NO09G03510.1, NO09G03510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03510.1
Unique NameNO09G03510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1560
Alignment locationchr9:1004391..1005950 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:1004391..1005950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03510.1 vs.
Match: EWM27445.1 (basic helix-loop-helix family protein [Nannochloropsis gaditana])

HSP 1 Score: 428.3 bits (1100), Expect = 3.300e-116
Identity = 234/457 (51.20%), Postives = 304/457 (66.52%), Query Frame = 0 
Query:   65 ELPVVCLALPNFGPAEAVNEALSILFECVGQFLNGPD----TSSKSTPSSSPVVLEIIVVVEEAAGRYAEKLRTLAAAIPIQ---AIAQRRVRLHLGKLAAL-KETEGAVYAQAIAVPCDRRLLPSDHPVAKTMFQKAGPVLANTAKLLYHRAEPGKVYIIKLTPSSPLRAQRGVEFVLLAMPPCQALATSLPERWQDALRRTYNELLKAFVEHVVPKAAV-RTKKQSLVDKGDTSATVLSPPVEV-EKSQGPPTLIPVYRHPGLPPQSVSWHGGLHQYLQHATALKTFIFLESPQWMFIYDGYPKAKVHLLLLSKPTFMAVSDVTKLRREEHGERLARLHVEARRIATKLEQDMPGLCLRLGYHSVPSMQPLHLHIISQEFDSSSLKTKKQWNSFTTSFFLNPAEVETALQEQGRIFVDRVNAEALLKHGLRCHGCGAGQKNMPALKQHLTCCRQV 512
            E  VV LA+PNFGPAE VN +L IL   V  FL+         S      S  VLE+ VVV+EA    A KL   A  +       I + R RLH G++ AL +ET G+ Y Q IAVPC R  LP+DHPVA   F+ AGP L NTA+LL+H+AEPG VY IKLT SS L  Q+GVE+VLLAMPPCQALA+ LP+ W ++L+ TY  L++ F+E +V K  + +   Q +  K + ++T   P ++  E+       IPVY+HPG P Q   WHG L +YL H   L+ FIF E+ +WM IYDGYPKAKVHLLL+ KP F+ ++ VT+L  ++H ++++RLH  AR IATKLE+D  GL LR+GYHS+PS++PLH+HI+SQ+FDS +LKTK+ WNSFTT FFL+  +VETALQ  G++ V   +AEALLK  LRCH CGA QK +P LKQH+  C  +
Sbjct:   35 EPAVVTLAIPNFGPAERVNASLQILTTSVANFLDSKFIVRLNESVGVLKPSKFVLEL-VVVKEAPDGDAAKLAARAGYVTRAMTCTITKPRQRLHQGEIGALTEETRGSGYPQVIAVPCSRSFLPTDHPVAMETFKNAGPQLTNTARLLFHKAEPGLVYPIKLTKSSALCVQQGVEYVLLAMPPCQALASVLPDDWSNSLQCTYETLIRVFLEQLVGKVTLPQVLPQKMDSKTEGNSTTAPPSLDKREEDHVESPHIPVYQHPGQPLQGGGWHGALIRYLDHTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGCESM 490
The following BLAST results are available for this feature:
BLAST of NO09G03510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27445.13.300e-11651.20basic helix-loop-helix family protein [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03510NO09G03510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03510.1NO09G03510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03510.1.cds1NO09G03510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03510.1 ID=NO09G03510.1|Name=NO09G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp
