NO09G03540.4, NO09G03540.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03540.4
Unique NameNO09G03540.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1545
Alignment locationchr9:1012876..1014511 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1012876..1014511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03540.4 vs.
Match: EWM27458.1 (Nicotinamide N-methyltransferase, putative [Nannochloropsis gaditana])

HSP 1 Score: 250.8 bits (639), Expect = 5.500e-63
Identity = 136/192 (70.83%), Postives = 152/192 (79.17%), Query Frame = 0 
Query:   92 VGITLALLGAQVILTDLPDFLPILQHNVSTSLSSLHPATLASLPYPLLPPLIEPLTWGEALPPSRLRIYDYVIGSDITYCKEHLDELLATLTDAAPPSLPPSSSSSSSFSSSSSTGDDAVPS-PSTPS-PPFVGVVNSHTTVYIGHLERGDEHGFFERLAARGMEVVEVWKEDVGEGGVARKLWVHVFRARR 282
            VGITL LLGAQV+LTDLP FLP+L++NV+TSLSSL  +  A LP+P+LPPLIEPLTWG++LP +  R YDYVIGSDITYCKEHLD+LLATLT+  PPSLPP   S SS      TGD   PS PS+ S PP  GVV   T VYIGHLERGDEH FFERL  RGMEV EVWKEDVGEGGVARKLWVHV+R+ R
Sbjct:  110 VGITLTLLGAQVVLTDLPVFLPLLRNNVTTSLSSLSASDTACLPHPILPPLIEPLTWGQSLPLTSRRPYDYVIGSDITYCKEHLDDLLATLTEPVPPSLPPLPPSLSS------TGDTLDPSAPSSSSLPPCKGVVGPDTVVYIGHLERGDEHAFFERLRQRGMEVEEVWKEDVGEGGVARKLWVHVYRSWR 295
The following BLAST results are available for this feature:
BLAST of NO09G03540.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27458.15.500e-6370.83Nicotinamide N-methyltransferase, putative [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03540NO09G03540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03540.4NO09G03540.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03540.4.cds1NO09G03540.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03540.4 ID=NO09G03540.4|Name=NO09G03540.4|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp
ACAAGGCGTAGCGCGTAGCCAAGAGCCAAGCAAGATTGCAGGAACGGCAT
ACAGGCAGCTTCACCAAAAAATTGTCGCATGAGCTCTTCAACCTCCTCCC
TCCCTGCCAAGGCACTTCAAGCACCACCACCGCCGGTGCCCAACAACGGA
ACTAGTGACAGTGAAGACGAAGGCGATCTGCTCGAGGAGCTCTGGCCCCG
GGAGACCAAGCCCCTGCTGATGTATCAGATGACTTTCTCCAACGGCGCCT
CGGTGGACCTGCCTATTGTCCAAGACTTGATGGGACGACGATACGAAATG
GGGATTGGCAACATCGTGGTACGTATCTCGCGTTTTTCCTGTTTATCCTC
CCTCCTCTGCTACGAGATACCATTCCTCCCTCTGCTGCGTCGCTTCAAGG
GCCACTGTCTCACTCAGCATTTAGTCGCCCTGCTGTGCTATTGTCACAAT
GATAACCTCTTCATAGTTTCTTCCGCCTCCCTCCTCTTCCCCTCCTCCAA
AGTGGGACGCTGCCGTGGCTATGCACCGATTTTTCCAAGTCAAGTTCCCA
CCCGGACATTTTCAAGGGAAGACCATCTTAGAGCTCGGTAGTGGCACTGG
