NO09G03550.5, NO09G03550.5 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03550.5
Unique NameNO09G03550.5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2275
Alignment locationchr9:1014512..1017950 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1014512..1017950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G03550.5 vs.
Match: EWM27447.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 423.3 bits (1087), Expect = 8.600e-115
Identity = 219/346 (63.29%), Postives = 266/346 (76.88%), Query Frame = 0
Query:   12 QEHQPALDKHEAWPDPEEEGKDGNYRGYTMDVTASAVEEMQVGEENVQWAYRLIQLLDADTRLFLADGLLRKVEAFVATGTGPLSQWARRVMVIPENAKRLAELRRRVEVCRQAARDMRSDDWHLAHTEDGIETFSRKDEGDNTLAWRTHGEIEDCPVVSQLAVLREPDHYHRWIPLMDKSKVVKRLGKIEQMVWFRVAGTGIPFVRDAVLHLYGCDASEENLIILSGASMPESEITDEMDVRPPKKKWNHARVDIKYFSIQVSFLPSS------------SLLFLPPR----FPFFLLAFFLFFSISFLPR--HFPSLLLTSSLPFLHPHFPVFLLTPCLSSSFS 340
            QE    +++H+ WPDPE+EG+DG+YRGYTM+V A+  + +QVGEENVQ AYRL+QLLDADTRLFLAD LL+K+EAF  TGTGP ++WA  VM   E+++RL ELRRRV+VCRQAARDM+S+DW LAHTE+GI+TF R+DEGDNTLAWRTHGEIEDCPVVSQLAVLRE DHYH WIPLMDKSKVVKRLGKIEQM+WFRVAG G+PFVRDAVLHLYGCDASEE+LIILSGAS+PE EIT+ M VRPPKKKWNHARVDIKYFSIQ+  L  +             + F+P +    F  FL  + ++F    + R    P    T+ L    P +  +L+  CL+ +++
Sbjct:    8 QERISFVNQHQPWPDPEKEGRDGSYRGYTMEVAANETQALQVGEENVQVAYRLVQLLDADTRLFLADDLLQKIEAFTRTGTGPQAEWAMHVMARSEDSQRLEELRRRVQVCRQAARDMQSEDWELAHTEEGIQTFLRRDEGDNTLAWRTHGEIEDCPVVSQLAVLREADHYHDWIPLMDKSKVVKRLGKIEQMLWFRVAGRGLPFVRDAVLHLYGCDASEEDLIILSGASIPEDEITESMGVRPPKKKWNHARVDIKYFSIQLRILSPTHTKIDLIYKLDVKIKFVPQKVINYFSKFLCGWVIWFLFQEMRRLQTDPVESPTAQLMRSEPFYANYLVPYCLNLAYT 353          
The following BLAST results are available for this feature:
BLAST of NO09G03550.5 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27447.18.600e-11563.29transmembrane protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03550NO09G03550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03550.5NO09G03550.5-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03550.5.cds1NO09G03550.5.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.5.cds2NO09G03550.5.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.5.cds3NO09G03550.5.