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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:1014512..1017950 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03550.5 vs.
Match: EWM27447.1 (transmembrane protein [Nannochloropsis gaditana]) HSP 1 Score: 423.3 bits (1087), Expect = 8.600e-115 Identity = 219/346 (63.29%), Postives = 266/346 (76.88%), Query Frame = 0
Query: 12 QEHQPALDKHEAWPDPEEEGKDGNYRGYTMDVTASAVEEMQVGEENVQWAYRLIQLLDADTRLFLADGLLRKVEAFVATGTGPLSQWARRVMVIPENAKRLAELRRRVEVCRQAARDMRSDDWHLAHTEDGIETFSRKDEGDNTLAWRTHGEIEDCPVVSQLAVLREPDHYHRWIPLMDKSKVVKRLGKIEQMVWFRVAGTGIPFVRDAVLHLYGCDASEENLIILSGASMPESEITDEMDVRPPKKKWNHARVDIKYFSIQVSFLPSS------------SLLFLPPR----FPFFLLAFFLFFSISFLPR--HFPSLLLTSSLPFLHPHFPVFLLTPCLSSSFS 340
QE +++H+ WPDPE+EG+DG+YRGYTM+V A+ + +QVGEENVQ AYRL+QLLDADTRLFLAD LL+K+EAF TGTGP ++WA VM E+++RL ELRRRV+VCRQAARDM+S+DW LAHTE+GI+TF R+DEGDNTLAWRTHGEIEDCPVVSQLAVLRE DHYH WIPLMDKSKVVKRLGKIEQM+WFRVAG G+PFVRDAVLHLYGCDASEE+LIILSGAS+PE EIT+ M VRPPKKKWNHARVDIKYFSIQ+ L + + F+P + F FL + ++F + R P T+ L P + +L+ CL+ +++
Sbjct: 8 QERISFVNQHQPWPDPEKEGRDGSYRGYTMEVAANETQALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAFTRTGTGPQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSEDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEEDLIILSGASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYT 353
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03550.5 ID=NO09G03550.5|Name=NO09G03550.5|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp ACAGGTAACATACGGTCGTGATTATTTTTCCTCCATAGCGCCCATTGATG TGCTCTTTCCGGCGGAAATAGCCGCAACACCAACACATCAAGCGGCATCG CCTGCTACTGCGACTACCTGCATGCTGAAGGCACAATCTGCGTTTAGCCC AGCATAACTACCTTGGAAAAGGAGAAAGCCTTCCTACACTATCTTATCCA GGGCCTTCGGAGCCCGCATGGCCCCACGCGCACTCGGTACGTTATGTATG TGGTTATGATGCTCAGTCTGCTCTGCCCTGTCTCTCCATCCTTCTCTCGT TCGGCAAGGCAAGTCGAGACCCGCCCATTATGGCCCCCCTAGAGGCAAGC AGCAGTCCATCCCAAGAGCATCAGCCAGCGTTGGACAAGCACGAAGCATG GCCCGACCCAGAAGAGGAAGGCAAGGATGGCAACTATCGCGGATACACCA