLPVYLSAAFAFLLLFGLGVTKARLLDQPRAS
TVGVLFGMGTAVAAISLGIGAGLGAVLV*
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mRNA from alignment at chr9:1054771..1057281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03660.3 ID=NO09G03660.3|Name=NO09G03660.3|organism=Nannochloropsis oceanica|type=mRNA|length=2511bp|location=Sequence derived from alignment at chr9:1054771..1057281+ (Nannochloropsis oceanica)
ATAGGAAATAAATAGAGATCACCAGTCAAGGGGTTGTCAAGGCGCAGCAT
CGCTTTCTGTTGCCTTTTTTGAGTCCTCTCAAACATGGCCGTGGGCAATG
GATCAACAACAGCAGAACTCGAGAGCGGTCTATCGTCGGGCGGTGGGGCA
GCGGAAACTCAGCAACACCACTCGCAGCCCTTGCAGCAGGAGGAAGATAT
CAAAGACAAGGACCCTGAAACGCTGATAAAAATGGTGAGAGGGCCGCCAG
AATGGGGGAGGGAGGGAGTGATGGCATGGGGAGGGGAGGAAGAGAGGGGA
AAGTGGGGGGATCAAGAGAGTGCATGAACTGGTGAATGAAAAAATAGGTG
GCTGCTCCTAGATTTCAGCTCGTTTCGATTTTTCCTACAGTCACACGGAG
TCTGCCTACGTGGACATAGGATGTGAAAGTTGACGTGATGTGTCTCGTAT
CCCATTTCCCCTTCCCTTTGCCTGCCCGGCAACCCCCCTCCCACTCACGC
ACTCCTTCCGCAATCCACAGGCGTTTGCTGCCCAGAATGCCAAGCTTTCA
AAGGAAGCCCACAACGCCAAGGCGGCGGCATTGTCCATGAGGTAGGCAAG
GAGGGGAACGGGGGAGGAAGGTGGGAAGGAGGGAGGGAAAGAGGTAGAGA
GGAAGGACTGGAACTGAGAGATATACTGGAGGGGATGGTACGTTGTTGAC
CATAGAAAAAGGTAGCAGCGTTTGTCGCCATAGCAGACGCAGCAGCCACA
GCAGCAGCAGGCGCAGGAGCTTGTATTTGTTCTCACTTTCCTCTTCACTC
TATCCCTTCACAGCGGCCCTCCATCCTCCTCCCCCACCATGCCCACGGGT
GTGCTTCCTTCCACTTCACTTTCCTCCTCTCCCTCTGCTTTCGCCCCTGG
GAAGTCTGCCCTGCCTTCTACGCCAATGCCCGCTGAAGGCGGGCATGTTT
GGAGAGAGTCCGAATTCTCATCTTACTTGATTACAGGAGCCGTCGGAGGT
GAGGAAGGAGTGAGGCAAGGAGGGAAGGAGGCAAGGAGGGAAGGAGGGAG
GGAAGACGGGAGGAAAAAAAGGTAGGGGGTGCAGGCGGAGGAAATGATCC
CTCTCAAAATTCTAATTATAGCGTCAATTGACTTCTCTCACCTTAAATCA
TAGCCTTGACTAGTTATAATTAAATTCCCCCAAAAATCTAACCATACCCC
TCTTTCCCCCCCCCCTTTTCAATCAGGCATTTTCGGATCTCTGTCGTTGG
CGTGCGCGAGTGCAGGCGGTCACGTCCCTCGTCATTTTGTCGCCCTGCTG
GGGGTGTCGCAGTCCCTGGCACTTTCCCTGGGCATGGCCGCGCTCCACGT
GGTGATGAACAAGGAGGAGGTGGCATACTGCCAACGGTGAGGGAGGAAGA
GTGAGGGAGAGAGAGGGGGAGGGAAAGTAAAATGATGTACTGGATGTGAG
CACGGGGGGAATAATTTTGTCAGTCACACGACCCATTAATCTCCAACCAC
TCCCACGCCCGCACAGAGAGCGACGGCGAGAGGAGTGGGAGACGGAAAAC
TACCCGGAAGGTAAGAAAAAGAAGACATCATGGAATCAAGGAGCGAAGGA
GGGAGGGAGGGAGGGTAAGGCAAGGGGGAGAATAGCGTTAAAAGTTTTGT
