NO09G03420.1, NO09G03420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03420.1
Unique NameNO09G03420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2608
Alignment locationchr9:980950..983897 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:980950..983897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03420.1 vs.
Match: CBJ25558.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 198.0 bits (502), Expect = 8.300e-47
Identity = 123/326 (37.73%), Postives = 185/326 (56.75%), Query Frame = 0 
Query:   60 PDFYSQRRTTQLRPAVFSLVNTVVGGGTLSLAYSFQKAGTVIGTLCLALVCLATDFTLFAMISASRRTGEKSYEGVMKAAFGTPVQLLTIFLVFSICFLTPVAYLILLRGLLTPLVEAYI--THGQPLSFLAKQLLICGLALFLTP-LTLTSVGTIGALAIFSMAAIVILALVLGLRSYQCLYTNGLPSPSLLPSLPPSLPSLLSALPVFVASFLCHFNLLPVYSELRFPTRDRAHSLIHFTMGSTFILYTFVGLLGWAYAVCRDNEASEGGKEGEGGEEGEVPDNLLLSFPSNDPLVNVARAALVVVLSFCFPLLLIPCRDALIR 383
            P F+S++R   +  AV +L+ T++GGG LSL ++ +++G V G + L L   ATDFT+F ++S SRR+G  SYE V   AFG   +LL + LV  + +L  V Y ILLR LL PL E  +  T G P    A+ LL+  L + + P  TL ++  +  L+  S+ A+ +L + +GLR+ +C  + G+P+ ++           L A+P+++ +F CHFN+LPV+ EL  PTR+R H L+H+T+G     Y  V  LG+ Y VC                 G V DN+L +F ++D L+NV R  L V L   FPLL +P    L+R
Sbjct:   11 PHFFSEKRQGTVTGAVATLLGTLLGGGVLSLPFALRRSGVVFGAILLLLTAFATDFTVFTLVSCSRRSGGSSYESVADVAFGRRAKLLCMALVVCVTYLPLVGYTILLRDLLAPLAEVALNRTLGSP----ARNLLVSALVVLIYPACTLRTLTALRHLSFLSVLAVSLLTVFIGLRAGECAASVGVPASAVNLWPEDGWSGALQAIPIYICAFGCHFNVLPVHGELAKPTRERLHRLVHWTIGLVTAFYALVMTLGYTYGVC----------------TGGVSDNILNNFSTDDTLMNVGRVGLAVTLLVSFPLLTVPLIGTLVR 316
The following BLAST results are available for this feature:
BLAST of NO09G03420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ25558.18.300e-4737.73conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03420NO09G03420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03420.1NO09G03420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03420.1.cds1NO09G03420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03420.1.cds2NO09G03420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03420.1.cds3NO09G03420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03420.1 ID=NO09G03420.1|Name=NO09G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp
