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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr9 | genome | chr9:988726..991123 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03450.1 vs.
Match: EWM27452.1 (soluble nsf attachment protein gamma isoform [Nannochloropsis gaditana]) HSP 1 Score: 457.2 bits (1175), Expect = 8.200e-125 Identity = 256/406 (63.05%), Postives = 312/406 (76.85%), Query Frame = 0
Query: 55 MSKFSNDRNALFAKS-DTRGAPAP-PRVAGPSSTFTTPTVGASSSRLTSARQSTLPSHRGN--ALPPPKRMNLEKLKEAEEWRLKASKMLKTSLFGNWQPDHLSAAPYFDKAAALYKAAGAVEQSKNAYVQCAECNEKTSTYAAAAMAYKNASQMAKEDDDEGVAAEFLAREADMWVLHGDSGRAADSLVKAGVVVEDSSPSKAVEYCMQAIDFLMPDHGDPMELAKAPLANDVFSKSLTLCLRNEKISDALKVCRKAGGVLAAQGLNSSLFKMYCTETILQLYLGDVVAADKAFMEVHLQHSGYLRAIECECAEDLLTAAKAMDGPALAETVNKLSRAYLDNAVIRIARRLSVDRISGGLGGEGDEEDEAEGE-----GGLSFVRTLPQNPGPGSSTSPSDGAAL 452
MS FS+DR+ALFAKS D +G+ + P G +STFTTP+ SS+ L+S R + L S+R A PKRMNLEKLKEAE+WR+KA K LKTSLFGNWQPD+LSAAPYFDKAA+LYKAAGA EQ+K AY++ AECNEKTSTYAAAAMAY+NA+Q+AK +++E A E LAREADMWVL GD GRAADSLVKAGV VED+ P +AV YC+Q + +L PD G+ ++L APLA+DV S+SL LCLRNE++ AL + KAG VL AQGL SSL+KMYCT T+LQLY+GDVVAADK F+EVHLQ SGY+R++ECECAE+LL+AAK + AL V+ LSRAYLDN+V++ ARRL+VDRISGGLGGE +EE+E E E GG PQ+ G G S S + L
Sbjct: 1 MSTFSSDRSALFAKSTDGKGSKSTSPNRPGTTSTFTTPSARGSST-LSSTRHTPLSSYRTGDVAAAVPKRMNLEKLKEAEQWRVKAVKTLKTSLFGNWQPDYLSAAPYFDKAASLYKAAGAEEQAKAAYMKSAECNEKTSTYAAAAMAYRNAAQIAKVEEEEEAAGELLAREADMWVLQGDVGRAADSLVKAGVQVEDACPKQAVAYCLQGVSWLAPDQGESVDLRSAPLASDVLSRSLNLCLRNEQVHPALDISDKAGRVLRAQGLTSSLYKMYCTTTVLQLYIGDVVAADKTFLEVHLQDSGYIRSVECECAENLLSAAKGLSRTALEGAVHALSRAYLDNSVLKFARRLTVDRISGGLGGEEEEEEEEEEEKEGRNGG-------PQHGGMGPSLSAPEAPLL 398
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03450.1 ID=NO09G03450.1|Name=NO09G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2162bp
ATGAACATTCCCACAGGGAGATTCAGGCCGCATTTGAACCCACGCAAAGA
CAAGCGGACCCCTCCGCTTCGGGCCTCGTCTGAACCCATCGATCAAGGTC
AAGAAGCAAAGGACACCACCCCAACTGCGACCCTGCCCCTCACCTACGCC