TGGATGTGACCGCAAGCGCAGTGGAGGAAATGCAAGTGGGGGAGGAGAAT GTGCAATGGGCCTATCGATTGATCCAGCTCTTGGATGCCGACACTCGTCT GTTTTTGGCGGATGGGCTGCTTCGCAAGGTGGAGGCATTCGTAGCTACCG GTACCGGCCCCCTCTCGCAGTGGGCGCGACGAGTGATGGTGATACCGGAG AATGCAAAGCGCTTGGCTGAACTCCGGCGACGGGTGGAAGTGTGTCGACA GGCAGCGAGGGACATGCGCTCCGATGATTGGCATCTCGCTCACACGGAAG ACGGGATTGAGACGTTTTCTCGAAAGGATGAAGGGGACAATACATTGGCG TGGCGGACTCATGGAGAGATTGAGGATTGCCCGGTGGTGTCCCAGCTGGC CGTTCTGCGAGAGCCGGATCACTACCACCGATGGATTCCTCTTATGGACA AAAGCAAAGTCGTCAAGCGCCTCGGCAAGATCGAGCAGATGGTCTGGTTC CGGGTAGCAGGCACCGGCATCCCCTTTGTGCGTGACGCCGTCCTCCACCT GTACGGGTGCGACGCCTCGGAGGAAAACCTCATCATCCTGTCCGGTGCCT CCATGCCAGAGAGCGAGATAACGGACGAGATGGACGTGAGGCCGCCCAAG AAAAAGTGGAACCATGCGCGGGTCGATATCAAGTACTTCAGCATCCAGGT ATCTTTCCTTCCTTCCTCCTCACTTCTCTTCCTCCCTCCTCGCTTTCCTT TCTTCCTCCTTGCTTTTTTCCTGTTCTTTTCGATTTCCTTCCTCCCTCGT CACTTCCCTTCCCTCCTCCTCACTTCCTCGCTACCCTTCCTTCATCCTCA CTTTCCGGTCTTCCTCCTCACCCCCTGCCTTTCCTCCTCTTTTTCTTTTT TCCCTCCTCGCTCTCCCTCTTTCCTCCTCACTACCCTTCCTCGTTTTTCG CTTCCCTTCCCCCTCGCCCCGTGTTCACTTTTCTCCCCTTCCAGAACTTT GAACGCCTCGAAGCTCATCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTTC GTGCCTGCCTGTACAGCTCAAGATCCTGTCCCCCACGCACTGTAAGATCG ACCTCATCTACAACCTGGACGTGAAGCTAACACTTGTCCCGCAGGCCATC ATCAACTACTTCTCCAAATTCACCTGCGGATGGGTGATATGGTTCCTTTT CCAGGAGATGCGACGCATTCAGACAGATCCTGTACATAACCCCACGGCGC AGCTCATGCGCTCGGATCCTTTCTATGCCAACTACCTCGTGCCTTACTGT CTTCACCTCGCCCACACCAAGGGGTGGGCGGTACCGGACGTACCCGCGTT TGAAGTAGACCGTGATTGCACGACTGCCAAGGCCTGGAGGCAAGAGCACC ACGAGCTGCTCGCCAAAAATAGATTGCTTTCAGGAGGAGGAGGGGAGGGG GGGAGTGGGGGAGAGGAGAGAGGAGGTGGGGGACAGGAAGGAAAGTAGGG CGCGGTAGTGGCGGAAGGGTAGCTGTGATGGGAGTAGAAAGGAGGGGGAA AGGGAGGGAGGGGGGGGGAGATAGAAGTGTACAGCCTGGATAAATGAAGA TGGTCAGCGACGGCGAAGATATATGGAGGTTGAAGAAGGAGGGGAAGTGG GAGGGAGACCAAAAAGAGGCAAGAGTAGAGTAGAGTTGCGTAGATTTTGA TTGGATTGGAGTGCCTGGACGTGTAAGGGGAGTTCGAGAGGTAGGAAGGA GGAGAAAAGAAAACGAGGCCGCCATGAGATGTTGGGCTGACAGATCCGAG ATAGATCCTCTATATCTCATACGCT back to topprotein sequence of NO09G03550.5 >NO09G03550.5-protein