TTTTTTCCTCGGAATGTGTCCTGTAGTGGAGCACGGAGGGAGGAGTGTGA
GGTGGCTCCGATGACAATAGTGATGCACGTGCCTTTCGGAGGGCAGTATC
GTGCCCTATCTTGCCATTATGCTTACGCCAGGAATTTGTGCCAAGGCAAG
CTTGATAAAGGGATGCAGGAGATGTGAGGGATTGACGCTTTGAAGGTTTG
TGGTCATGGCAAAAATTGAATGTAGTTCCTCTCGCCTCGCCTCTCGCCAA
CCTCAACGCCCTCAAGAAAAAAAACAAATACTGCCGCCCAGACAAACCCA
CGTGCCCCCCCACACAGGCTACAGGTCGATACGCACGTCAAACATCTCGT
CCTGGCCATCCTGGTACTGTGAGCGTACACCACGATCCTCCCTCTTTCCT
CCCTGCACTCCCTGCCTTATTTCAAGCAGGCTCCCATACAGCATCTAAAG
CCAGGAAATGCAGACCTTCTCCACTAGCATTCGGACCAATAGCACGGGCA
GCACCACCGCCCCCAACCACAACGATTACAGATCTGTCCAAAACGCGCCC
AGTCCCCGGTTGGTCTCCGAGCATGCGGCAGCTGAGGCGGAGCGGGAGGA
GGAAGAGTGTCGGCAGCTCCACGGGCTTAACGGACCAGACTTTTATTCCC
AGCGACGTACCACCCAGTTGCGTCCCGCTGTCTTTTCCTTGGTTAACACT
GTCGTCGGCGGTGGCACTCTCTCCCTTGCCTACTCCTTCCAAAAAGCCGG
CACTGTGATAGGCACGCTTTGTCTCGCTCTCGTCTGCCTCGCCACGGATT
TCACCCTCTTTGCAATGATCTCGGCCAGTCGGCGGACGGGGGAGAAGAGC
TATGAGGGGGTTATGAAAGCTGCTTTTGGCACCCCTGTGCAACTGCTGAC
CATCTTCCTTGTCTTCTCCATCTGCTTCCTCACCCCTGTCGCCTACCTCA
TACTCCTTCGCGGCCTCCTGACACCCCTCGTCGAGGCCTATATCACGCAC
GGCCAGCCCTTGTCCTTCCTGGCGAAGCAACTCCTCATCTGCGGCCTCGC
CCTCTTCCTCACCCCCCTGACCCTCACCAGCGTCGGCACTATCGGGGCAC
TAGCCATCTTCTCAATGGCCGCCATCGTCATCCTCGCCCTCGTCCTCGGT
CTCCGCTCCTACCAATGCCTCTACACCAACGGTCTTCCCTCCCCCTCCCT
CCTCCCCTCCCTCCCCCCCTCCCTCCCCTCCCTCCTCTCCGCCCTGCCCG
TCTTCGTCGCCTCATTCCTCTGTCACTTTAACCTCCTCCCGGTCTATTCC
GAGTTGCGTTTCCCGACCCGAGACCGAGCTCATTCCCTCATCCATTTCAC
TATGGGCAGTACCTTCATACTGTACACCTTCGTGGGCCTCCTCGGTTGGG
CCTACGCCGTCTGCCGCGACAACGAAGCGAGTGAGGGAGGAAAGGAGGGC
GAGGGAGGGGAGGAGGGGGAGGTACCGGATAATCTTCTCCTGTCATTCCC
TTCGAATGACCCCTTAGTGAACGTGGCCCGGGCGGCGTTGGTTGTCGTAC
TGTCCTTCTGTTTCCCCCTCTTGTTGATCCCCTGCAGGGATGCATTAATC
CGACTGGTAGGGGTGGTGATGGTGGAGTGGAAGGGCGGGCGGGCGGGAGG
GAGGGAGGGAGGGCGGGGAGAAGGAAGGGGGGCCAAGACCCCGTTATTGG
GCGGGGGGGGCGTGGAGGAGGGGGAGGAGGGGGAGCGAGGAAGGGAATTC
CAACGGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGGAGG
AGGAGCAGGAGGAGGTGAGAGGCCGGATGATGATGCCCATGGAAGAAGCA
TCAAGGCCGCAGCCTCCGCCGCCTCCCTCCCTCCTCCTCCCCCCCTCAAC
CCCGGGCAAGCAGAACAAGCAGACCAAGAACAAGGAAGGCCCCGCTGGCT
TCCTTCTCTCCTCCTCACCTACCTCCTCGTCCTCTTCATCCTGTCCGTCG
CCGTCCAAGTCGACTCAGTGGCAACCATATGGGCCGTACTCGGCTCGTTT
GCGTGCTTTGCCGTCTCCTTCATCCTCCCTCCTCTGGCCTACTTAAAGGT
AGGTTGTCCACGGCAGAAGATTAAGCGGCTCTGGGCATGGGTGATATGTG
TGGTGGGGATGGTCATGATGGCTGCCTGCACGGTTCAGACGATTGGAGAC
CTGTTGGAGGTCTAAGGGAGCCAGCTGCTCCCTCCCTCCCTTCCTCCCTT
CCTCCATCTCTTCCTAGGGTCGTGGTGAAAGGCTCTGAAGAGCGAGGAGA
AGAGTGTGTATAGAATGGGAGGATGGAGAGACGGGACGGGGGAAGGGAGG
GATGGAATCGAAATGGAAAATTATACAGAGGAGACAGGGAGAGAGGAAGG
GAAGGAGAAAAGGAGGGAGGAGAGGGAGGGAGTTAGATGACTCGTGTTGT
TGATGACCAAATCGAGCCATGTTCATAAGGCACATGACAAAAAAGAGAAT
GAAAGTGAGACTGATGCACATAGAAAGAAAGAAGAAAAAGAAGGAGAAAC
ATGGCAAGAAAAATCAAGGAAAGAGGGATGGAGAGAGGGGAGGAAGAAGA
GGAGCGAA
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protein sequence of NO09G03420.1

>NO09G03420.1-protein ID=NO09G03420.1-protein|Name=NO09G03420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MQTFSTSIRTNSTGSTTAPNHNDYRSVQNAPSPRLVSEHAAAEAEREEEE
CRQLHGLNGPDFYSQRRTTQLRPAVFSLVNTVVGGGTLSLAYSFQKAGTV
IGTLCLALVCLATDFTLFAMISASRRTGEKSYEGVMKAAFGTPVQLLTIF
LVFSICFLTPVAYLILLRGLLTPLVEAYITHGQPLSFLAKQLLICGLALF
LTPLTLTSVGTIGALAIFSMAAIVILALVLGLRSYQCLYTNGLPSPSLLP
SLPPSLPSLLSALPVFVASFLCHFNLLPVYSELRFPTRDRAHSLIHFTMG
STFILYTFVGLLGWAYAVCRDNEASEGGKEGEGGEEGEVPDNLLLSFPSN
DPLVNVARAALVVVLSFCFPLLLIPCRDALIRLVGVVMVEWKGGRAGGRE
GGRGEGRGAKTPLLGGGGVEEGEEGERGREFQREGGGGGGGGGRREGGGA
GGGERPDDDAHGRSIKAAASAASLPPPPPLNPGQAEQADQEQGRPRWLPS
LLLTYLLVLFILSVAVQVDSVATIWAVLGSFACFAVSFILPPLAYLKVGC
PRQKIKRLWAWVICVVGMVMMAACTVQTIGDLLEV*
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mRNA from alignment at chr9:980950..983897+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03420.1 ID=NO09G03420.1|Name=NO09G03420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2948bp|location=Sequence derived from alignment at chr9:980950..983897+ (Nannochloropsis oceanica)