ATCGCTGCATCCATGAGCAAATTTTCCAATGATCGCAATGCACTTTTTGC
CAAAAGCGACACCAGAGGCGCTCCTGCGCCCCCTCGAGTCGCCGGTCCTA
GCAGCACATTTACAACGCCCACCGTAGGGGCGAGTTCTTCCAGGCTCACT
TCTGCGCGGCAGTCCACCTTGCCCTCTCACCGTGGGAATGCTCTACCTCC
CCCTAAGCGAATGAATCTCGAGAAGCTCAAGGAAGCGGAGGAATGGCGTC
TGAAAGCAAGCAAGATGCTCAAGACCTCCCTCTTTGGAAATTGGCAACCA
GATCATCTTTCCGCGGCGCCGTACTTCGATAAGGCCGCCGCATTGTACAA
GGCGGCGGGGGCGGTGGAGCAGAGTAAGAATGCATATGTGCAGTGTGCGG
AATGTAATGAGAAGACAAGCACGTATGCAGCTGCAGCTATGGCCTATAAA
AACGCTTCGCAAATGGCCAAGGAAGATGACGATGAGGGGGTAGCTGCAGA
ATTCCTTGCACGGGAAGCTGACATGTGGGTGTTGCATGGGGATTCGGGCC
GGGCGGCTGACTCTTTGGTCAAAGCGGGGGTAGTGGTGGAAGACTCTTCG
CCCAGCAAGGCGGTAGAGTACTGTATGCAGGCCATTGACTTCTTGATGCC
CGATCACGGAGACCCGATGGAGCTCGCAAAGGCCCCTCTGGCCAATGACG
TGTTTAGCAAGTCCCTCACTCTCTGCTTGCGAAACGAGAAGATTTCGGAT
GCCCTGAAGGTGTGTAGGAAAGCTGGGGGGGTCCTCGCCGCTCAAGGGCT
AAACTCCTCCTTGTTTAAAATGTACTGCACGGAGACCATCCTCCAACTGT
ATCTTGGCGATGTTGTTGCGGCGGATAAGGCGTTTATGGAGGTGCATTTG
CAGCACTCCGGGTACTTAAGGGCCATAGAGTGTGAGTGCGCCGAGGACTT
GCTGACGGCTGCCAAGGCGATGGATGGGCCGGCGTTGGCGGAAACGGTGA
ATAAATTGTCAAGGGCGTATTTAGACAATGCCGTCATCCGAATCGCGAGG
AGGTTGAGTGTAGACCGGATTTCAGGTGGGCTGGGGGGGGAGGGTGATGA
GGAGGACGAGGCTGAGGGGGAGGGAGGGCTGAGTTTTGTTCGGACTCTTC
CTCAGAACCCCGGACCGGGATCCTCTACGTCTCCCTCTGATGGTGCTGCT
TTGTCCACACGTCCTGCTCCATCCTCTCCTCCCTCCTCCGTGCAGCCATC
TTGGGCGAATGCCTCCGCGTCTTCCGCTTTCTGTTTCCCCGCCCCTGGCC
TTTCTCCTCCTCCTGCGGTGGTCGTGGAGGAAGATGTGTCGCGGCCCCGT
GGCCTGAGCAGCAGCAGCCAAGATGGTTTGATGGATCTTTCCGACCTGCA
AGCAGGGCTTGAGGAAGCGGATGAAAGGGAGGAATGCAAGAGGAAGGAAG
GGGAGGAGGAGGACGAGTTGGACACAGCCATCCGTGAGGCGAAGGCGGCG
GCGCATCACGCGTCATGGGAGGGCCATAGGCGTGCTACTGCACCATCAGT
ACCAAAAAAAGCAGTAGCAGGTACAACAGCAGCATCTCCAGCACAGGGAG
ATGAAACAAAGGCTGCCGCAAACGCGGTGTCTGCAACAACCAACCCATTC
GCAGTTGAGGACGAGGATGAGGGTGAGGTAGAGGAGGAGGTGGGAAAGGA
AGGTGGGGTGATGGGCGTGGATGAGGTGGAAGAGGATGACTTTGACTTGC
GTTAGAAGAGAGCAAGGGTAGTGTGCAGTAGGTGTGAGGTTGTAGTTTTA
GCGGTAGACTTCAGTGTAGAGGCCTTTAGGGAGGGGTTGTGGGAAGTGGT
GACGCAAAGAAGAGGAGGAGGAATAGTGAGAGGTGTGTGTTGACAGTTGA
TGGGGAAATAGAGAGGAAAAGAAGGAAGTGAAACAAGCACAGCAGTATTG
