|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr9 | genome | chr9:1051806..1054796 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03650.1 vs.
Match: XP_019424700.1 (PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Lupinus angustifolius]; XP_019424701.1 PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Lupinus angustifolius]) HSP 1 Score: 187.2 bits (474), Expect = 1.300e-43 Identity = 147/447 (32.89%), Postives = 202/447 (45.19%), Query Frame = 0
Query: 76 KGEGGRMKALEFYSGIGGWSEALELAMRQLGRGKEDVQVSASFEINLMANDVYAAQVKDPPRPRPTARLIESLTVNDLEKQAVALWMLSPPCQPYTRNNKTEKRDKADSRSASFLHLCALLQSMASPPGYIALENVEGFETSECCALFLSVLRDRGYEVWHGVLSPALFRWPNERPRYYALARRGRGREGGREGGRPGGDGGGGGGGGGGEGGRRSPAAGAEEEGTLRVFPPVWRGKTLP-------PF--LASASSSSTSPVLPPFSLKEEGEEAVEGEGEGETRQIREY-----LEHDRGREGLWSTYAVPPSLLAKPSAWCFDIVSPTSRRSSCFTKSYFKFIRGTGSILYD---KTRGKKGEEEEEILIQDPSKRRFEEDMGWQSRFAGALRYFTPMEVARLMHFPSSFAFPAHVSDKKCYELLGNSLHVGVATELLVWLLRE 506
K +GG + LEFYSGIGG +L A + QV +FEIN +ANDVY R RP I+SLT DL+K A W+LSPPCQPYTR ++D D+R+ SFL + L+ + PP + +ENV GFETS+ A + +L + +LSP F P RPRY+ LA+R P++ E VW + + PF +A+ S L F + E +E + G + L +D + L Y VP SL+ + + D+V S+R CFTKSY+++++GTGS+L K R K +E+ LRYFTP EVA L FP F FP H+S ++ Y LLGNSL + V LL +L E
Sbjct: 3 KSDGGGRRVLEFYSGIGGMRYSLMKA-------GVNAQVMEAFEINDIANDVYQFNF----RHRPYQGNIQSLTAADLDKYAADAWLLSPPCQPYTRQGL--QKDTGDARAFSFLQILELIPFLLQPPSMLFVENVVGFETSDTHAKLIEILGKTNFITQEFILSPLQFGIPYSRPRYFCLAKR-------------------------------KPSSFVNE---------VWNSQLIQSPRPLFEPFDTVANDGDLSQEDGLKLFQSCQPIENFLELKNTGNDIDVESVTSVTGLSNDVECDSL-DQYYVPSSLVERWGS-AMDVVYLDSKRCCCFTKSYYRYVKGTGSLLATVEPKKRDKASLKEQR------------------------LRYFTPREVANLHSFPEDFEFPEHISLRQRYALLGNSLSIAVVAPLLNYLFTE 370
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03650.1 ID=NO09G03650.1|Name=NO09G03650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp
ACTGGTGATCTCTATTTATTTCCTATGTGGACGTGGGGGGAGGACATGGA
TGGATGAAATGGATGAGAGGGTTCGTGGATAGATACGGGCGACCAAGAAG