TTTTTTCCTCGGAATGTGTCCTGTAGTGGAGCACGGAGGGAGGAGTGTGA
GGTGGCTCCGATGACAATAGTGATGCACGTGCCTTTCGGAGGGCAGTATC
GTGCCCTATCTTGCCATTATGCTTACGCCAGGAATTTGTGCCAAGGCAAG
CTTGATAAAGGGATGCAGGAGATGTGAGGGATTGACGCTTTGAAGGTTTG
TGGTCATGGCAAAAATTGAATGTAGTTCCTCTCGCCTCGCCTCTCGCCAA
CCTCAACGCCCTCAAGAAAAAAAACAAATACTGCCGCCCAGACAAACCCA
CGTGCCCCCCCACACAGGCTACAGGTCGATACGCACGTCAAACATCTCGT
CCTGGCCATCCTGGTACTGTGAGCGTACACCACGATCCTCCCTCTTTCCT
CCCTGCACTCCCTGCCTTATTTCAAGCAGGCTCCCATACAGCATCTAAAG
CCAGGAAATGCAGACCTTCTCCACTAGCATTCGGACCAATAGCACGGGCA
GCACCACCGCCCCCAACCACAACGATTACAGATCTGTCCAAAACGCGCCC
AGTCCCCGGTTGGTCTCCGAGCATGCGGCAGCTGAGGCGGAGCGGGAGGA
GGAAGAGTGTCGGCAGCTCCACGGGCTTAACGGACCAGACTTTTATTCCC
AGCGACGTACCACCCAGTTGCGTCCCGCTGTCTTTTCCTTGGTTAACACT
GTCGTCGGCGGTGGCACTCTCTCCCTTGCCTACTCCTTCCAAAAAGCCGG
CACTGTGATAGGCACGCTTTGTCTCGCTCTCGTCTGCCTCGCCACGGATT
TCACCCTCTTTGCAATGATCTCGGCCAGTCGGCGGACGGGGGAGAAGAGC
TATGAGGGGGTTATGAAAGCTGGTGCGTAAGGGGGGATGGAAGGGAATAA
AGAAATGGGGTAACGGTCAGCCATTGTTCTTATTTCTCATTCTCCCTCCA
TCCCTTCATCCCTTCCTCCCTCCTTTCTTCCCTCCCTCCTCTCCCAAGCT
TTTGGCACCCCTGTGCAACTGCTGACCATCTTCCTTGTCTTCTCCATCTG
CTTCCTCACCCCTGTCGCCTACCTCATACTCCTTCGCGGCCTCCTGACAC
CCCTCGTCGAGGCCTATATCACGCACGGCCAGGTACGTCCCTTCCCTTCC
TTCCTCCCTCCCTTTGCCTTTTCCTTTTCCGCACCAGCCTTCCTTCCTCC
CGCCCTACTTTCCCCCCCTCTTAGTTTCTCATACCTCCGTCACCACCATC
CCTCCATCCCTCCCTGCCTTCCTCCCCCACCACCATCCCTCCCTCCTTCC
CTCACTCTCTCACTCCTTCCCTCCCTGCCTCCCTCCCTTCCTCCAGCCCT
TGTCCTTCCTGGCGAAGCAACTCCTCATCTGCGGCCTCGCCCTCTTCCTC
ACCCCCCTGACCCTCACCAGCGTCGGCACTATCGGGGCACTAGCCATCTT
CTCAATGGCCGCCATCGTCATCCTCGCCCTCGTCCTCGGTCTCCGCTCCT
ACCAATGCCTCTACACCAACGGTCTTCCCTCCCCCTCCCTCCTCCCCTCC
CTCCCCCCCTCCCTCCCCTCCCTCCTCTCCGCCCTGCCCGTCTTCGTCGC
CTCATTCCTCTGTCACTTTAACCTCCTCCCGGTCTATTCCGAGTTGCGTT
TCCCGACCCGAGACCGAGCTCATTCCCTCATCCATTTCACTATGGGCAGT
ACCTTCATACTGTACACCTTCGTGGGCCTCCTCGGTTGGGCCTACGCCGT
CTGCCGCGACAACGAAGCGAGTGAGGGAGGAAAGGAGGGCGAGGGAGGGG
AGGAGGGGGAGGTACCGGATAATCTTCTCCTGTCATTCCCTTCGAATGAC
CCCTTAGTGAACGTGGCCCGGGCGGCGTTGGTTGTCGTACTGTCCTTCTG
TTTCCCCCTCTTGTTGATCCCCTGCAGGGATGCATTAATCCGACTGGTAG