ID=NO09G03550.5-protein|Name=NO09G03550.5|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp MAPLEASSSPSQEHQPALDKHEAWPDPEEEGKDGNYRGYTMDVTASAVEE MQVGEENVQWAYRLIQLLDADTRLFLADGLLRKVEAFVATGTGPLSQWAR RVMVIPENAKRLAELRRRVEVCRQAARDMRSDDWHLAHTEDGIETFSRKD EGDNTLAWRTHGEIEDCPVVSQLAVLREPDHYHRWIPLMDKSKVVKRLGK IEQMVWFRVAGTGIPFVRDAVLHLYGCDASEENLIILSGASMPESEITDE MDVRPPKKKWNHARVDIKYFSIQVSFLPSSSLLFLPPRFPFFLLAFFLFF SISFLPRHFPSLLLTSSLPFLHPHFPVFLLTPCLSSSFSFFPPRSPSFLL TTLPRFSLPFPLAPCSLFSPSRTLNASKLIPLPPSLPPSLRACLYSSRSC PPRTVRSTSSTTWT* back to topmRNA from alignment at chr9:1014512..1017950- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03550.5 ID=NO09G03550.5|Name=NO09G03550.5|organism=Nannochloropsis oceanica|type=mRNA|length=3439bp|location=Sequence derived from alignment at chr9:1014512..1017950- (Nannochloropsis oceanica) ACAGGTAACATACGGTCGTGATTATTTTTCCTCCATAGCGCCCATTGATG
TGCTCTTTCCGGCGGAAATAGCCGCAACACCAACACATCAAGCGGCATCG
CCTGCTACTGCGACTACCTGCATGCTGAAGGCACAATCTGCGTTTAGCCC
AGCATAACTACCTTGGAAAAGGAGAAAGCCTTCCTACACTATCTTATCCA
GGGCCTTCGGAGCCCGCATGGCCCCACGCGCACTCGGTACGTTATGTATG
TGGTTATGATGCTCAGTCTGCTCTGCCCTGTCTCTCCATCCTTCTCTCGT
TCGGCAAGGCAAGTCGAGACCCGCCCATTATGGCCCCCCTAGAGGCAAGC
AGCAGTCCATCCCAAGAGCATCAGCCAGCGTTGGACAAGGTGCGAATGTG
TATCTCTCTCTTATTCTTGTTATGCGGCTCTAAATTTTTTCTGTGTGGCT
GAGCAATACGCTTATTTCTCGCTTCCTCTCCCCTTCCCCAATCCCACCGT
ACGCACCCTAGCACGAAGCATGGCCCGACCCAGAAGAGGAAGGCAAGGAT
GGCAACTATCGCGGATACACCATGGATGTGACCGCAAGCGCAGTGGAGGA
AATGCAAGTGGGGGAGGAGAATGTGCAATGGGCCTATCGATTGATCCAGC
TCTTGGATGCCGACACTCGTCTGTTTTTGGCGGATGGGCTGCTTCGCAAG
GTGGAGGCATTCGTAGCTACCGGTGAGTACATTAGAAAGCAGACACTTTT
TTTATGGATGGAGATAAAGGCATGGCATACGAACGAAAGCTCCGACATAG
GTTGCTCCATACTGAATAAATAGGAAGCAAAAGGGAGTTGACTCTTGATG
ATTTCATTCCCCTTATGTCCCAGGTACCGGCCCCCTCTCGCAGTGGGCGC
GACGAGTGATGGTGATACCGGAGAATGCAAAGCGCTTGGCTGAACTCCGG
CGACGGGTGGAAGTGTGTCGACAGGCAGCGAGGTTAGAAAGAAGGGCGTG
AAAGAGGGCGCTTCGACAAGCATTCACTCACCTCTCTAGCCTCCTCCGTC
TGCATCCTCACACAGGGACATGCGCTCCGATGATTGGCATCTCGCTCACA
CGGAAGACGGGATTGAGACGTTTTCTCGAAAGGATGAAGGGGACAATACA