GAGCCGAGCATTTCGCTCGAGCCGTCCACAACGCTTTTTGCCGTTCCTCT
CGACACACTACCACGCACACACAAACACACACCATAGATGCCCAGTGGCT
GCCTACTCCTGACGCTATTCTCCTTGTTGCTGCTATTCCTCCTACCTCCG
CGATCGTCTGGTTTTTTTGTGCCACTCCCTCCAAATTCCCACCCTTTGAC
CCCTGCTTGTATACGCTCCTTGGCATACGCCTCCTTCACGAGGAGGTGCC
TTTCTCACGACAGTCGTATGGACGGCACCACCACTACAATTTCGAGGAGA
AGAAGGAGGGATAAAGGGGAGGGAGGGAGGATGAAAGCTTTGGAGTTCTA
TAGTGGTATTGGCGGCTGGAGCGAGGCCTTGGAATTGGCAATGCGACAAC
TAGGAAGGGGAAAGGAAGACGTGCAGGTATCTGCCTCGTTCGAGATCAAC
TTGATGGCCAATGATGTCTATGCCGCGCAAGTCAAGGATCCCCCTCGTCC
ACGCCCTACCGCTCGTCTGATCGAGTCCCTGACAGTCAATGATTTGGAAA
AGCAGGCCGTTGCGTTGTGGATGCTCTCTCCGCCATGCCAGCCCTACACG
CGCAATAACAAGACGGAAAAACGAGACAAGGCCGACTCTCGCTCTGCCTC
TTTTCTCCATCTTTGTGCGCTTTTGCAGTCGATGGCCTCTCCTCCGGGTT
ACATCGCGTTGGAAAATGTAGAGGGGTTTGAGACGAGCGAATGTTGCGCC
CTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGGTATGGCATGGCGT
TCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGCCCGCGGTACTACG
CCTTGGCAAGGAGGGGAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
CCGGGCGGGGACGGGGGAGGGGGAGGAGGAGGAGGGGGAGGTGAAGGAGG
GAGAAGGTCACCGGCTGCAGGTGCTGAGGAGGAGGGGACTTTAAGGGTCT
TTCCGCCTGTATGGCGGGGGAAAACCCTCCCTCCCTTCCTTGCCTCCGCT
TCCTCTTCCTCGACCTCACCCGTCCTCCCTCCCTTCTCTTTGAAGGAGGA
AGGGGAAGAGGCGGTGGAGGGGGAGGGGGAGGGGGAGACGAGGCAGATTC
GAGAGTACCTCGAGCATGACCGGGGAAGAGAGGGGTTGTGGAGTACTTAC
GCCGTTCCTCCCTCCCTTCTTGCCAAGCCGTCTGCTTGGTGCTTTGACAT
TGTCTCGCCCACGAGCCGGCGCTCCTCCTGCTTCACTAAATCGTACTTCA
AGTTCATCCGGGGCACTGGCTCCATTCTCTATGACAAGACACGAGGGAAG
AAGGGGGAAGAAGAGGAGGAGATTCTGATCCAGGATCCGTCCAAAAGGAG
GTTCGAGGAGGACATGGGCTGGCAATCGCGTTTCGCAGGGGCCTTGAGGT
ACTTCACTCCAATGGAGGTGGCGCGCCTGATGCACTTCCCATCCTCTTTT
GCCTTCCCTGCCCATGTTTCTGACAAGAAATGCTACGAGCTTCTGGGGAA
CAGTTTGCATGTGGGAGTGGCCACGGAGCTGTTGGTGTGGTTACTGAGGG
AGGACGAGAGGGATGGAGGGATGGAGGGATGGAGGGCTGTAGAGGGGTAG back to topprotein sequence of NO09G03650.1 >NO09G03650.1-protein ID=NO09G03650.1-protein|Name=NO09G03650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=521bp
MPSGCLLLTLFSLLLLFLLPPRSSGFFVPLPPNSHPLTPACIRSLAYASF
