NO09G03490.1, NO09G03490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03490.1
Unique NameNO09G03490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2501
Alignment locationchr9:997267..999903 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:997267..999903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03490.1 vs.
Match: EWM27446.1 (hypothetical protein Naga_100107g4 [Nannochloropsis gaditana])

HSP 1 Score: 553.1 bits (1424), Expect = 9.400e-154
Identity = 305/508 (60.04%), Postives = 369/508 (72.64%), Query Frame = 0 
Query:   53 FLPVVVTCRRTTKTTTSRS---------AASTISGTRTRPRRRDLKVDSPVPEVPNDDEQDGDGGSGGGKKWVRIYPLGLGKYGDETAVFLGRRKEVRNLEGGRLEALPVPVFASGDLEMLVAAFRG----REGEKDGDQNS----NKFKQSVLWAGRHLATKDDGLFDNAPWEWVDK-GREGGGAEGGKGGGGEGAAAAAAAAVARAATAAAEAKKEAYNTFVFGKNLDPSKFSSPYALMLHVVREMVGAVVLELLIDEEDSPRGPGITFGPVVLLQEDPPSSSYPESAPRRKLVDCLLDEVIGLSLAQDRPIKMPLDLYDATVRIARVVGRGKD-GILQLEAAEE-EGGREGRRRDVVAVMENVKPAWEIASAEVFRNMDTQEKRLCLIKSGAEGIPKRREGPQELDLALLPFLDETVRREARIILAMERGDWKAVAVLEEGKSARGRVKDRLRKAVQEGEDAGVLAMLEEEFIRLTAAKLDPTQDEGSYQRDLDQDDWYLKNRRT 541
            FL  V TC  T  +++ R          AAST++G+RTRPRRRDLK+  P PEVP++   D D   GGGK+WVR+YPLGLG YG +TAVFLGRRKEV    GGRLEALPVPVF SGDLEML AAFR     R+ E +G QNS    ++FK S +W GRHL+TKD+G FDNAPWEW ++  RE G  E G+               +    AA   KKEA++ FVFGKN+     SSPYALMLHV+   +GA V ELLIDEEDSPRGPGITFGPV+ LQE+  ++  P    R  LVDCL+DEV+G +LA +R IKMP+DLY+ T   +RV+GRG D GILQLEA  E E   E R+ +++ VMENV+PAWEI+S E FR+MD++ KRLCLIKSGA+ IPKRR+GPQELD+ALLP+LDETVRREARI LA+ER DW  V+ LE  KS RGRVKDRLR A+ EG +A V+A LEEE++RLT AK+DPTQDEGSYQ+DLDQDDWYL++RRT
Sbjct:   33 FLIQVHTCSTTNPSSSLRIGFTRKACLVAASTLTGSRTRPRRRDLKIGKPRPEVPDEAGDDDDSEGGGGKRWVRVYPLGLGSYGGQTAVFLGRRKEVEKENGGRLEALPVPVFTSGDLEMLQAAFREAERRRKTEAEGLQNSRGSKSQFKASSMWTGRHLSTKDNGFFDNAPWEWAERMAREAG--ESGQ---------------SVPTVAATNVKKEAFDAFVFGKNVRADWTSSPYALMLHVITRALGAAVSELLIDEEDSPRGPGITFGPVLTLQEEVGTA--PSEQGRAMLVDCLIDEVVGFALALNRAIKMPVDLYEGTAVASRVLGRGSDDGILQLEAVGEGEEAAERRKENMMTVMENVRPAWEISSVEAFRSMDSRSKRLCLIKSGADAIPKRRQGPQELDIALLPYLDETVRREARIALAVEREDWSTVSALEANKSERGRVKDRLRAALAEG-NAAVVARLEEEYVRLTVAKMDPTQDEGSYQKDLDQDDWYLRSRRT 520
The following BLAST results are available for this feature:
