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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:1051806..1054796 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03650.1 vs.
Match: XP_019424700.1 (PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Lupinus angustifolius]; XP_019424701.1 PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Lupinus angustifolius]) HSP 1 Score: 187.2 bits (474), Expect = 1.300e-43 Identity = 147/447 (32.89%), Postives = 202/447 (45.19%), Query Frame = 0
Query: 76 KGEGGRMKALEFYSGIGGWSEALELAMRQLGRGKEDVQVSASFEINLMANDVYAAQVKDPPRPRPTARLIESLTVNDLEKQAVALWMLSPPCQPYTRNNKTEKRDKADSRSASFLHLCALLQSMASPPGYIALENVEGFETSECCALFLSVLRDRGYEVWHGVLSPALFRWPNERPRYYALARRGRGREGGREGGRPGGDGGGGGGGGGGEGGRRSPAAGAEEEGTLRVFPPVWRGKTLP-------PF--LASASSSSTSPVLPPFSLKEEGEEAVEGEGEGETRQIREY-----LEHDRGREGLWSTYAVPPSLLAKPSAWCFDIVSPTSRRSSCFTKSYFKFIRGTGSILYD---KTRGKKGEEEEEILIQDPSKRRFEEDMGWQSRFAGALRYFTPMEVARLMHFPSSFAFPAHVSDKKCYELLGNSLHVGVATELLVWLLRE 506
K +GG + LEFYSGIGG +L A + QV +FEIN +ANDVY R RP I+SLT DL+K A W+LSPPCQPYTR ++D D+R+ SFL + L+ + PP + +ENV GFETS+ A + +L + +LSP F P RPRY+ LA+R P++ E VW + + PF +A+ S L F + E +E + G + L +D + L Y VP SL+ + + D+V S+R CFTKSY+++++GTGS+L K R K +E+ LRYFTP EVA L FP F FP H+S ++ Y LLGNSL + V LL +L E
Sbjct: 3 KSDGGGRRVLEFYSGIGGMRYSLMKA-------GVNAQVMEAFEINDIANDVYQFNF----RHRPYQGNIQSLTAADLDKYAADAWLLSPPCQPYTRQGL--QKDTGDARAFSFLQILELIPFLLQPPSMLFVENVVGFETSDTHAKLIEILGKTNFITQEFILSPLQFGIPYSRPRYFCLAKR-------------------------------KPSSFVNE---------VWNSQLIQSPRPLFEPFDTVANDGDLSQEDGLKLFQSCQPIENFLELKNTGNDIDVESVTSVTGLSNDVECDSL-DQYYVPSSLVERWGS-AMDVVYLDSKRCCCFTKSYYRYVKGTGSLLATVEPKKRDKASLKEQR------------------------LRYFTPREVANLHSFPEDFEFPEHISLRQRYALLGNSLSIAVVAPLLNYLFTE 370
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03650.1 ID=NO09G03650.1|Name=NO09G03650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp ACTGGTGATCTCTATTTATTTCCTATGTGGACGTGGGGGGAGGACATGGA TGGATGAAATGGATGAGAGGGTTCGTGGATAGATACGGGCGACCAAGAAG GAGCCGAGCATTTCGCTCGAGCCGTCCACAACGCTTTTTGCCGTTCCTCT CGACACACTACCACGCACACACAAACACACACCATAGATGCCCAGTGGCT GCCTACTCCTGACGCTATTCTCCTTGTTGCTGCTATTCCTCCTACCTCCG CGATCGTCTGGTTTTTTTGTGCCACTCCCTCCAAATTCCCACCCTTTGAC CCCTGCTTGTATACGCTCCTTGGCATACGCCTCCTTCACGAGGAGGTGCC TTTCTCACGACAGTCGTATGGACGGCACCACCACTACAATTTCGAGGAGA AGAAGGAGGGATAAAGGGGAGGGAGGGAGGATGAAAGCTTTGGAGTTCTA TAGTGGTATTGGCGGCTGGAGCGAGGCCTTGGAATTGGCAATGCGACAAC TAGGAAGGGGAAAGGAAGACGTGCAGGTATCTGCCTCGTTCGAGATCAAC