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.5.cds4NO09G03550.5.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.5.cds5NO09G03550.5.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03550.5.cds6NO09G03550.5.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03550.5 ID=NO09G03550.5|Name=NO09G03550.5|organism=Nannochloropsis oceanica|type=mRNA|length=2275bp
ACAGGTAACATACGGTCGTGATTATTTTTCCTCCATAGCGCCCATTGATG
TGCTCTTTCCGGCGGAAATAGCCGCAACACCAACACATCAAGCGGCATCG
CCTGCTACTGCGACTACCTGCATGCTGAAGGCACAATCTGCGTTTAGCCC
AGCATAACTACCTTGGAAAAGGAGAAAGCCTTCCTACACTATCTTATCCA
GGGCCTTCGGAGCCCGCATGGCCCCACGCGCACTCGGTACGTTATGTATG
TGGTTATGATGCTCAGTCTGCTCTGCCCTGTCTCTCCATCCTTCTCTCGT
TCGGCAAGGCAAGTCGAGACCCGCCCATTATGGCCCCCCTAGAGGCAAGC
AGCAGTCCATCCCAAGAGCATCAGCCAGCGTTGGACAAGCACGAAGCATG
GCCCGACCCAGAAGAGGAAGGCAAGGATGGCAACTATCGCGGATACACCA
TGGATGTGACCGCAAGCGCAGTGGAGGAAATGCAAGTGGGGGAGGAGAAT
GTGCAATGGGCCTATCGATTGATCCAGCTCTTGGATGCCGACACTCGTCT
GTTTTTGGCGGATGGGCTGCTTCGCAAGGTGGAGGCATTCGTAGCTACCG
GTACCGGCCCCCTCTCGCAGTGGGCGCGACGAGTGATGGTGATACCGGAG
AATGCAAAGCGCTTGGCTGAACTCCGGCGACGGGTGGAAGTGTGTCGACA
GGCAGCGAGGGACATGCGCTCCGATGATTGGCATCTCGCTCACACGGAAG
ACGGGATTGAGACGTTTTCTCGAAAGGATGAAGGGGACAATACATTGGCG
TGGCGGACTCATGGAGAGATTGAGGATTGCCCGGTGGTGTCCCAGCTGGC
CGTTCTGCGAGAGCCGGATCACTACCACCGATGGATTCCTCTTATGGACA
AAAGCAAAGTCGTCAAGCGCCTCGGCAAGATCGAGCAGATGGTCTGGTTC
CGGGTAGCAGGCACCGGCATCCCCTTTGTGCGTGACGCCGTCCTCCACCT
GTACGGGTGCGACGCCTCGGAGGAAAACCTCATCATCCTGTCCGGTGCCT
CCATGCCAGAGAGCGAGATAACGGACGAGATGGACGTGAGGCCGCCCAAG
AAAAAGTGGAACCATGCGCGGGTCGATATCAAGTACTTCAGCATCCAGGT
ATCTTTCCTTCCTTCCTCCTCACTTCTCTTCCTCCCTCCTCGCTTTCCTT
TCTTCCTCCTTGCTTTTTTCCTGTTCTTTTCGATTTCCTTCCTCCCTCGT
CACTTCCCTTCCCTCCTCCTCACTTCCTCGCTACCCTTCCTTCATCCTCA
CTTTCCGGTCTTCCTCCTCACCCCCTGCCTTTCCTCCTCTTTTTCTTTTT
TCCCTCCTCGCTCTCCCTCTTTCCTCCTCACTACCCTTCCTCGTTTTTCG
CTTCCCTTCCCCCTCGCCCCGTGTTCACTTTTCTCCCCTTCCAGAACTTT
GAACGCCTCGAAGCTCATCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTTC
GTGCCTGCCTGTACAGCTCAAGATCCTGTCCCCCACGCACTGTAAGATCG
ACCTCATCTACAACCTGGACGTGAAGCTAACACTTGTCCCGCAGGCCATC
ATCAACTACTTCTCCAAATTCACCTGCGGATGGGTGATATGGTTCCTTTT
CCAGGAGATGCGACGCATTCAGACAGATCCTGTACATAACCCCACGGCGC
AGCTCATGCGCTCGGATCCTTTCTATGCCAACTACCTCGTGCCTTACTGT
CTTCACCTCGCCCACACCAAGGGGTGGGCGGTACCGGACGTACCCGCGTT