BLAST of NO09G03490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27446.19.400e-15460.04hypothetical protein Naga_100107g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03490NO09G03490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03490.1NO09G03490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03490.1.cds1NO09G03490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03490.1.cds2NO09G03490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03490.1 ID=NO09G03490.1|Name=NO09G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2501bp
TGGTGCGCGTCCTCGTGTGTCTGTAAGAGTGCAGGAAAGGAGGGAGAGTT
AAAAAGGGGGAGCGAAGCAAGAAGCAGGACATATCAGCACTATTAGGTGT
TCATCATCGCTTCCGCAGTTAAAAAGCGGGAGAGGATTCACAACGCGCAC
CATATGTCCCTCTACATCAGGCGTGGGGAAGGATTCACAAAATTCATGGT
GTATGAGGTTATCCTGCCTAAACGCCTCTAGGCCACACATGGGTGCGACC
GGCACAATCCTACCACCCTCTGCTTCTTCATCTTTTCTCGCTAGAAGAAG
CGAGTAGTAAAATTGTGATATTGCACTTCTGTACTCGCATGCCCCCTCAT
TCAATGCCTCAAAAGCAGGCATTTGTGAGAATAAGTGGTGAGTAGATGGG
CACAAACATGGTCCGCTCGTTCGCAATGCCAAATAAAACGAAAAGCCAGA
TCAGAGGGTCGCAATAGTTCCCGAGGAGGCTTCTGCCACTCGGGAGACAG
TATATGGTCAAGGTGTACGTCTCCCTCTCAGTCTGGCAACAGAGCTTCAA
CGACTCCTCGAGCCGTCGCTCAAGAACACCTTGGAAAGAAAAGTCAGACG
AACCATCCCCACAAACACACAGACTGCAGGACTAACTCATCGATAAACAT
GCCTGCCGCCTTGTCTCTATCGCGATGCCGACCGCATGGTCAAATCATCG
AGGTGCCAAGCCGTGTTCTGCTCCTGCATTTTTTCCTTCTCCTCCTCCTC
CACCTGGTCAGCCTCTGCTACTCTCGACCATGTGTGCCATCGTCTTGTCC
ATGCTTTTTGCCCGTTGTCGTTACTTGCAGGCGTACCACTAAAACCACCA
CCAGTCGCTCCGCCGCGAGCACGATCAGCGGCACGCGGACCCGTCCTCGT
CGCCGCGACCTGAAGGTCGACTCACCCGTGCCCGAGGTGCCCAACGATGA
CGAACAAGACGGGGATGGAGGAAGTGGAGGAGGGAAGAAGTGGGTGCGTA
TCTACCCGTTGGGACTCGGGAAATATGGCGACGAGACGGCAGTCTTCTTG
GGGCGGAGGAAAGAGGTGCGGAATCTGGAAGGGGGAAGATTAGAAGCCTT
GCCAGTGCCTGTCTTTGCGTCCGGCGACCTGGAGATGCTGGTGGCGGCCT
TCCGAGGGCGGGAGGGAGAAAAAGATGGAGACCAAAATAGCAATAAATTT
AAGCAGTCAGTACTATGGGCGGGGCGGCACCTGGCGACAAAGGACGACGG
GTTATTTGACAATGCTCCTTGGGAATGGGTAGACAAAGGCAGGGAAGGAG
GAGGAGCAGAAGGAGGAAAAGGAGGAGGAGGAGAAGGAGCAGCAGCAGCA
GCAGCAGCAGCAGTGGCGAGGGCAGCCACAGCCGCTGCAGAGGCGAAGAA
GGAAGCGTACAACACTTTTGTATTCGGGAAAAATTTGGACCCTTCCAAGT
TCTCCTCTCCCTACGCATTGATGCTGCATGTTGTGCGGGAAATGGTCGGA
GCGGTGGTGCTGGAGCTGCTAATTGATGAGGAAGATAGTCCGCGAGGACC
GGGTATTACGTTTGGGCCGGTCGTTTTGCTGCAAGAAGATCCACCTTCTT
CTTCTTATCCTGAAAGTGCCCCTCGGAGAAAGCTCGTAGACTGCCTTTTG