TRRCLSHDSRMDGTTTTISRRRRRDKGEGGRMKALEFYSGIGGWSEALEL
AMRQLGRGKEDVQVSASFEINLMANDVYAAQVKDPPRPRPTARLIESLTV
NDLEKQAVALWMLSPPCQPYTRNNKTEKRDKADSRSASFLHLCALLQSMA
SPPGYIALENVEGFETSECCALFLSVLRDRGYEVWHGVLSPALFRWPNER
PRYYALARRGRGREGGREGGRPGGDGGGGGGGGGGEGGRRSPAAGAEEEG
TLRVFPPVWRGKTLPPFLASASSSSTSPVLPPFSLKEEGEEAVEGEGEGE
TRQIREYLEHDRGREGLWSTYAVPPSLLAKPSAWCFDIVSPTSRRSSCFT
KSYFKFIRGTGSILYDKTRGKKGEEEEEILIQDPSKRRFEEDMGWQSRFA
GALRYFTPMEVARLMHFPSSFAFPAHVSDKKCYELLGNSLHVGVATELLV
WLLREDERDGGMEGWRAVEG* back to topmRNA from alignment at chr9:1051806..1054796- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03650.1 ID=NO09G03650.1|Name=NO09G03650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2991bp|location=Sequence derived from alignment at chr9:1051806..1054796- (Nannochloropsis oceanica)
ACTGGTGATCTCTATTTATTTCCTATGTGGACGTGGGGGGAGGACATGGA
TGGATGAAATGGATGAGAGGGTTCGTGGATAGATACGGGCGACCAAGAAG
GAGCCGAGCATTTCGCTCGAGCCGTCCACAACGCTTTTTGCCGTTCCTCT
CGACACACTACCACGCACACACAAACACACACCATAGATGCCCAGTGGCT
GCCTACTCCTGACGCTATTCTCCTTGTTGCTGCTATTCCTCCTACCTCCG
CGATCGTCTGGTTTTTTTGTGCCACTCCCTCCAAATTCCCACCCTTTGAC
CCCTGCTTGTATACGCTCCTTGGCATACGCCTCCTTCACGAGGAGGTGCC
TTTCTCACGACAGTCGTATGGACGGCACCACCACTACAATTTCGAGGAGA
AGAAGGAGGGATAAAGGGGAGGGAGGGAGGATGAAAGCTTTGGAGTTCTA
TAGTGGTATTGGCGGCTGGAGCGAGGCCTTGGAATTGGCAATGCGACAAC
TAGGAAGGGGAAAGGAAGACGTGCAGGTGGGTGGGTGATGAAATGGAGGA
AGGCGGGTAGAGGATTTCGGAAAATGGACCTTTTCGCAGTGATTGTAAGC
AAATATGTCTTCTGTCTTCTGAACACCACGTTTTGGAAGCTTGGCCAACC
CACCCTTCCCTCCCTATCTCTTTCCCCTCCCCCCCCGGGCCCTCACTTCC
AGGTATCTGCCTCGTTCGAGATCAACTTGATGGCCAATGATGTCTATGCC
GCGCAAGGTCACGATAGAAGGGGGGGAAGGGAGGGACAGAGGAGGGGGGC
AGGAGAACAAAAGGATGTCACCCTGGTTAGCGCACAACTCCTCGCTTATC
TACCCTGTATCTCCCCCCCTCCTTCCCTCCCTTCCTCCCCCCCTCCTTCC
TTTGTAGTCAAGGATCCCCCTCGTCCACGCCCTACCGCTCGTCTGATCGA
GTCCCTGACAGTCAATGATTTGGAAAAGCAGGCCGTTGCGTTGTGGATGC
TCTCTCCGCCATGCCAGCCCTACACGCGCAATAACAAGACGGTAGGGAGA
GAGGGAGAGAGGGAGAGAGGGAGGGAGGGGAGGAGGGAGGAAGGAAAGTA