TTGTTATCACATTATCATCAGTAAGAAAAGAAGATGACAAAGTTCAGGAG
GGAAACAGTTGG back to topprotein sequence of NO09G03450.1 >NO09G03450.1-protein ID=NO09G03450.1-protein|Name=NO09G03450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MNIPTGRFRPHLNPRKDKRTPPLRASSEPIDQGQEAKDTTPTATLPLTYA
IAASMSKFSNDRNALFAKSDTRGAPAPPRVAGPSSTFTTPTVGASSSRLT
SARQSTLPSHRGNALPPPKRMNLEKLKEAEEWRLKASKMLKTSLFGNWQP
DHLSAAPYFDKAAALYKAAGAVEQSKNAYVQCAECNEKTSTYAAAAMAYK
NASQMAKEDDDEGVAAEFLAREADMWVLHGDSGRAADSLVKAGVVVEDSS
PSKAVEYCMQAIDFLMPDHGDPMELAKAPLANDVFSKSLTLCLRNEKISD
ALKVCRKAGGVLAAQGLNSSLFKMYCTETILQLYLGDVVAADKAFMEVHL
QHSGYLRAIECECAEDLLTAAKAMDGPALAETVNKLSRAYLDNAVIRIAR
RLSVDRISGGLGGEGDEEDEAEGEGGLSFVRTLPQNPGPGSSTSPSDGAA
LSTRPAPSSPPSSVQPSWANASASSAFCFPAPGLSPPPAVVVEEDVSRPR
GLSSSSQDGLMDLSDLQAGLEEADEREECKRKEGEEEDELDTAIREAKAA
AHHASWEGHRRATAPSVPKKAVAGTTAASPAQGDETKAAANAVSATTNPF
AVEDEDEGEVEEEVGKEGGVMGVDEVEEDDFDLR* back to topmRNA from alignment at chr9:988726..991123- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03450.1 ID=NO09G03450.1|Name=NO09G03450.1|organism=Nannochloropsis oceanica|type=mRNA|length=2398bp|location=Sequence derived from alignment at chr9:988726..991123- (Nannochloropsis oceanica)
ATGAACATTCCCACAGGGAGATTCAGGCCGCATTTGAACCCACGCAAAGA
CAAGCGGACCCCTCCGCTTCGGGCCTCGTCTGAACCCATCGATCAAGGTC
AAGAAGCAAAGGACACCACCCCAACTGCGACCCTGCCCCTCACCTACGCC
ATCGCTGCATCCATGAGCAAATTTTCCAATGATCGCAATGCACTTTTTGC
CAAAAGCGACACCAGAGGCGCTCCTGCGGTGCGTCTTCGCCCTTATTCAG
TCTCTCTCGCGCCCTCCTTCCTCCCCCTTTCCATTCTTGTCCGTCGTCCA
GAATCAAATTATATCACAAGCCCTTCGCACAAAAAATTATAAGTACACGC
GCTGCATCCATTTTTATACCGGGGCCTATTGTCAAACAAAAGGATGGAGT
GCAATTTCGATCCACGCGAGCGGGATGCTCACTCTTCCCTTATCTTTCTC
AACCTGACCCACAGCCCCCTCGAGTCGCCGGTCCTAGCAGCACATTTACA
ACGCCCACCGTAGGGGCGAGTTCTTCCAGGCTCACTTCTGCGCGGCAGTC
CACCTTGCCCTCTCACCGTGGGAATGCTCTACCTCCCCCTAAGCGAATGA
ATCTCGAGAAGCTCAAGGAAGCGGAGGAATGGCGTCTGAAAGCAAGCAAG
ATGCTCAAGACCTCCCTCTTTGGAAATTGGCAACCAGATCATCTTTCCGC
GGCGCCGTACTTCGATAAGGCCGCCGCATTGTACAAGGCGGCGGGGGCGG
TGGAGCAGAGTAAGAATGCATATGTGCAGTGTGCGGAATGTAATGAGAAG