GATGAGGTTATCGGCCTGTCCCTCGCCCAAGATCGTCCCATCAAGATGCC
TCTGGACCTGTATGACGCCACTGTCCGTATCGCACGCGTGGTAGGAAGGG
GTAAAGACGGCATCCTGCAGCTGGAAGCTGCTGAAGAGGAGGGAGGGAGG
GAGGGAAGGAGGAGGGACGTGGTAGCGGTGATGGAGAACGTGAAACCGGC
GTGGGAGATTGCGTCGGCTGAAGTATTCCGAAATATGGACACCCAAGAGA
AACGGCTCTGCTTGATCAAAAGTGGGGCGGAGGGAATACCAAAGAGAAGG
GAGGGGCCGCAGGAGCTCGATCTTGCCCTTCTTCCGTTCTTGGATGAAAC
GGTGCGGAGAGAGGCGAGAATCATCCTGGCGATGGAGAGAGGGGACTGGA
AAGCAGTCGCAGTTCTGGAGGAGGGAAAGAGTGCGAGGGGTCGAGTGAAG
GATCGGTTGAGGAAAGCCGTGCAGGAGGGGGAAGACGCAGGTGTGCTTGC
CATGTTGGAGGAGGAGTTCATACGGCTGACAGCTGCCAAGCTCGATCCGA
CGCAAGACGAAGGGAGTTATCAGAGGGATCTGGATCAGGATGATTGGTAT
TTGAAAAATAGACGGACCTAGTGTAGGAGGATGTCGTAATATAGAAGAAG
TCGTGGTAGTAGTATCATCCCTTTGGACGTAATGATAATGGTAAAGATGG
GGAAGGTCGGCCATTGACTTCCTCCTCTCTTCCAGGGGTGGAGGAGGATA
AGGGGGGATAGAGGTAGGGTCTGTGTTATTATTGGGATTTGTACAGTCGA
AAGGAGAAGACACAATGCAAAATGGTATGGGAGCCCCGAAAAAAATGCAT
A
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protein sequence of NO09G03490.1

>NO09G03490.1-protein ID=NO09G03490.1-protein|Name=NO09G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MPAALSLSRCRPHGQIIEVPSRVLLLHFFLLLLLHLVSLCYSRPCVPSSC
PCFLPVVVTCRRTTKTTTSRSAASTISGTRTRPRRRDLKVDSPVPEVPND
DEQDGDGGSGGGKKWVRIYPLGLGKYGDETAVFLGRRKEVRNLEGGRLEA
LPVPVFASGDLEMLVAAFRGREGEKDGDQNSNKFKQSVLWAGRHLATKDD
GLFDNAPWEWVDKGREGGGAEGGKGGGGEGAAAAAAAAVARAATAAAEAK
KEAYNTFVFGKNLDPSKFSSPYALMLHVVREMVGAVVLELLIDEEDSPRG
PGITFGPVVLLQEDPPSSSYPESAPRRKLVDCLLDEVIGLSLAQDRPIKM
PLDLYDATVRIARVVGRGKDGILQLEAAEEEGGREGRRRDVVAVMENVKP
AWEIASAEVFRNMDTQEKRLCLIKSGAEGIPKRREGPQELDLALLPFLDE
TVRREARIILAMERGDWKAVAVLEEGKSARGRVKDRLRKAVQEGEDAGVL
AMLEEEFIRLTAAKLDPTQDEGSYQRDLDQDDWYLKNRRT*
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mRNA from alignment at chr9:997267..999903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03490.1 ID=NO09G03490.1|Name=NO09G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2637bp|location=Sequence derived from alignment at chr9:997267..999903+ (Nannochloropsis oceanica)
TGGTGCGCGTCCTCGTGTGTCTGTAAGAGTGCAGGAAAGGAGGGAGAGTT
AAAAAGGGGGAGCGAAGCAAGAAGCAGGACATATCAGCACTATTAGGTGT
TCATCATCGCTTCCGCAGTTAAAAAGCGGGAGAGGATTCACAACGCGCAC
CATATGTCCCTCTACATCAGGCGTGGGGAAGGATTCACAAAATTCATGGT
GTATGAGGTTATCCTGCCTAAACGCCTCTAGGCCACACATGGGTGCGACC