TGAAGTAGACCGTGATTGCACGACTGCCAAGGCCTGGAGGCAAGAGCACC
ACGAGCTGCTCGCCAAAAATAGATTGCTTTCAGGAGGAGGAGGGGAGGGG
GGGAGTGGGGGAGAGGAGAGAGGAGGTGGGGGACAGGAAGGAAAGTAGGG
CGCGGTAGTGGCGGAAGGGTAGCTGTGATGGGAGTAGAAAGGAGGGGGAA
AGGGAGGGAGGGGGGGGGAGATAGAAGTGTACAGCCTGGATAAATGAAGA
TGGTCAGCGACGGCGAAGATATATGGAGGTTGAAGAAGGAGGGGAAGTGG
GAGGGAGACCAAAAAGAGGCAAGAGTAGAGTAGAGTTGCGTAGATTTTGA
TTGGATTGGAGTGCCTGGACGTGTAAGGGGAGTTCGAGAGGTAGGAAGGA
GGAGAAAAGAAAACGAGGCCGCCATGAGATGTTGGGCTGACAGATCCGAG
ATAGATCCTCTATATCTCATACGCT
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protein sequence of NO09G03550.5

>NO09G03550.5-protein ID=NO09G03550.5-protein|Name=NO09G03550.5|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MAPLEASSSPSQEHQPALDKHEAWPDPEEEGKDGNYRGYTMDVTASAVEE
MQVGEENVQWAYRLIQLLDADTRLFLADGLLRKVEAFVATGTGPLSQWAR
RVMVIPENAKRLAELRRRVEVCRQAARDMRSDDWHLAHTEDGIETFSRKD
EGDNTLAWRTHGEIEDCPVVSQLAVLREPDHYHRWIPLMDKSKVVKRLGK
IEQMVWFRVAGTGIPFVRDAVLHLYGCDASEENLIILSGASMPESEITDE
MDVRPPKKKWNHARVDIKYFSIQVSFLPSSSLLFLPPRFPFFLLAFFLFF
SISFLPRHFPSLLLTSSLPFLHPHFPVFLLTPCLSSSFSFFPPRSPSFLL
TTLPRFSLPFPLAPCSLFSPSRTLNASKLIPLPPSLPPSLRACLYSSRSC
PPRTVRSTSSTTWT*
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mRNA from alignment at chr9:1014512..1017950-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03550.5 ID=NO09G03550.5|Name=NO09G03550.5|organism=Nannochloropsis oceanica|type=mRNA|length=3439bp|location=Sequence derived from alignment at chr9:1014512..1017950- (Nannochloropsis oceanica)
ACAGGTAACATACGGTCGTGATTATTTTTCCTCCATAGCGCCCATTGATG TGCTCTTTCCGGCGGAAATAGCCGCAACACCAACACATCAAGCGGCATCG CCTGCTACTGCGACTACCTGCATGCTGAAGGCACAATCTGCGTTTAGCCC AGCATAACTACCTTGGAAAAGGAGAAAGCCTTCCTACACTATCTTATCCA GGGCCTTCGGAGCCCGCATGGCCCCACGCGCACTCGGTACGTTATGTATG TGGTTATGATGCTCAGTCTGCTCTGCCCTGTCTCTCCATCCTTCTCTCGT TCGGCAAGGCAAGTCGAGACCCGCCCATTATGGCCCCCCTAGAGGCAAGC AGCAGTCCATCCCAAGAGCATCAGCCAGCGTTGGACAAGGTGCGAATGTG TATCTCTCTCTTATTCTTGTTATGCGGCTCTAAATTTTTTCTGTGTGGCT GAGCAATACGCTTATTTCTCGCTTCCTCTCCCCTTCCCCAATCCCACCGT ACGCACCCTAGCACGAAGCATGGCCCGACCCAGAAGAGGAAGGCAAGGAT GGCAACTATCGCGGATACACCATGGATGTGACCGCAAGCGCAGTGGAGGA AATGCAAGTGGGGGAGGAGAATGTGCAATGGGCCTATCGATTGATCCAGC TCTTGGATGCCGACACTCGTCTGTTTTTGGCGGATGGGCTGCTTCGCAAG