CTTGGGTACGTACACGAGAAACAATGTGGAGAGTGCCTCAATTGTGCGTG
CTTTTGCGTTCATTAAGAGTGTTATTTCGTGTGAGTTGCCTACCGATGCA
TCTGCTCATGTCTCGTCTCTGATTCCTTCGCTGCTCCCTGTCCATCACTC
ACCTTCTCCGTCCATCCCTCCCCTTCTTTTCATCCGCTCACCAGTCGGCA
TTACCCTTGCCCTTCTCGGCGCCCAAGTCATCCTTACCGACCTTCCAGAT
TTCCTTCCTATTCTCCAACACAATGTCTCTACCTCCCTCTCCTCCCTCCA
TCCCGCCACCCTCGCTTCCCTCCCCTACCCCCTTCTCCCCCCTCTCATCG
AGCCTCTGACTTGGGGAGAGGCCCTCCCCCCCTCTCGCCTTCGCATCTAC
GACTACGTCATTGGCTCTGACATAACGTATTGCAAGGAACACCTGGACGA
GCTCCTCGCTACGCTCACCGACGCTGCTCCTCCTTCCCTCCCTCCCTCCT
CCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCACGGGCGATGATGCC
GTACCATCTCCCTCCACCCCATCTCCTCCCTTCGTGGGTGTGGTTAACTC
ACACACCACGGTATACATCGGGCATTTGGAGCGAGGGGATGAACACGGAT
TCTTCGAAAGGCTCGCGGCAAGAGGGATGGAGGTTGTAGAGGTCTGGAAG
GAGGATGTGGGGGAGGGAGGAGTGGCGCGAAAGCTGTGGGTGCATGTGTT
TCGGGCGAGGAGGAAAGAGGGAGGAAAGGAGTACCGGGACGTGGAGGGGC
AGCTAGGCGACACTTCTTGACTGTGTAGGGCATGAAAGTATAAAATACCT
AGTGGAAAGAGAAACAGCAGGAGCAGCGGCGGCAGCACAGGAACCAAAGC
AGACCAAAGCAAAGCAAAGCACCAGGACAGGGGGCACAACACATA
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protein sequence of NO09G03540.4

>NO09G03540.4-protein ID=NO09G03540.4-protein|Name=NO09G03540.4|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MHRFFQVKFPPGHFQGKTILELGSGTGLGTYTRNNVESASIVRAFAFIKS
VISCELPTDASAHVSSLIPSLLPVHHSPSPSIPPLLFIRSPVGITLALLG
AQVILTDLPDFLPILQHNVSTSLSSLHPATLASLPYPLLPPLIEPLTWGE
ALPPSRLRIYDYVIGSDITYCKEHLDELLATLTDAAPPSLPPSSSSSSSF
SSSSSTGDDAVPSPSTPSPPFVGVVNSHTTVYIGHLERGDEHGFFERLAA
RGMEVVEVWKEDVGEGGVARKLWVHVFRARRKEGGKEYRDVEGQLGDTS*
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mRNA from alignment at chr9:1012876..1014511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03540.4 ID=NO09G03540.4|Name=NO09G03540.4|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp|location=Sequence derived from alignment at chr9:1012876..1014511+ (Nannochloropsis oceanica)
ACAAGGCGTAGCGCGTAGCCAAGAGCCAAGCAAGATTGCAGGAACGGCAT
ACAGGCAGCTTCACCAAAAAATTGTCGCATGAGCTCTTCAACCTCCTCCC
TCCCTGCCAAGGCACTTCAAGCACCACCACCGCCGGTGCCCAACAACGGA
ACTAGTGACAGTGAAGACGAAGGCGATCTGCTCGAGGAGCTCTGGCCCCG
GGAGACCAAGCCCCTGCTGATGTATCAGGTAAGCCCTGCATGCATATCCT
GCAGCTTGCGCCGCGTCTCCTCACCCTTATCCCCTGGCTTCCCCTCCATT
TCCCTCCCTCTTTCATAAGATGACTTTCTCCAACGGCGCCTCGGTGGACC
TGCCTATTGTCCAAGACTTGATGGGACGACGATACGAAATGGGGATTGGC
AACATCGTGGTACGTATCTCGCGTTTTTCCTGTTTATCCTCCCTCCTCTG
CTACGAGATACCATTCCTCCCTCTGCTGCGTCGCTTCAAGGGCCACTGTC
TCACTCAGCATTTAGTCGCCCTGCTGTGCTATTGTCACAATGATAACCTC