GGCACAATCCTACCACCCTCTGCTTCTTCATCTTTTCTCGCTAGAAGAAG
CGAGTAGTAAAATTGTGATATTGCACTTCTGTACTCGCATGCCCCCTCAT
TCAATGCCTCAAAAGCAGGCATTTGTGAGAATAAGTGGTGAGTAGATGGG
CACAAACATGGTCCGCTCGTTCGCAATGCCAAATAAAACGAAAAGCCAGA
TCAGAGGGTCGCAATAGTTCCCGAGGAGGCTTCTGCCACTCGGGAGACAG
TATATGGTCAAGGTGTACGTCTCCCTCTCAGTCTGGCAACAGAGCTTCAA
CGACTCCTCGAGCCGTCGCTCAAGAACACCTTGGAAAGAAAAGTCAGACG
AACCATCCCCACAAACACACAGACTGCAGGACTAACTCATCGATAAACAT
GCCTGCCGCCTTGTCTCTATCGCGATGCCGACCGCATGGTCAAATCATCG
AGGTGCCAAGCCGTGTTCTGCTCCTGCATTTTTTCCTTCTCCTCCTCCTC
CACCTGGTCAGCCTCTGCTACTCTCGACCATGTGTGCCATCGTCTTGTCC
ATGCTTTTTGCCCGTTGTCGTTACTTGCAGGCGTACCACTAAAACCACCA
CCAGTCGCTCCGCCGCGAGCACGATCAGCGGCACGCGGACCCGTCCTCGT
CGCCGCGACCTGAAGGTCGACTCACCCGTGCCCGAGGTGCCCAACGATGA
CGAACAAGACGGGGATGGAGGAAGTGGAGGAGGGAAGAAGTGGGTGCGTA
TCTACCCGTTGGGACTCGGGAAATATGGCGACGAGACGGCAGTCTTCTTG
GGGCGGAGGAAAGAGGTGCGGAATCTGGAAGGGGGAAGATTAGAAGCCTT
GCCAGTGCCTGTCTTTGCGTCCGGCGACCTGGAGATGCTGGTGGCGGCCT
TCCGAGGGCGGGAGGGAGAAAAAGATGGAGACCAAAATAGCAATAAATTT
AAGCAGTCAGTACTATGGGCGGGGCGGCACCTGGCGACAAAGGACGACGG
GTTATTTGACAATGCTCCTTGGGAATGGGTAGACAAAGGCAGGGAAGGAG
GAGGAGCAGAAGGAGGAAAAGGAGGAGGAGGAGAAGGAGCAGCAGCAGCA
GCAGCAGCAGCAGTGGCGAGGGCAGCCACAGCCGCTGCAGAGGCGAAGAA
GGAAGCGTACAACACTTTTGTATTCGGGAAAAATTTGGACCCTTCCAAGT
TCTCCTCTCCCTACGCATTGATGCTGCATGTTGTGCGGGAAATGGTCGGA
GCGGTGGTGCTGGAGCTGCTAATTGATGAGGAAGATAGTCCGCGAGGACC
GGGTATTACGTTTGGGCCGGTCGTTTTGCTGCAAGAAGATGTAAGTCCAG
GGGAAAGACCAAGCTGTCTTCAGGTGGTATGACTCTCCTCTCAATTCTAC
ATCTTACTCTTTCCTGCCTCCCTCCTCTTCTCCCTTCCTCCCCTGCCTTC
CCCCTCCACTTCCTATCTACCAACAGCCACCTTCTTCTTCTTATCCTGAA
AGTGCCCCTCGGAGAAAGCTCGTAGACTGCCTTTTGGATGAGGTTATCGG
CCTGTCCCTCGCCCAAGATCGTCCCATCAAGATGCCTCTGGACCTGTATG
ACGCCACTGTCCGTATCGCACGCGTGGTAGGAAGGGGTAAAGACGGCATC
CTGCAGCTGGAAGCTGCTGAAGAGGAGGGAGGGAGGGAGGGAAGGAGGAG
GGACGTGGTAGCGGTGATGGAGAACGTGAAACCGGCGTGGGAGATTGCGT
CGGCTGAAGTATTCCGAAATATGGACACCCAAGAGAAACGGCTCTGCTTG
ATCAAAAGTGGGGCGGAGGGAATACCAAAGAGAAGGGAGGGGCCGCAGGA
GCTCGATCTTGCCCTTCTTCCGTTCTTGGATGAAACGGTGCGGAGAGAGG
CGAGAATCATCCTGGCGATGGAGAGAGGGGACTGGAAAGCAGTCGCAGTT
CTGGAGGAGGGAAAGAGTGCGAGGGGTCGAGTGAAGGATCGGTTGAGGAA
AGCCGTGCAGGAGGGGGAAGACGCAGGTGTGCTTGCCATGTTGGAGGAGG
AGTTCATACGGCTGACAGCTGCCAAGCTCGATCCGACGCAAGACGAAGGG
AGTTATCAGAGGGATCTGGATCAGGATGATTGGTATTTGAAAAATAGACG