ATGAAAGACGCAGCAGCGGCAGCAGCACCAGCAGCATCAGCAGCGCCAGC
AGCATCAGCAGCGCCAGCAGCATCGGCAGCGCCATCATCAGCAGCATCCT
TCGATTCAAAGTCAGGCATAAAACGTCCTGCGGAAAAAAACGCCACGACC
GCCACTGCCGCTAAGCAAGGGCGTTGCGATAACGTTTGCGAAGAGCTTCC
AGTGGTGTGTTTGGCTTTGCCCAATTTTGGCCCTGCCGAGGCAGTGAACG
AGGCACTCTCGATTCTTTTCGAGTGCGTAGGTCAATTTCTCAATGGCCCT
GACACATCGTCAAAGAGCACTCCATCGTCGTCACCAGTCGTGCTTGAGAT
CATAGTGGTGGTGGAAGAAGCAGCGGGTAGATACGCGGAGAAACTCCGAA
CACTGGCCGCAGCAATCCCCATTCAAGCCATCGCGCAACGACGCGTTCGG
TTACACTTGGGAAAGCTGGCAGCGCTGAAGGAGACGGAGGGTGCTGTCTA
TGCACAAGCCATTGCTGTACCTTGCGATCGTCGCCTTTTACCATCTGATC
ACCCTGTGGCGAAAACTATGTTTCAAAAGGCGGGGCCTGTCCTTGCCAAC
ACGGCCAAGCTTCTGTATCACAGAGCCGAGCCCGGCAAGGTGTACATCAT
CAAACTGACGCCGTCAAGTCCCTTGCGCGCCCAGCGAGGAGTCGAATTTG
TGCTCTTGGCGATGCCTCCCTGTCAGGCATTGGCGACGAGCTTGCCCGAG
AGGTGGCAAGATGCATTGCGAAGAACTTATAACGAGTTGTTGAAAGCATT
TGTGGAGCATGTAGTTCCCAAGGCCGCGGTTCGGACTAAAAAGCAAAGTC
TCGTGGATAAGGGAGATACTTCAGCCACAGTACTGTCGCCGCCAGTGGAG
GTAGAAAAGAGCCAAGGTCCTCCAACGCTCATTCCTGTCTACCGTCACCC
GGGCCTGCCCCCGCAAAGTGTCAGCTGGCACGGTGGCTTACATCAGTACC
TTCAACATGCCACGGCGCTTAAGACCTTCATCTTCCTCGAGTCACCGCAA
TGGATGTTCATCTACGACGGGTACCCGAAAGCCAAGGTCCACCTCCTTTT
GCTTTCCAAGCCGACATTTATGGCTGTAAGTGATGTAACGAAACTCCGGC
GAGAGGAGCACGGGGAGAGGTTAGCTCGGTTACATGTCGAAGCACGGCGC
ATCGCCACCAAGTTGGAGCAAGACATGCCTGGTCTGTGCCTCCGACTGGG
CTATCACAGTGTGCCTTCTATGCAACCCCTCCATCTGCACATTATCTCGC
AGGAATTTGACTCTTCTTCTCTCAAGACGAAAAAGCAATGGAACAGCTTC
ACAACCTCTTTTTTCTTGAATCCAGCAGAGGTGGAGACAGCCCTGCAAGA
GCAAGGTCGAATATTCGTGGACCGGGTCAATGCAGAAGCATTGTTGAAAC
ACGGGTTACGCTGCCATGGGTGTGGTGCAGGGCAGAAGAATATGCCTGCA
CTCAAGCAGCATTTGACATGTTGTCGGCAGGTTGCACAACTGGAAACAGG
GAGCACATGA
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protein sequence of NO09G03510.1

>NO09G03510.1-protein ID=NO09G03510.1-protein|Name=NO09G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=520bp
MKDAAAAAAPAASAAPAASAAPAASAAPSSAASFDSKSGIKRPAEKNATT
ATAAKQGRCDNVCEELPVVCLALPNFGPAEAVNEALSILFECVGQFLNGP