AGCTGTACCTCATTTCTGCCTCCTCCCTTCCCCCTTCTCCCTCCCTCCGG
CCCTTCATCCCCTCCTGCAGGCGAAAGGCGTGAGATGGTCGCAATCTACA
CAAGCAGGGGAGGCATGTCCCCTCCCGACGCCACACTAGTCATTGACACC
CTCCTCCAGTACCCTCGGTTCTTCATCGACAACATGGTGGTGTGGGAGCT
TGGGCTGCTGCCTTTCACGAAAGATTTCAGTGTTCTGCGCGGTTAGGAGA
GAGGGAGGGAAGGGAGGAAGGCATTAAGGGAGGGGGAAAAGGAGGGAATG
GGCATGTACTTCGCATCGCCGCTTCAACCGTTGACTTTGAACACTCTTCT
CTCCACTTCCCTCCTATCCTCCATGCTACGCGCGAAACAGGGACTGTCGC
TCTATTCTCCTCCCTTTTTGCCGGCATCATCCCCTTGCTGCCCTTCTGCT
TTCGCCCTCTCTCCTCCTCTTTGCCTTCCCATCTCCCCGTCTATCTTTCC
GCCGCCTTTGCCTTCCTCCTCCTCTTTGGGCTGGGCGTGACCAAGGCCCG
TCTGCTTGACCAGCCGCGTGCTTCCACCGTCGGTGTTTTATTCGGAATGG
GGACTGCTGTAGCTGCTATTAGTCTCGGTATCGGTGCCGGGCTCGGCGCA
GTGTTGGTTTGAGTGAAAGTGTGAAAGAAGGAGCGAAAGGAGGGATGGAG
GGACAGAGCAACAGCGATGTGTGTATAGAACAGAATGAGGTACATCACTG
TGAGGAGATGAAGGCGATGAGAGAGGAGTGAAATGACCACTGAATGATTA
CAAAGGAGAAAGAAATAAATGCTAATAAGTGATGAACAGCGAAACGACGA
AGAAAACAGGA
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Coding sequence (CDS) from alignment at chr9:1054771..1057281+

>NO09G03660.3 ID=NO09G03660.3|Name=NO09G03660.3|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at chr9:1054771..1057281+ (Nannochloropsis oceanica)
ATGAGCGGCCCTCCATCCTCCTCCCCCACCATGCCCACGGGTGTGCTTCC
TTCCACTTCACTTTCCTCCTCTCCCTCTGCTTTCGCCCCTGGGAAGTCTG
CCCTGCCTTCTACGCCAATGCCCGCTGAAGGCGGGCATGTTTGGAGAGAG
TCCGAATTCTCATCTTACTTGATTACAGGAGCCGTCGGAGGCATTTTCGG
ATCTCTGTCGTTGGCGTGCGCGAGTGCAGGCGGTCACGTCCCTCGTCATT
TTGTCGCCCTGCTGGGGGTGTCGCAGTCCCTGGCACTTTCCCTGGGCATG
GCCGCGCTCCACGTGGTGATGAACAAGGAGGAGGTGGCATACTGCCAACG
AGAGCGACGGCGAGAGGAGTGGGAGACGGAAAACTACCCGGAAGGCGAAA
GGCGTGAGATGGTCGCAATCTACACAAGCAGGGGAGGCATGTCCCCTCCC
GACGCCACACTAGTCATTGACACCCTCCTCCAGTACCCTCGGTTCTTCAT
CGACAACATGGTGGTGTGGGAGCTTGGGCTGCTGCCTTTCACGAAAGATT
TCAGTGTTCTGCGCGGGACTGTCGCTCTATTCTCCTCCCTTTTTGCCGGC
ATCATCCCCTTGCTGCCCTTCTGCTTTCGCCCTCTCTCCTCCTCTTTGCC
TTCCCATCTCCCCGTCTATCTTTCCGCCGCCTTTGCCTTCCTCCTCCTCT
TTGGGCTGGGCGTGACCAAGGCCCGTCTGCTTGACCAGCCGCGTGCTTCC
ACCGTCGGTGTTTTATTCGGAATGGGGACTGCTGTAGCTGCTATTAGTCT
CGGTATCGGTGCCGGGCTCGGCGCAGTGTTGGTTTGA
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Synonyms
Publications