ATGACGTAATTTAAAAAATCCGCTACTTTCTAACACGTTCACATTCCCCT
CATGCACCTCCATTCCCTCCACTCGTTTATTGATACTCCTCTCATGCACC
TCCTTCTCCTCCACTCGTGTGCACTTCAGGAAAAACGAGACAAGGCCGAC
TCTCGCTCTGCCTCTTTTCTCCATCTTTGTGCGCTTTTGCAGTCGATGGC
CTCTCCTCCGGGTTACATCGCGTTGGAAAATGTAGAGGTGAGGGAGGGAG
GGAGGGAGGGAGGGTGGGAGGGAGTGTATAGGGTGGTACTTCAATTCTGG
CCTGGATGTCATCCGTCCTCTTACCCTCCCTGCTTCCCTCCCTCCGCTCC
TCCCTCTTTTTCAGGGGTTTGAGACGAGCGAATGTTGCGCCCTTTTCCTC
TCGGTCCTGCGTGATAGGGGCTATGAGGTATGGCATGGCGTTCTGTCCCC
TGCTCTCTTTAGGTGGCCCAATGAACGCCCGCGGTACTACGCCTTGGCAA
GGAGGGGAAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCCGGGCGGG
GACGGGGGAGGGGGAGGAGGAGGAGGGGGAGGTGAAGGAGGGAGAAGGTC
ACCGGCTGCAGGTGCTGAGGAGGAGGGGACTTTAAGGGTCTTTCCGCCTG
TATGGCGGGGGAAAACCCTCCCTCCCTTCCTTGCCTCCGCTTCCTCTTCC
TCGACCTCACCCGTCCTCCCTCCCTTCTCTTTGAAGGAGGAAGGGGAAGA
GGCGGTGGAGGGGGAGGGGGAGGGGGAGACGAGGCAGATTCGAGAGTACC
TCGAGCATGACCGGGGAAGAGAGGGGTTGTGGAGTACTTACGCCGTTCCT
CCCTCCCTTCTTGCCAAGCCGTCTGCTTGGTGCTTTGACATTGTCTCGCC
CACGAGCCGGCGGTACGAGGGGGGGGTCCCAGAGGGAGGGAGGGAAGGAG
GGAGGGATGAGAGGGAATGTGGTGTAGCTACGCCATGTCTCATTTTGTCT
CAATCAAACGACCCAATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTTCCCTTGATTCGTTTGCCCCTCTTTTTGTCATCCACAGTGT
TGGTTCTGATTTTCACCTCTTCCCCTTCCTCCCTCCCTCCCTCCCCCCCC
CTCTTTCAGCTCCTCCTGCTTCACTAAATCGTACTTCAAGTTCATCCGGG
GCACTGGCTCCATTCTCTATGACAAGACACGAGGGAAGAAGGGGGAAGAA
GAGGAGGAGATTCTGATCCAGGTACGTTTCGAAGGGGAGGGAAGGAAGGA
GGGAGTGAAGGAGGGGGTGGCCTCCTGCATGCATTCATTCATTCCTATAT
GTCCGCAGGATCCGTCCAAAAGGAGGTTCGAGGAGGACATGGGCTGGCAA
TCGCGTTTCGCAGGGGCCTTGAGGTAGATAGTGGTGGGAGGGAGAGAGGG
ATGGGCGGGAGGGGAGGAAGCGAGGGACGGAAGGAGACAGGTGGTTTAGC
CGTATCTTTCCTTCAGATCTTCCACGTCCTCTTTCCCTCTCTCCCAACGC
TTTCTTCTATGTATATTAACAGGTACTTCACTCCAATGGAGGTGGCGCGC
CTGATGCACTTCCCATCCTCTTTTGCCTTCCCTGCCCGTACGTTCCTCAC
CCTTTTTCCCTTCCCTCCCTCGCACCCTGATTCCTTCATTCATTCCATCC
TTTCACTCACCCTCCTCCCCTCTCTCCTTCTATCCCTCCCTCCCTTCCTT
GTAGATGTTTCTGACAAGAAATGCTACGAGCTTCTGGGGAACAGTTTGCA
TGTGGGAGTGGCCACGGAGCTGTTGGTGTGGTTACTGAGGGAGGACGAGA