GTGGAGGCATTCGTAGCTACCGGTGAGTACATTAGAAAGCAGACACTTTT TTTATGGATGGAGATAAAGGCATGGCATACGAACGAAAGCTCCGACATAG GTTGCTCCATACTGAATAAATAGGAAGCAAAAGGGAGTTGACTCTTGATG ATTTCATTCCCCTTATGTCCCAGGTACCGGCCCCCTCTCGCAGTGGGCGC GACGAGTGATGGTGATACCGGAGAATGCAAAGCGCTTGGCTGAACTCCGG CGACGGGTGGAAGTGTGTCGACAGGCAGCGAGGTTAGAAAGAAGGGCGTG AAAGAGGGCGCTTCGACAAGCATTCACTCACCTCTCTAGCCTCCTCCGTC TGCATCCTCACACAGGGACATGCGCTCCGATGATTGGCATCTCGCTCACA CGGAAGACGGGATTGAGACGTTTTCTCGAAAGGATGAAGGGGACAATACA TTGGCGTGGCGGACTCATGGAGAGATTGAGGATTGCCCGGTGGTGTCCCA GGTAGAGGAAGGAGGGAGCGAGGGACGGACGGAGGGAGGGGAGGAAGAGA GGAGGCACGTCGTGTACGTCGGCAGATATACAATTTCGACATTCATTTGG TATCTAGCAGTACTCCAATTTATGTGTCATAGCCATAAGCGTGAAAACCC TCCCTCTCTCCCTCCCTCCCCCTCACCACAGCTGGCCGTTCTGCGAGAGC CGGATCACTACCACCGATGGATTCCTCTTATGGACAAAAGCAAAGTCGTC AAGCGCCTCGGCAAGATCGAGCAGATGGTCTGGTTCCGGGTAGCAGGCAC CGGGTATGCCCTCTCTCCCTTCCTTTGTCCCTCCCTTCCTCCTGCCCTTT CGACCGTTTTTCCCCCTTCCGTCATTCCCTTTTCATTTCCTCCTTTCCTC TCTCCTTCCCTCTTGGCTAGACATTCAACTGACATACCCTCTCTCTGTCT CCCTCCTCCCCTCCCTCCCTCCCTCCCTCCCCCCCTCAGCATCCCCTTTG TGCGTGACGCCGTCCTCCACCTGTACGGGTGCGACGCCTCGGAGGAAAAC CTCATCATCCTGTCCGGTGCCTCCATGCCAGAGAGCGAGATAACGGACGA GATGGACGTGAGGCCGCCCAAGAAAAAGTGGAACCATGCGCGGGTCGATA TCAAGTACTTCAGCATCCAGGTATCTTTCCTTCCTTCCTCCTCACTTCTC TTCCTCCCTCCTCGCTTTCCTTTCTTCCTCCTTGCTTTTTTCCTGTTCTT TTCGATTTCCTTCCTCCCTCGTCACTTCCCTTCCCTCCTCCTCACTTCCT CGCTACCCTTCCTTCATCCTCACTTTCCGGTCTTCCTCCTCACCCCCTGC CTTTCCTCCTCTTTTTCTTTTTTCCCTCCTCGCTCTCCCTCTTTCCTCCT CACTACCCTTCCTCGTTTTTCGCTTCCCTTCCCCCTCGCCCCGTGTTCAC TTTTCTCCCCTTCCAGAACTTTGAACGCCTCGAAGCTCATCCCCCTCCCT CCCTCCCTCCCTCCCTCCCTTCGTGCCTGCCTGTACAGCTCAAGATCCTG TCCCCCACGCACTGTAAGATCGACCTCATCTACAACCTGGACGTGAAGCT AACACTTGTCCCGCAGGCCATCATCAACTACTTCTCCAAATTCACCTGCG GATGGGTGATATGGTTCCTTTTCCAGGAGGTGCGTCAAAGGCGTTATAAC ACATCCCGTCTCAGGGGGGAGGGAGGGAGGAAGGGAGGAAAGGAGGTTTC TCCTGCATTCTCGAATCTGCACGCCTTCCCTCTGAGCTGCTCTCCCTCCC TGCCTCCCTCCCTCCCTCCCCCCCCCTCATCTGCCCATAGATGCGACGCA TTCAGACAGATCCTGTACATAACCCCACGGCGCAGCTCATGCGCTCGGAT CCTTTCTATGCCAACTACCTCGTGCCTTACTGTCTTCACCTCGCCCACAC CAAGGTAGGCAGCGTCATCTCGCTCCTTCTCCTTCCTCCCTCCATTCTTG GACCGTTACATTCTGTACACACATCTGATATTTCTTTTCATCCCTTTTCT TCACCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTTCTGATC TCTTCTCGCCAATTTTGCGGGTTTGAGCTAGAGGCTGGATTTCTCCGCTT