ACAAGCACGTATGCAGCTGCAGCTATGGCCTATAAAAACGCTTCGCAAAT
GGCCAAGGAAGATGACGATGAGGGGGTAGCTGCAGAATTCCTTGCACGGG
AAGCTGACATGTGGGTGTTGCATGGGGATTCGGGCCGGGCGGCTGACTCT
TTGGTCAAAGCGGGGGTAGTGGTGGAAGACTCTTCGCCCAGCAAGGCGGT
AGAGTACTGTATGCAGGCCATTGACTTCTTGATGCCCGATCACGGAGACC
CGATGGAGCTCGCAAAGGCCCCTCTGGCCAATGACGTGTTTAGCAAGTCC
CTCACTCTCTGCTTGCGAAACGAGAAGATTTCGGATGCCCTGAAGGTGTG
TAGGAAAGCTGGGGGGGTCCTCGCCGCTCAAGGGCTAAACTCCTCCTTGT
TTAAAATGTACTGCACGGAGACCATCCTCCAACTGTATCTTGGCGATGTT
GTTGCGGCGGATAAGGCGTTTATGGAGGTGCATTTGCAGCACTCCGGGTA
CTTAAGGGCCATAGAGTGTGAGTGCGCCGAGGACTTGCTGACGGCTGCCA
AGGCGATGGATGGGCCGGCGTTGGCGGAAACGGTGAATAAATTGTCAAGG
GCGTATTTAGACAATGCCGTCATCCGAATCGCGAGGAGGTTGAGTGTAGA
CCGGATTTCAGGTGGGCTGGGGGGGGAGGGTGATGAGGAGGACGAGGCTG
AGGGGGAGGGAGGGCTGAGTTTTGTTCGGACTCTTCCTCAGAACCCCGGA
CCGGGATCCTCTACGTCTCCCTCTGATGGTGCTGCTTTGTCCACACGTCC
TGCTCCATCCTCTCCTCCCTCCTCCGTGCAGCCATCTTGGGCGAATGCCT
CCGCGTCTTCCGCTTTCTGTTTCCCCGCCCCTGGCCTTTCTCCTCCTCCT
GCGGTGGTCGTGGAGGAAGATGTGTCGCGGCCCCGTGGCCTGAGCAGCAG
CAGCCAAGATGGTTTGATGGATCTTTCCGACCTGCAAGCAGGGCTTGAGG
AAGCGGATGAAAGGGAGGAATGCAAGAGGAAGGAAGGGGAGGAGGAGGAC
GAGTTGGACACAGCCATCCGTGAGGCGAAGGCGGCGGCGCATCACGCGTC
ATGGGAGGGCCATAGGCGTGCTACTGCACCATCAGTACCAAAAAAAGCAG
TAGCAGGTACAACAGCAGCATCTCCAGCACAGGGAGATGAAACAAAGGCT
GCCGCAAACGCGGTGTCTGCAACAACCAACCCATTCGCAGTTGAGGACGA
GGATGAGGGTGAGGTAGAGGAGGAGGTGGGAAAGGAAGGTGGGGTGATGG
GCGTGGATGAGGTGGAAGAGGATGACTTTGACTTGCGTTAGAAGAGAGCA
AGGGTAGTGTGCAGTAGGTGTGAGGTTGTAGTTTTAGCGGTAGACTTCAG
TGTAGAGGCCTTTAGGGAGGGGTTGTGGGAAGTGGTGACGCAAAGAAGAG
GAGGAGGAATAGTGAGAGGTGTGTGTTGACAGTTGATGGGGAAATAGAGA
GGAAAAGAAGGAAGTGAAACAAGCACAGCAGTATTGTTGTTATCACATTA
TCATCAGTAAGAAAAGAAGATGACAAAGTTCAGGAGGGAAACAGTTGG back to topCoding sequence (CDS) from alignment at chr9:988726..991123- >NO09G03450.1 ID=NO09G03450.1|Name=NO09G03450.1|organism=Nannochloropsis oceanica|type=CDS|length=1905bp|location=Sequence derived from alignment at chr9:988726..991123- (Nannochloropsis oceanica)
ATGAACATTCCCACAGGGAGATTCAGGCCGCATTTGAACCCACGCAAAGA