DTSSKSTPSSSPVVLEIIVVVEEAAGRYAEKLRTLAAAIPIQAIAQRRVR
LHLGKLAALKETEGAVYAQAIAVPCDRRLLPSDHPVAKTMFQKAGPVLAN
TAKLLYHRAEPGKVYIIKLTPSSPLRAQRGVEFVLLAMPPCQALATSLPE
RWQDALRRTYNELLKAFVEHVVPKAAVRTKKQSLVDKGDTSATVLSPPVE
VEKSQGPPTLIPVYRHPGLPPQSVSWHGGLHQYLQHATALKTFIFLESPQ
WMFIYDGYPKAKVHLLLLSKPTFMAVSDVTKLRREEHGERLARLHVEARR
IATKLEQDMPGLCLRLGYHSVPSMQPLHLHIISQEFDSSSLKTKKQWNSF
TTSFFLNPAEVETALQEQGRIFVDRVNAEALLKHGLRCHGCGAGQKNMPA
LKQHLTCCRQVAQLETGST*
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mRNA from alignment at chr9:1004391..1005950+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03510.1 ID=NO09G03510.1|Name=NO09G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp|location=Sequence derived from alignment at chr9:1004391..1005950+ (Nannochloropsis oceanica)
ATGAAAGACGCAGCAGCGGCAGCAGCACCAGCAGCATCAGCAGCGCCAGC
AGCATCAGCAGCGCCAGCAGCATCGGCAGCGCCATCATCAGCAGCATCCT
TCGATTCAAAGTCAGGCATAAAACGTCCTGCGGAAAAAAACGCCACGACC
GCCACTGCCGCTAAGCAAGGGCGTTGCGATAACGTTTGCGAAGAGCTTCC
AGTGGTGTGTTTGGCTTTGCCCAATTTTGGCCCTGCCGAGGCAGTGAACG
AGGCACTCTCGATTCTTTTCGAGTGCGTAGGTCAATTTCTCAATGGCCCT
GACACATCGTCAAAGAGCACTCCATCGTCGTCACCAGTCGTGCTTGAGAT
CATAGTGGTGGTGGAAGAAGCAGCGGGTAGATACGCGGAGAAACTCCGAA
CACTGGCCGCAGCAATCCCCATTCAAGCCATCGCGCAACGACGCGTTCGG
TTACACTTGGGAAAGCTGGCAGCGCTGAAGGAGACGGAGGGTGCTGTCTA
TGCACAAGCCATTGCTGTACCTTGCGATCGTCGCCTTTTACCATCTGATC
ACCCTGTGGCGAAAACTATGTTTCAAAAGGCGGGGCCTGTCCTTGCCAAC
ACGGCCAAGCTTCTGTATCACAGAGCCGAGCCCGGCAAGGTGTACATCAT
CAAACTGACGCCGTCAAGTCCCTTGCGCGCCCAGCGAGGAGTCGAATTTG
TGCTCTTGGCGATGCCTCCCTGTCAGGCATTGGCGACGAGCTTGCCCGAG
AGGTGGCAAGATGCATTGCGAAGAACTTATAACGAGTTGTTGAAAGCATT
TGTGGAGCATGTAGTTCCCAAGGCCGCGGTTCGGACTAAAAAGCAAAGTC
TCGTGGATAAGGGAGATACTTCAGCCACAGTACTGTCGCCGCCAGTGGAG
GTAGAAAAGAGCCAAGGTCCTCCAACGCTCATTCCTGTCTACCGTCACCC
GGGCCTGCCCCCGCAAAGTGTCAGCTGGCACGGTGGCTTACATCAGTACC
TTCAACATGCCACGGCGCTTAAGACCTTCATCTTCCTCGAGTCACCGCAA
TGGATGTTCATCTACGACGGGTACCCGAAAGCCAAGGTCCACCTCCTTTT
GCTTTCCAAGCCGACATTTATGGCTGTAAGTGATGTAACGAAACTCCGGC
GAGAGGAGCACGGGGAGAGGTTAGCTCGGTTACATGTCGAAGCACGGCGC
ATCGCCACCAAGTTGGAGCAAGACATGCCTGGTCTGTGCCTCCGACTGGG
CTATCACAGTGTGCCTTCTATGCAACCCCTCCATCTGCACATTATCTCGC
AGGAATTTGACTCTTCTTCTCTCAAGACGAAAAAGCAATGGAACAGCTTC
ACAACCTCTTTTTTCTTGAATCCAGCAGAGGTGGAGACAGCCCTGCAAGA