TTCATAGTTTCTTCCGCCTCCCTCCTCTTCCCCTCCTCCAAAGTGGGACG
CTGCCGTGGCTATGCACCGATTTTTCCAAGTCAAGTTCCCACCCGGACAT
TTTCAAGGGAAGACCATCTTAGAGCTCGGTAGTGGCACTGGCTTGGGTAC
GTACACGAGAAACAATGTGGAGAGTGCCTCAATTGTGCGTGCTTTTGCGT
TCATTAAGAGTGTTATTTCGTGTGAGTTGCCTACCGATGCATCTGCTCAT
GTCTCGTCTCTGATTCCTTCGCTGCTCCCTGTCCATCACTCACCTTCTCC
GTCCATCCCTCCCCTTCTTTTCATCCGCTCACCAGTCGGCATTACCCTTG
CCCTTCTCGGCGCCCAAGTCATCCTTACCGACCTTCCAGATTTCCTTCCT
ATTCTCCAACACAATGTCTCTACCTCCCTCTCCTCCCTCCATCCCGCCAC
CCTCGCTTCCCTCCCCTACCCCCTTCTCCCCCCTCTCATCGAGCCTCTGA
CTTGGGGAGAGGCCCTCCCCCCCTCTCGCCTTCGCATCTACGACTACGTC
ATTGGCTCTGACATAACGTATTGCAAGGAACACCTGGACGAGCTCCTCGC
TACGCTCACCGACGCTGCTCCTCCTTCCCTCCCTCCCTCCTCCTCCTCCT
CCTCCTCCTTCTCCTCCTCCTCCTCCACGGGCGATGATGCCGTACCATCT
CCCTCCACCCCATCTCCTCCCTTCGTGGGTGTGGTTAACTCACACACCAC
GGTATACATCGGGCATTTGGAGCGAGGGGATGAACACGGATTCTTCGAAA
GGCTCGCGGCAAGAGGGATGGAGGTTGTAGAGGTCTGGAAGGAGGATGTG
GGGGAGGGAGGAGTGGCGCGAAAGCTGTGGGTGCATGTGTTTCGGGCGAG
GAGGAAAGAGGGAGGAAAGGAGTACCGGGACGTGGAGGGGCAGCTAGGCG
ACACTTCTTGACTGTGTAGGGCATGAAAGTATAAAATACCTAGTGGAAAG
AGAAACAGCAGGAGCAGCGGCGGCAGCACAGGAACCAAAGCAGACCAAAG
CAAAGCAAAGCACCAGGACAGGGGGCACAACACATA
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Coding sequence (CDS) from alignment at chr9:1012876..1014511+

>NO09G03540.4 ID=NO09G03540.4|Name=NO09G03540.4|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr9:1012876..1014511+ (Nannochloropsis oceanica)
ATGCACCGATTTTTCCAAGTCAAGTTCCCACCCGGACATTTTCAAGGGAA
GACCATCTTAGAGCTCGGTAGTGGCACTGGCTTGGGTACGTACACGAGAA
ACAATGTGGAGAGTGCCTCAATTGTGCGTGCTTTTGCGTTCATTAAGAGT
GTTATTTCGTGTGAGTTGCCTACCGATGCATCTGCTCATGTCTCGTCTCT
GATTCCTTCGCTGCTCCCTGTCCATCACTCACCTTCTCCGTCCATCCCTC
CCCTTCTTTTCATCCGCTCACCAGTCGGCATTACCCTTGCCCTTCTCGGC
GCCCAAGTCATCCTTACCGACCTTCCAGATTTCCTTCCTATTCTCCAACA
CAATGTCTCTACCTCCCTCTCCTCCCTCCATCCCGCCACCCTCGCTTCCC
TCCCCTACCCCCTTCTCCCCCCTCTCATCGAGCCTCTGACTTGGGGAGAG
GCCCTCCCCCCCTCTCGCCTTCGCATCTACGACTACGTCATTGGCTCTGA
CATAACGTATTGCAAGGAACACCTGGACGAGCTCCTCGCTACGCTCACCG
ACGCTGCTCCTCCTTCCCTCCCTCCCTCCTCCTCCTCCTCCTCCTCCTTC
TCCTCCTCCTCCTCCACGGGCGATGATGCCGTACCATCTCCCTCCACCCC
ATCTCCTCCCTTCGTGGGTGTGGTTAACTCACACACCACGGTATACATCG
GGCATTTGGAGCGAGGGGATGAACACGGATTCTTCGAAAGGCTCGCGGCA
AGAGGGATGGAGGTTGTAGAGGTCTGGAAGGAGGATGTGGGGGAGGGAGG
AGTGGCGCGAAAGCTGTGGGTGCATGTGTTTCGGGCGAGGAGGAAAGAGG
GAGGAAAGGAGTACCGGGACGTGGAGGGGCAGCTAGGCGACACTTCTTGA
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Synonyms
Publications