TTGGCGTGGCGGACTCATGGAGAGATTGAGGATTGCCCGGTGGTGTCCCA
GGTAGAGGAAGGAGGGAGCGAGGGACGGACGGAGGGAGGGGAGGAAGAGA
GGAGGCACGTCGTGTACGTCGGCAGATATACAATTTCGACATTCATTTGG
TATCTAGCAGTACTCCAATTTATGTGTCATAGCCATAAGCGTGAAAACCC
TCCCTCTCTCCCTCCCTCCCCCTCACCACAGCTGGCCGTTCTGCGAGAGC
CGGATCACTACCACCGATGGATTCCTCTTATGGACAAAAGCAAAGTCGTC
AAGCGCCTCGGCAAGATCGAGCAGATGGTCTGGTTCCGGGTAGCAGGCAC
CGGGTATGCCCTCTCTCCCTTCCTTTGTCCCTCCCTTCCTCCTGCCCTTT
CGACCGTTTTTCCCCCTTCCGTCATTCCCTTTTCATTTCCTCCTTTCCTC
TCTCCTTCCCTCTTGGCTAGACATTCAACTGACATACCCTCTCTCTGTCT
CCCTCCTCCCCTCCCTCCCTCCCTCCCTCCCCCCCTCAGCATCCCCTTTG
TGCGTGACGCCGTCCTCCACCTGTACGGGTGCGACGCCTCGGAGGAAAAC
CTCATCATCCTGTCCGGTGCCTCCATGCCAGAGAGCGAGATAACGGACGA
GATGGACGTGAGGCCGCCCAAGAAAAAGTGGAACCATGCGCGGGTCGATA
TCAAGTACTTCAGCATCCAGGTATCTTTCCTTCCTTCCTCCTCACTTCTC
TTCCTCCCTCCTCGCTTTCCTTTCTTCCTCCTTGCTTTTTTCCTGTTCTT
TTCGATTTCCTTCCTCCCTCGTCACTTCCCTTCCCTCCTCCTCACTTCCT
CGCTACCCTTCCTTCATCCTCACTTTCCGGTCTTCCTCCTCACCCCCTGC
CTTTCCTCCTCTTTTTCTTTTTTCCCTCCTCGCTCTCCCTCTTTCCTCCT
CACTACCCTTCCTCGTTTTTCGCTTCCCTTCCCCCTCGCCCCGTGTTCAC
TTTTCTCCCCTTCCAGAACTTTGAACGCCTCGAAGCTCATCCCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCGTGCCTGCCTGTACAGCTCAAGATCCTG
TCCCCCACGCACTGTAAGATCGACCTCATCTACAACCTGGACGTGAAGCT
AACACTTGTCCCGCAGGCCATCATCAACTACTTCTCCAAATTCACCTGCG
GATGGGTGATATGGTTCCTTTTCCAGGAGGTGCGTCAAAGGCGTTATAAC
ACATCCCGTCTCAGGGGGGAGGGAGGGAGGAAGGGAGGAAAGGAGGTTTC
TCCTGCATTCTCGAATCTGCACGCCTTCCCTCTGAGCTGCTCTCCCTCCC
TGCCTCCCTCCCTCCCTCCCCCCCCCTCATCTGCCCATAGATGCGACGCA
TTCAGACAGATCCTGTACATAACCCCACGGCGCAGCTCATGCGCTCGGAT
CCTTTCTATGCCAACTACCTCGTGCCTTACTGTCTTCACCTCGCCCACAC
CAAGGTAGGCAGCGTCATCTCGCTCCTTCTCCTTCCTCCCTCCATTCTTG
GACCGTTACATTCTGTACACACATCTGATATTTCTTTTCATCCCTTTTCT
TCACCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTTCTGATC
TCTTCTCGCCAATTTTGCGGGTTTGAGCTAGAGGCTGGATTTCTCCGCTT
GACCCACTCCCTCCTTCTCTCTCTCTTTCCTACCTTCTCCCCTCCCTCCT
TCTCTCCCTCCCTCCTTCCTTCCTTCCCTCCCTAGGGGTGGGCGGTACCG
GACGTACCCGCGTTTGAAGTAGACCGTGATTGCACGACTGCCAAGGCCTG
GAGGCAAGAGCACCACGAGCTGCTCGCCAAAAATAGATTGCTTTCAGGAG