GCAAGGTCGAATATTCGTGGACCGGGTCAATGCAGAAGCATTGTTGAAAC
ACGGGTTACGCTGCCATGGGTGTGGTGCAGGGCAGAAGAATATGCCTGCA
CTCAAGCAGCATTTGACATGTTGTCGGCAGGTTGCACAACTGGAAACAGG
GAGCACATGA
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Coding sequence (CDS) from alignment at chr9:1004391..1005950+

>NO09G03510.1 ID=NO09G03510.1|Name=NO09G03510.1|organism=Nannochloropsis oceanica|type=CDS|length=1560bp|location=Sequence derived from alignment at chr9:1004391..1005950+ (Nannochloropsis oceanica)
ATGAAAGACGCAGCAGCGGCAGCAGCACCAGCAGCATCAGCAGCGCCAGC
AGCATCAGCAGCGCCAGCAGCATCGGCAGCGCCATCATCAGCAGCATCCT
TCGATTCAAAGTCAGGCATAAAACGTCCTGCGGAAAAAAACGCCACGACC
GCCACTGCCGCTAAGCAAGGGCGTTGCGATAACGTTTGCGAAGAGCTTCC
AGTGGTGTGTTTGGCTTTGCCCAATTTTGGCCCTGCCGAGGCAGTGAACG
AGGCACTCTCGATTCTTTTCGAGTGCGTAGGTCAATTTCTCAATGGCCCT
GACACATCGTCAAAGAGCACTCCATCGTCGTCACCAGTCGTGCTTGAGAT
CATAGTGGTGGTGGAAGAAGCAGCGGGTAGATACGCGGAGAAACTCCGAA
CACTGGCCGCAGCAATCCCCATTCAAGCCATCGCGCAACGACGCGTTCGG
TTACACTTGGGAAAGCTGGCAGCGCTGAAGGAGACGGAGGGTGCTGTCTA
TGCACAAGCCATTGCTGTACCTTGCGATCGTCGCCTTTTACCATCTGATC
ACCCTGTGGCGAAAACTATGTTTCAAAAGGCGGGGCCTGTCCTTGCCAAC
ACGGCCAAGCTTCTGTATCACAGAGCCGAGCCCGGCAAGGTGTACATCAT
CAAACTGACGCCGTCAAGTCCCTTGCGCGCCCAGCGAGGAGTCGAATTTG
TGCTCTTGGCGATGCCTCCCTGTCAGGCATTGGCGACGAGCTTGCCCGAG
AGGTGGCAAGATGCATTGCGAAGAACTTATAACGAGTTGTTGAAAGCATT
TGTGGAGCATGTAGTTCCCAAGGCCGCGGTTCGGACTAAAAAGCAAAGTC
TCGTGGATAAGGGAGATACTTCAGCCACAGTACTGTCGCCGCCAGTGGAG
GTAGAAAAGAGCCAAGGTCCTCCAACGCTCATTCCTGTCTACCGTCACCC
GGGCCTGCCCCCGCAAAGTGTCAGCTGGCACGGTGGCTTACATCAGTACC
TTCAACATGCCACGGCGCTTAAGACCTTCATCTTCCTCGAGTCACCGCAA
TGGATGTTCATCTACGACGGGTACCCGAAAGCCAAGGTCCACCTCCTTTT
GCTTTCCAAGCCGACATTTATGGCTGTAAGTGATGTAACGAAACTCCGGC
GAGAGGAGCACGGGGAGAGGTTAGCTCGGTTACATGTCGAAGCACGGCGC
ATCGCCACCAAGTTGGAGCAAGACATGCCTGGTCTGTGCCTCCGACTGGG
CTATCACAGTGTGCCTTCTATGCAACCCCTCCATCTGCACATTATCTCGC
AGGAATTTGACTCTTCTTCTCTCAAGACGAAAAAGCAATGGAACAGCTTC
ACAACCTCTTTTTTCTTGAATCCAGCAGAGGTGGAGACAGCCCTGCAAGA
GCAAGGTCGAATATTCGTGGACCGGGTCAATGCAGAAGCATTGTTGAAAC
ACGGGTTACGCTGCCATGGGTGTGGTGCAGGGCAGAAGAATATGCCTGCA
CTCAAGCAGCATTTGACATGTTGTCGGCAGGTTGCACAACTGGAAACAGG
GAGCACATGA
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Synonyms
Publications