CAAGCGGACCCCTCCGCTTCGGGCCTCGTCTGAACCCATCGATCAAGGTC
AAGAAGCAAAGGACACCACCCCAACTGCGACCCTGCCCCTCACCTACGCC
ATCGCTGCATCCATGAGCAAATTTTCCAATGATCGCAATGCACTTTTTGC
CAAAAGCGACACCAGAGGCGCTCCTGCGCCCCCTCGAGTCGCCGGTCCTA
GCAGCACATTTACAACGCCCACCGTAGGGGCGAGTTCTTCCAGGCTCACT
TCTGCGCGGCAGTCCACCTTGCCCTCTCACCGTGGGAATGCTCTACCTCC
CCCTAAGCGAATGAATCTCGAGAAGCTCAAGGAAGCGGAGGAATGGCGTC
TGAAAGCAAGCAAGATGCTCAAGACCTCCCTCTTTGGAAATTGGCAACCA
GATCATCTTTCCGCGGCGCCGTACTTCGATAAGGCCGCCGCATTGTACAA
GGCGGCGGGGGCGGTGGAGCAGAGTAAGAATGCATATGTGCAGTGTGCGG
AATGTAATGAGAAGACAAGCACGTATGCAGCTGCAGCTATGGCCTATAAA
AACGCTTCGCAAATGGCCAAGGAAGATGACGATGAGGGGGTAGCTGCAGA
ATTCCTTGCACGGGAAGCTGACATGTGGGTGTTGCATGGGGATTCGGGCC
GGGCGGCTGACTCTTTGGTCAAAGCGGGGGTAGTGGTGGAAGACTCTTCG
CCCAGCAAGGCGGTAGAGTACTGTATGCAGGCCATTGACTTCTTGATGCC
CGATCACGGAGACCCGATGGAGCTCGCAAAGGCCCCTCTGGCCAATGACG
TGTTTAGCAAGTCCCTCACTCTCTGCTTGCGAAACGAGAAGATTTCGGAT
GCCCTGAAGGTGTGTAGGAAAGCTGGGGGGGTCCTCGCCGCTCAAGGGCT
AAACTCCTCCTTGTTTAAAATGTACTGCACGGAGACCATCCTCCAACTGT
ATCTTGGCGATGTTGTTGCGGCGGATAAGGCGTTTATGGAGGTGCATTTG
CAGCACTCCGGGTACTTAAGGGCCATAGAGTGTGAGTGCGCCGAGGACTT
GCTGACGGCTGCCAAGGCGATGGATGGGCCGGCGTTGGCGGAAACGGTGA
ATAAATTGTCAAGGGCGTATTTAGACAATGCCGTCATCCGAATCGCGAGG
AGGTTGAGTGTAGACCGGATTTCAGGTGGGCTGGGGGGGGAGGGTGATGA
GGAGGACGAGGCTGAGGGGGAGGGAGGGCTGAGTTTTGTTCGGACTCTTC
CTCAGAACCCCGGACCGGGATCCTCTACGTCTCCCTCTGATGGTGCTGCT
TTGTCCACACGTCCTGCTCCATCCTCTCCTCCCTCCTCCGTGCAGCCATC
TTGGGCGAATGCCTCCGCGTCTTCCGCTTTCTGTTTCCCCGCCCCTGGCC
TTTCTCCTCCTCCTGCGGTGGTCGTGGAGGAAGATGTGTCGCGGCCCCGT
GGCCTGAGCAGCAGCAGCCAAGATGGTTTGATGGATCTTTCCGACCTGCA
AGCAGGGCTTGAGGAAGCGGATGAAAGGGAGGAATGCAAGAGGAAGGAAG
GGGAGGAGGAGGACGAGTTGGACACAGCCATCCGTGAGGCGAAGGCGGCG
GCGCATCACGCGTCATGGGAGGGCCATAGGCGTGCTACTGCACCATCAGT
ACCAAAAAAAGCAGTAGCAGGTACAACAGCAGCATCTCCAGCACAGGGAG
ATGAAACAAAGGCTGCCGCAAACGCGGTGTCTGCAACAACCAACCCATTC
GCAGTTGAGGACGAGGATGAGGGTGAGGTAGAGGAGGAGGTGGGAAAGGA
AGGTGGGGTGATGGGCGTGGATGAGGTGGAAGAGGATGACTTTGACTTGC
GTTAG back to top
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