GAGGAGGGGAGGGGGGGAGTGGGGGAGAGGAGAGAGGAGGTGGGGGACAG
GAAGGAAAGTAGGGCGCGGTAGTGGCGGAAGGGTAGCTGTGATGGGAGTA
GAAAGGAGGGGGAAAGGGAGGGAGGGGGGGGGAGATAGAAGTGTACAGCC
TGGATAAATGAAGATGGTCAGCGACGGCGAAGATATATGGAGGTTGAAGA
AGGAGGGGAAGTGGGAGGGAGACCAAAAAGAGGCAAGAGTAGAGTAGAGT
TGCGTAGATTTTGATTGGATTGGAGTGCCTGGACGTGTAAGGGGAGTTCG
AGAGGTAGGAAGGAGGAGAAAAGAAAACGAGGCCGCCATGAGATGTTGGG
CTGACAGATCCGAGATAGATCCTCTATATCTCATACGCT back to topCoding sequence (CDS) from alignment at chr9:1014512..1017950- >NO09G03550.5 ID=NO09G03550.5|Name=NO09G03550.5|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr9:1014512..1017950- (Nannochloropsis oceanica) ATGGCCCCCCTAGAGGCAAGCAGCAGTCCATCCCAAGAGCATCAGCCAGC GTTGGACAAGCACGAAGCATGGCCCGACCCAGAAGAGGAAGGCAAGGATG GCAACTATCGCGGATACACCATGGATGTGACCGCAAGCGCAGTGGAGGAA ATGCAAGTGGGGGAGGAGAATGTGCAATGGGCCTATCGATTGATCCAGCT CTTGGATGCCGACACTCGTCTGTTTTTGGCGGATGGGCTGCTTCGCAAGG TGGAGGCATTCGTAGCTACCGGTACCGGCCCCCTCTCGCAGTGGGCGCGA CGAGTGATGGTGATACCGGAGAATGCAAAGCGCTTGGCTGAACTCCGGCG ACGGGTGGAAGTGTGTCGACAGGCAGCGAGGGACATGCGCTCCGATGATT GGCATCTCGCTCACACGGAAGACGGGATTGAGACGTTTTCTCGAAAGGAT GAAGGGGACAATACATTGGCGTGGCGGACTCATGGAGAGATTGAGGATTG CCCGGTGGTGTCCCAGCTGGCCGTTCTGCGAGAGCCGGATCACTACCACC GATGGATTCCTCTTATGGACAAAAGCAAAGTCGTCAAGCGCCTCGGCAAG ATCGAGCAGATGGTCTGGTTCCGGGTAGCAGGCACCGGCATCCCCTTTGT GCGTGACGCCGTCCTCCACCTGTACGGGTGCGACGCCTCGGAGGAAAACC TCATCATCCTGTCCGGTGCCTCCATGCCAGAGAGCGAGATAACGGACGAG ATGGACGTGAGGCCGCCCAAGAAAAAGTGGAACCATGCGCGGGTCGATAT CAAGTACTTCAGCATCCAGGTATCTTTCCTTCCTTCCTCCTCACTTCTCT TCCTCCCTCCTCGCTTTCCTTTCTTCCTCCTTGCTTTTTTCCTGTTCTTT TCGATTTCCTTCCTCCCTCGTCACTTCCCTTCCCTCCTCCTCACTTCCTC GCTACCCTTCCTTCATCCTCACTTTCCGGTCTTCCTCCTCACCCCCTGCC TTTCCTCCTCTTTTTCTTTTTTCCCTCCTCGCTCTCCCTCTTTCCTCCTC ACTACCCTTCCTCGTTTTTCGCTTCCCTTCCCCCTCGCCCCGTGTTCACT TTTCTCCCCTTCCAGAACTTTGAACGCCTCGAAGCTCATCCCCCTCCCTC CCTCCCTCCCTCCCTCCCTTCGTGCCTGCCTGTACAGCTCAAGATCCTGT CCCCCACGCACTGTAAGATCGACCTCATCTACAACCTGGACGTGA back to top
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