TTGATGGCCAATGATGTCTATGCCGCGCAAGTCAAGGATCCCCCTCGTCC ACGCCCTACCGCTCGTCTGATCGAGTCCCTGACAGTCAATGATTTGGAAA AGCAGGCCGTTGCGTTGTGGATGCTCTCTCCGCCATGCCAGCCCTACACG CGCAATAACAAGACGGAAAAACGAGACAAGGCCGACTCTCGCTCTGCCTC TTTTCTCCATCTTTGTGCGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTT ACATCGCGTTGGAAAATGTAGAGGGGTTTGAGACGAGCGAATGTTGCGCC CTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGGTATGGCATGGCGT TCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGCCCGCGGTACTACG CCTTGGCAAGGAGGGGAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG CCGGGCGGGGACGGGGGAGGGGGAGGAGGAGGAGGGGGAGGTGAAGGAGG GAGAAGGTCACCGGCTGCAGGTGCTGAGGAGGAGGGGACTTTAAGGGTCT TTCCGCCTGTATGGCGGGGGAAAACCCTCCCTCCCTTCCTTGCCTCCGCT TCCTCTTCCTCGACCTCACCCGTCCTCCCTCCCTTCTCTTTGAAGGAGGA AGGGGAAGAGGCGGTGGAGGGGGAGGGGGAGGGGGAGACGAGGCAGATTC GAGAGTACCTCGAGCATGACCGGGGAAGAGAGGGGTTGTGGAGTACTTAC GCCGTTCCTCCCTCCCTTCTTGCCAAGCCGTCTGCTTGGTGCTTTGACAT TGTCTCGCCCACGAGCCGGCGCTCCTCCTGCTTCACTAAATCGTACTTCA AGTTCATCCGGGGCACTGGCTCCATTCTCTATGACAAGACACGAGGGAAG AAGGGGGAAGAAGAGGAGGAGATTCTGATCCAGGATCCGTCCAAAAGGAG GTTCGAGGAGGACATGGGCTGGCAATCGCGTTTCGCAGGGGCCTTGAGGT ACTTCACTCCAATGGAGGTGGCGCGCCTGATGCACTTCCCATCCTCTTTT GCCTTCCCTGCCCATGTTTCTGACAAGAAATGCTACGAGCTTCTGGGGAA CAGTTTGCATGTGGGAGTGGCCACGGAGCTGTTGGTGTGGTTACTGAGGG AGGACGAGAGGGATGGAGGGATGGAGGGATGGAGGGCTGTAGAGGGGTAG back to topprotein sequence of NO09G03650.1 >NO09G03650.1-protein ID=NO09G03650.1-protein|Name=NO09G03650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp MPSGCLLLTLFSLLLLFLLPPRSSGFFVPLPPNSHPLTPACIRSLAYASF TRRCLSHDSRMDGTTTTISRRRRRDKGEGGRMKALEFYSGIGGWSEALEL AMRQLGRGKEDVQVSASFEINLMANDVYAAQVKDPPRPRPTARLIESLTV NDLEKQAVALWMLSPPCQPYTRNNKTEKRDKADSRSASFLHLCALLQSMA SPPGYIALENVEGFETSECCALFLSVLRDRGYEVWHGVLSPALFRWPNER PRYYALARRGRGREGGREGGRPGGDGGGGGGGGGGEGGRRSPAAGAEEEG TLRVFPPVWRGKTLPPFLASASSSSTSPVLPPFSLKEEGEEAVEGEGEGE TRQIREYLEHDRGREGLWSTYAVPPSLLAKPSAWCFDIVSPTSRRSSCFT KSYFKFIRGTGSILYDKTRGKKGEEEEEILIQDPSKRRFEEDMGWQSRFA GALRYFTPMEVARLMHFPSSFAFPAHVSDKKCYELLGNSLHVGVATELLV WLLREDERDGGMEGWRAVEG* back to topmRNA from alignment at chr9:1051806..1054796- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03650.1 ID=NO09G03650.1|Name=NO09G03650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2991bp|location=Sequence derived from alignment at chr9:1051806..1054796- (Nannochloropsis oceanica) ACTGGTGATCTCTATTTATTTCCTATGTGGACGTGGGGGGAGGACATGGA
TGGATGAAATGGATGAGAGGGTTCGTGGATAGATACGGGCGACCAAGAAG
GAGCCGAGCATTTCGCTCGAGCCGTCCACAACGCTTTTTGCCGTTCCTCT