GGGATGGAGGGATGGAGGGATGGAGGGCTGTAGAGGGGTAG back to topCoding sequence (CDS) from alignment at chr9:1051806..1054796- >NO09G03650.1 ID=NO09G03650.1|Name=NO09G03650.1|organism=Nannochloropsis oceanica|type=CDS|length=1563bp|location=Sequence derived from alignment at chr9:1051806..1054796- (Nannochloropsis oceanica)
ATGCCCAGTGGCTGCCTACTCCTGACGCTATTCTCCTTGTTGCTGCTATT
CCTCCTACCTCCGCGATCGTCTGGTTTTTTTGTGCCACTCCCTCCAAATT
CCCACCCTTTGACCCCTGCTTGTATACGCTCCTTGGCATACGCCTCCTTC
ACGAGGAGGTGCCTTTCTCACGACAGTCGTATGGACGGCACCACCACTAC
AATTTCGAGGAGAAGAAGGAGGGATAAAGGGGAGGGAGGGAGGATGAAAG
CTTTGGAGTTCTATAGTGGTATTGGCGGCTGGAGCGAGGCCTTGGAATTG
GCAATGCGACAACTAGGAAGGGGAAAGGAAGACGTGCAGGTATCTGCCTC
GTTCGAGATCAACTTGATGGCCAATGATGTCTATGCCGCGCAAGTCAAGG
ATCCCCCTCGTCCACGCCCTACCGCTCGTCTGATCGAGTCCCTGACAGTC
AATGATTTGGAAAAGCAGGCCGTTGCGTTGTGGATGCTCTCTCCGCCATG
CCAGCCCTACACGCGCAATAACAAGACGGAAAAACGAGACAAGGCCGACT
CTCGCTCTGCCTCTTTTCTCCATCTTTGTGCGCTTTTGCAGTCGATGGCC
TCTCCTCCGGGTTACATCGCGTTGGAAAATGTAGAGGGGTTTGAGACGAG
CGAATGTTGCGCCCTTTTCCTCTCGGTCCTGCGTGATAGGGGCTATGAGG
TATGGCATGGCGTTCTGTCCCCTGCTCTCTTTAGGTGGCCCAATGAACGC
CCGCGGTACTACGCCTTGGCAAGGAGGGGAAGGGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGCCGGGCGGGGACGGGGGAGGGGGAGGAGGAGGAGGGG
GAGGTGAAGGAGGGAGAAGGTCACCGGCTGCAGGTGCTGAGGAGGAGGGG
ACTTTAAGGGTCTTTCCGCCTGTATGGCGGGGGAAAACCCTCCCTCCCTT
CCTTGCCTCCGCTTCCTCTTCCTCGACCTCACCCGTCCTCCCTCCCTTCT
CTTTGAAGGAGGAAGGGGAAGAGGCGGTGGAGGGGGAGGGGGAGGGGGAG
ACGAGGCAGATTCGAGAGTACCTCGAGCATGACCGGGGAAGAGAGGGGTT
GTGGAGTACTTACGCCGTTCCTCCCTCCCTTCTTGCCAAGCCGTCTGCTT
GGTGCTTTGACATTGTCTCGCCCACGAGCCGGCGCTCCTCCTGCTTCACT
AAATCGTACTTCAAGTTCATCCGGGGCACTGGCTCCATTCTCTATGACAA
GACACGAGGGAAGAAGGGGGAAGAAGAGGAGGAGATTCTGATCCAGGATC
CGTCCAAAAGGAGGTTCGAGGAGGACATGGGCTGGCAATCGCGTTTCGCA
GGGGCCTTGAGGTACTTCACTCCAATGGAGGTGGCGCGCCTGATGCACTT
CCCATCCTCTTTTGCCTTCCCTGCCCATGTTTCTGACAAGAAATGCTACG
AGCTTCTGGGGAACAGTTTGCATGTGGGAGTGGCCACGGAGCTGTTGGTG
TGGTTACTGAGGGAGGACGAGAGGGATGGAGGGATGGAGGGATGGAGGGC
TGTAGAGGGGTAG back to top
|