GACCTAGTGTAGGAGGATGTCGTAATATAGAAGAAGTCGTGGTAGTAGTA
TCATCCCTTTGGACGTAATGATAATGGTAAAGATGGGGAAGGTCGGCCAT
TGACTTCCTCCTCTCTTCCAGGGGTGGAGGAGGATAAGGGGGGATAGAGG
TAGGGTCTGTGTTATTATTGGGATTTGTACAGTCGAAAGGAGAAGACACA
ATGCAAAATGGTATGGGAGCCCCGAAAAAAATGCATA
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Coding sequence (CDS) from alignment at chr9:997267..999903+

>NO09G03490.1 ID=NO09G03490.1|Name=NO09G03490.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr9:997267..999903+ (Nannochloropsis oceanica)
ATGCCTGCCGCCTTGTCTCTATCGCGATGCCGACCGCATGGTCAAATCAT
CGAGGTGCCAAGCCGTGTTCTGCTCCTGCATTTTTTCCTTCTCCTCCTCC
TCCACCTGGTCAGCCTCTGCTACTCTCGACCATGTGTGCCATCGTCTTGT
CCATGCTTTTTGCCCGTTGTCGTTACTTGCAGGCGTACCACTAAAACCAC
CACCAGTCGCTCCGCCGCGAGCACGATCAGCGGCACGCGGACCCGTCCTC
GTCGCCGCGACCTGAAGGTCGACTCACCCGTGCCCGAGGTGCCCAACGAT
GACGAACAAGACGGGGATGGAGGAAGTGGAGGAGGGAAGAAGTGGGTGCG
TATCTACCCGTTGGGACTCGGGAAATATGGCGACGAGACGGCAGTCTTCT
TGGGGCGGAGGAAAGAGGTGCGGAATCTGGAAGGGGGAAGATTAGAAGCC
TTGCCAGTGCCTGTCTTTGCGTCCGGCGACCTGGAGATGCTGGTGGCGGC
CTTCCGAGGGCGGGAGGGAGAAAAAGATGGAGACCAAAATAGCAATAAAT
TTAAGCAGTCAGTACTATGGGCGGGGCGGCACCTGGCGACAAAGGACGAC
GGGTTATTTGACAATGCTCCTTGGGAATGGGTAGACAAAGGCAGGGAAGG
AGGAGGAGCAGAAGGAGGAAAAGGAGGAGGAGGAGAAGGAGCAGCAGCAG
CAGCAGCAGCAGCAGTGGCGAGGGCAGCCACAGCCGCTGCAGAGGCGAAG
AAGGAAGCGTACAACACTTTTGTATTCGGGAAAAATTTGGACCCTTCCAA
GTTCTCCTCTCCCTACGCATTGATGCTGCATGTTGTGCGGGAAATGGTCG
GAGCGGTGGTGCTGGAGCTGCTAATTGATGAGGAAGATAGTCCGCGAGGA
CCGGGTATTACGTTTGGGCCGGTCGTTTTGCTGCAAGAAGATCCACCTTC
TTCTTCTTATCCTGAAAGTGCCCCTCGGAGAAAGCTCGTAGACTGCCTTT
TGGATGAGGTTATCGGCCTGTCCCTCGCCCAAGATCGTCCCATCAAGATG
CCTCTGGACCTGTATGACGCCACTGTCCGTATCGCACGCGTGGTAGGAAG
GGGTAAAGACGGCATCCTGCAGCTGGAAGCTGCTGAAGAGGAGGGAGGGA
GGGAGGGAAGGAGGAGGGACGTGGTAGCGGTGATGGAGAACGTGAAACCG
GCGTGGGAGATTGCGTCGGCTGAAGTATTCCGAAATATGGACACCCAAGA
GAAACGGCTCTGCTTGATCAAAAGTGGGGCGGAGGGAATACCAAAGAGAA
GGGAGGGGCCGCAGGAGCTCGATCTTGCCCTTCTTCCGTTCTTGGATGAA
ACGGTGCGGAGAGAGGCGAGAATCATCCTGGCGATGGAGAGAGGGGACTG
GAAAGCAGTCGCAGTTCTGGAGGAGGGAAAGAGTGCGAGGGGTCGAGTGA
AGGATCGGTTGAGGAAAGCCGTGCAGGAGGGGGAAGACGCAGGTGTGCTT
GCCATGTTGGAGGAGGAGTTCATACGGCTGACAGCTGCCAAGCTCGATCC
GACGCAAGACGAAGGGAGTTATCAGAGGGATCTGGATCAGGATGATTGGT
ATTTGAAAAATAGACGGACCTAG
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Synonyms
Publications