CGACACACTACCACGCACACACAAACACACACCATAGATGCCCAGTGGCT
GCCTACTCCTGACGCTATTCTCCTTGTTGCTGCTATTCCTCCTACCTCCG
CGATCGTCTGGTTTTTTTGTGCCACTCCCTCCAAATTCCCACCCTTTGAC
CCCTGCTTGTATACGCTCCTTGGCATACGCCTCCTTCACGAGGAGGTGCC
TTTCTCACGACAGTCGTATGGACGGCACCACCACTACAATTTCGAGGAGA
AGAAGGAGGGATAAAGGGGAGGGAGGGAGGATGAAAGCTTTGGAGTTCTA
TAGTGGTATTGGCGGCTGGAGCGAGGCCTTGGAATTGGCAATGCGACAAC
TAGGAAGGGGAAAGGAAGACGTGCAGGTGGGTGGGTGATGAAATGGAGGA
AGGCGGGTAGAGGATTTCGGAAAATGGACCTTTTCGCAGTGATTGTAAGC
AAATATGTCTTCTGTCTTCTGAACACCACGTTTTGGAAGCTTGGCCAACC
CACCCTTCCCTCCCTATCTCTTTCCCCTCCCCCCCCGGGCCCTCACTTCC
AGGTATCTGCCTCGTTCGAGATCAACTTGATGGCCAATGATGTCTATGCC
GCGCAAGGTCACGATAGAAGGGGGGGAAGGGAGGGACAGAGGAGGGGGGC
AGGAGAACAAAAGGATGTCACCCTGGTTAGCGCACAACTCCTCGCTTATC
TACCCTGTATCTCCCCCCCTCCTTCCCTCCCTTCCTCCCCCCCTCCTTCC
TTTGTAGTCAAGGATCCCCCTCGTCCACGCCCTACCGCTCGTCTGATCGA
GTCCCTGACAGTCAATGATTTGGAAAAGCAGGCCGTTGCGTTGTGGATGC
TCTCTCCGCCATGCCAGCCCTACACGCGCAATAACAAGACGGTAGGGAGA
GAGGGAGAGAGGGAGAGAGGGAGGGAGGGGAGGAGGGAGGAAGGAAAGTA
ATGACGTAATTTAAAAAATCCGCTACTTTCTAACACGTTCACATTCCCCT
CATGCACCTCCATTCCCTCCACTCGTTTATTGATACTCCTCTCATGCACC
TCCTTCTCCTCCACTCGTGTGCACTTCAGGAAAAACGAGACAAGGCCGAC
TCTCGCTCTGCCTCTTTTCTCCATCTTTGTGCGCTTTTGCAGTCGATGGC
CTCTCCTCCGGGTTACATCGCGTTGGAAAATGTAGAGGTGAGGGAGGGAG
GGAGGGAGGGAGGGTGGGAGGGAGTGTATAGGGTGGTACTTCAATTCTGG
CCTGGATGTCATCCGTCCTCTTACCCTCCCTGCTTCCCTCCCTCCGCTCC
TCCCTCTTTTTCAGGGGTTTGAGACGAGCGAATGTTGCGCCCTTTTCCTC
TCGGTCCTGCGTGATAGGGGCTATGAGGTATGGCATGGCGTTCTGTCCCC
TGCTCTCTTTAGGTGGCCCAATGAACGCCCGCGGTACTACGCCTTGGCAA
GGAGGGGAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCCGGGCGGG
GACGGGGGAGGGGGAGGAGGAGGAGGGGGAGGTGAAGGAGGGAGAAGGTC
ACCGGCTGCAGGTGCTGAGGAGGAGGGGACTTTAAGGGTCTTTCCGCCTG
TATGGCGGGGGAAAACCCTCCCTCCCTTCCTTGCCTCCGCTTCCTCTTCC
TCGACCTCACCCGTCCTCCCTCCCTTCTCTTTGAAGGAGGAAGGGGAAGA
GGCGGTGGAGGGGGAGGGGGAGGGGGAGACGAGGCAGATTCGAGAGTACC
TCGAGCATGACCGGGGAAGAGAGGGGTTGTGGAGTACTTACGCCGTTCCT
CCCTCCCTTCTTGCCAAGCCGTCTGCTTGGTGCTTTGACATTGTCTCGCC
CACGAGCCGGCGGTACGAGGGGGGGGTCCCAGAGGGAGGGAGGGAAGGAG
GGAGGGATGAGAGGGAATGTGGTGTAGCTACGCCATGTCTCATTTTGTCT
CAATCAAACGACCCAATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTTCCCTTGATTCGTTTGCCCCTCTTTTTGTCATCCACAGTGT
TGGTTCTGATTTTCACCTCTTCCCCTTCCTCCCTCCCTCCCTCCCCCCCC
CTCTTTCAGCTCCTCCTGCTTCACTAAATCGTACTTCAAGTTCATCCGGG
GCACTGGCTCCATTCTCTATGACAAGACACGAGGGAAGAAGGGGGAAGAA
GAGGAGGAGATTCTGATCCAGGTACGTTTCGAAGGGGAGGGAAGGAAGGA
GGGAGTGAAGGAGGGGGTGGCCTCCTGCATGCATTCATTCATTCCTATAT
GTCCGCAGGATCCGTCCAAAAGGAGGTTCGAGGAGGACATGGGCTGGCAA