GACCCACTCCCTCCTTCTCTCTCTCTTTCCTACCTTCTCCCCTCCCTCCT TCTCTCCCTCCCTCCTTCCTTCCTTCCCTCCCTAGGGGTGGGCGGTACCG GACGTACCCGCGTTTGAAGTAGACCGTGATTGCACGACTGCCAAGGCCTG GAGGCAAGAGCACCACGAGCTGCTCGCCAAAAATAGATTGCTTTCAGGAG GAGGAGGGGAGGGGGGGAGTGGGGGAGAGGAGAGAGGAGGTGGGGGACAG GAAGGAAAGTAGGGCGCGGTAGTGGCGGAAGGGTAGCTGTGATGGGAGTA GAAAGGAGGGGGAAAGGGAGGGAGGGGGGGGGAGATAGAAGTGTACAGCC TGGATAAATGAAGATGGTCAGCGACGGCGAAGATATATGGAGGTTGAAGA AGGAGGGGAAGTGGGAGGGAGACCAAAAAGAGGCAAGAGTAGAGTAGAGT TGCGTAGATTTTGATTGGATTGGAGTGCCTGGACGTGTAAGGGGAGTTCG AGAGGTAGGAAGGAGGAGAAAAGAAAACGAGGCCGCCATGAGATGTTGGG CTGACAGATCCGAGATAGATCCTCTATATCTCATACGCT
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Coding sequence (CDS) from alignment at chr9:1014512..1017950-

>NO09G03550.5 ID=NO09G03550.5|Name=NO09G03550.5|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr9:1014512..1017950- (Nannochloropsis oceanica)
ATGGCCCCCCTAGAGGCAAGCAGCAGTCCATCCCAAGAGCATCAGCCAGC
GTTGGACAAGCACGAAGCATGGCCCGACCCAGAAGAGGAAGGCAAGGATG
GCAACTATCGCGGATACACCATGGATGTGACCGCAAGCGCAGTGGAGGAA
ATGCAAGTGGGGGAGGAGAATGTGCAATGGGCCTATCGATTGATCCAGCT
CTTGGATGCCGACACTCGTCTGTTTTTGGCGGATGGGCTGCTTCGCAAGG
TGGAGGCATTCGTAGCTACCGGTACCGGCCCCCTCTCGCAGTGGGCGCGA
CGAGTGATGGTGATACCGGAGAATGCAAAGCGCTTGGCTGAACTCCGGCG
ACGGGTGGAAGTGTGTCGACAGGCAGCGAGGGACATGCGCTCCGATGATT
GGCATCTCGCTCACACGGAAGACGGGATTGAGACGTTTTCTCGAAAGGAT
GAAGGGGACAATACATTGGCGTGGCGGACTCATGGAGAGATTGAGGATTG
CCCGGTGGTGTCCCAGCTGGCCGTTCTGCGAGAGCCGGATCACTACCACC
GATGGATTCCTCTTATGGACAAAAGCAAAGTCGTCAAGCGCCTCGGCAAG
ATCGAGCAGATGGTCTGGTTCCGGGTAGCAGGCACCGGCATCCCCTTTGT
GCGTGACGCCGTCCTCCACCTGTACGGGTGCGACGCCTCGGAGGAAAACC
TCATCATCCTGTCCGGTGCCTCCATGCCAGAGAGCGAGATAACGGACGAG
ATGGACGTGAGGCCGCCCAAGAAAAAGTGGAACCATGCGCGGGTCGATAT
CAAGTACTTCAGCATCCAGGTATCTTTCCTTCCTTCCTCCTCACTTCTCT
TCCTCCCTCCTCGCTTTCCTTTCTTCCTCCTTGCTTTTTTCCTGTTCTTT
TCGATTTCCTTCCTCCCTCGTCACTTCCCTTCCCTCCTCCTCACTTCCTC
GCTACCCTTCCTTCATCCTCACTTTCCGGTCTTCCTCCTCACCCCCTGCC
TTTCCTCCTCTTTTTCTTTTTTCCCTCCTCGCTCTCCCTCTTTCCTCCTC
ACTACCCTTCCTCGTTTTTCGCTTCCCTTCCCCCTCGCCCCGTGTTCACT
TTTCTCCCCTTCCAGAACTTTGAACGCCTCGAAGCTCATCCCCCTCCCTC
CCTCCCTCCCTCCCTCCCTTCGTGCCTGCCTGTACAGCTCAAGATCCTGT
CCCCCACGCACTGTAAGATCGACCTCATCTACAACCTGGACGTGA
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Synonyms
Publications