TCGCGTTTCGCAGGGGCCTTGAGGTAGATAGTGGTGGGAGGGAGAGAGGG
ATGGGCGGGAGGGGAGGAAGCGAGGGACGGAAGGAGACAGGTGGTTTAGC
CGTATCTTTCCTTCAGATCTTCCACGTCCTCTTTCCCTCTCTCCCAACGC
TTTCTTCTATGTATATTAACAGGTACTTCACTCCAATGGAGGTGGCGCGC
CTGATGCACTTCCCATCCTCTTTTGCCTTCCCTGCCCGTACGTTCCTCAC
CCTTTTTCCCTTCCCTCCCTCGCACCCTGATTCCTTCATTCATTCCATCC
TTTCACTCACCCTCCTCCCCTCTCTCCTTCTATCCCTCCCTCCCTTCCTT
GTAGATGTTTCTGACAAGAAATGCTACGAGCTTCTGGGGAACAGTTTGCA
TGTGGGAGTGGCCACGGAGCTGTTGGTGTGGTTACTGAGGGAGGACGAGA
GGGATGGAGGGATGGAGGGATGGAGGGCTGTAGAGGGGTAG back to topCoding sequence (CDS) from alignment at chr9:1051806..1054796- >NO09G03650.1 ID=NO09G03650.1|Name=NO09G03650.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr9:1051806..1054796- (Nannochloropsis oceanica) ATGCCCAGTGGCTGCCTACTCCTGACGCTATTCTCCTTGTTGCTGCTATT CCTCCTACCTCCGCGATCGTCTGGTTTTTTTGTGCCACTCCCTCCAAATT CCCACCCTTTGACCCCTGCTTGTATACGCTCCTTGGCATACGCCTCCTTC ACGAGGAGGTGCCTTTCTCACGACAGTCGTATGGACGGCACCACCACTAC AATTTCGAGGAGAAGAAGGAGGGATAAAGGGGAGGGAGGGAGGATGAAAG CTTTGGAGTTCTATAGTGGTATTGGCGGCTGGAGCGAGGCCTTGGAATTG GCAATGCGACAACTAGGAAGGGGAAAGGAAGACGTGCAGGTATCTGCCTC GTTCGAGATCAACTTGATGGCCAATGATGTCTATGCCGCGCAAGTCAAGG ATCCCCCTCGTCCACGCCCTACCGCTCGTCTGATCGAGTCCCTGACAGTC AATGATTTGGAAAAGCAGGCCGTTGCGTTGTGGATGCTCTCTCCGCCATG CCAGCCCTACACGCGCAATAACAAGACGGAAAAACGAGACAAGGCCGACT CTCGCTCTGCCTCTTTTCTCCATCTTTGTGCGCTTTTGCAGTCGATGGCC TCTCCTCCGGGTTACATCGCGTTGGAAAATGTAGAGGGGTTTGAGACGAG CGAATGTTGCGCCCTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGG TATGGCATGGCGTTCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGC CCGCGGTACTACGCCTTGGCAAGGAGGGGAAGGGGGAGGGAGGGAGGGAG GGAGGGAGGGAGGCCGGGCGGGGACGGGGGAGGGGGAGGAGGAGGAGGGG GAGGTGAAGGAGGGAGAAGGTCACCGGCTGCAGGTGCTGAGGAGGAGGGG ACTTTAAGGGTCTTTCCGCCTGTATGGCGGGGGAAAACCCTCCCTCCCTT CCTTGCCTCCGCTTCCTCTTCCTCGACCTCACCCGTCCTCCCTCCCTTCT CTTTGAAGGAGGAAGGGGAAGAGGCGGTGGAGGGGGAGGGGGAGGGGGAG ACGAGGCAGATTCGAGAGTACCTCGAGCATGACCGGGGAAGAGAGGGGTT GTGGAGTACTTACGCCGTTCCTCCCTCCCTTCTTGCCAAGCCGTCTGCTT GGTGCTTTGACATTGTCTCGCCCACGAGCCGGCGCTCCTCCTGCTTCACT AAATCGTACTTCAAGTTCATCCGGGGCACTGGCTCCATTCTCTATGACAA GACACGAGGGAAGAAGGGGGAAGAAGAGGAGGAGATTCTGATCCAGGATC CGTCCAAAAGGAGGTTCGAGGAGGACATGGGCTGGCAATCGCGTTTCGCA GGGGCCTTGAGGTACTTCACTCCAATGGAGGTGGCGCGCCTGATGCACTT CCCATCCTCTTTTGCCTTCCCTGCCCATGTTTCTGACAAGAAATGCTACG AGCTTCTGGGGAACAGTTTGCATGTGGGAGTGGCCACGGAGCTGTTGGTG TGGTTACTGAGGGAGGACGAGAGGGATGGAGGGATGGAGGGATGGAGGGC TGTAGAGGGGTAG back to top
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