GGGTGGTGATGGTGGAGTGGAAGGGCGGGCGGGCGGGAGGGAGGGAGGGA
GGGCGGGGAGAAGGAAGGGGGGCCAAGACCCCGTTATTGGGCGGGGGGGG
CGTGGAGGAGGGGGAGGAGGGGGAGCGAGGAAGGGAATTCCAACGGGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGGAGGAGGAGCAGGA
GGAGGTGAGAGGCCGGATGATGATGCCCATGGAAGAAGCATCAAGGCCGC
AGCCTCCGCCGCCTCCCTCCCTCCTCCTCCCCCCCTCAACCCCGGGCAAG
CAGAACAAGCAGACCAAGAACAAGGAAGGCCCCGCTGGCTTCCTTCTCTC
CTCCTCACCTACCTCCTCGTCCTCTTCATCCTGTCCGTCGCCGTCCAAGT
CGACTCAGTGGCAACCATATGGGCCGTACTCGGCTCGTTTGCGTGCTTTG
CCGTCTCCTTCATCCTCCCTCCTCTGGCCTACTTAAAGGTAGGTTGTCCA
CGGCAGAAGATTAAGCGGCTCTGGGCATGGGTGATATGTGTGGTGGGGAT
GGTCATGATGGCTGCCTGCACGGTTCAGACGATTGGAGACCTGTTGGAGG
TCTAAGGGAGCCAGCTGCTCCCTCCCTCCCTTCCTCCCTTCCTCCATCTC
TTCCTAGGGTCGTGGTGAAAGGCTCTGAAGAGCGAGGAGAAGAGTGTGTA
TAGAATGGGAGGATGGAGAGACGGGACGGGGGAAGGGAGGGATGGAATCG
AAATGGAAAATTATACAGAGGAGACAGGGAGAGAGGAAGGGAAGGAGAAA
AGGAGGGAGGAGAGGGAGGGAGTTAGATGACTCGTGTTGTTGATGACCAA
ATCGAGCCATGTTCATAAGGCACATGACAAAAAAGAGAATGAAAGTGAGA
CTGATGCACATAGAAAGAAAGAAGAAAAAGAAGGAGAAACATGGCAAGAA
AAATCAAGGAAAGAGGGATGGAGAGAGGGGAGGAAGAAGAGGAGCGAA
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Coding sequence (CDS) from alignment at chr9:980950..983897+

>NO09G03420.1 ID=NO09G03420.1|Name=NO09G03420.1|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at chr9:980950..983897+ (Nannochloropsis oceanica)
ATGCAGACCTTCTCCACTAGCATTCGGACCAATAGCACGGGCAGCACCAC
CGCCCCCAACCACAACGATTACAGATCTGTCCAAAACGCGCCCAGTCCCC
GGTTGGTCTCCGAGCATGCGGCAGCTGAGGCGGAGCGGGAGGAGGAAGAG
TGTCGGCAGCTCCACGGGCTTAACGGACCAGACTTTTATTCCCAGCGACG
TACCACCCAGTTGCGTCCCGCTGTCTTTTCCTTGGTTAACACTGTCGTCG
GCGGTGGCACTCTCTCCCTTGCCTACTCCTTCCAAAAAGCCGGCACTGTG
ATAGGCACGCTTTGTCTCGCTCTCGTCTGCCTCGCCACGGATTTCACCCT
CTTTGCAATGATCTCGGCCAGTCGGCGGACGGGGGAGAAGAGCTATGAGG
GGGTTATGAAAGCTGCTTTTGGCACCCCTGTGCAACTGCTGACCATCTTC
CTTGTCTTCTCCATCTGCTTCCTCACCCCTGTCGCCTACCTCATACTCCT
TCGCGGCCTCCTGACACCCCTCGTCGAGGCCTATATCACGCACGGCCAGC
CCTTGTCCTTCCTGGCGAAGCAACTCCTCATCTGCGGCCTCGCCCTCTTC
CTCACCCCCCTGACCCTCACCAGCGTCGGCACTATCGGGGCACTAGCCAT
CTTCTCAATGGCCGCCATCGTCATCCTCGCCCTCGTCCTCGGTCTCCGCT
CCTACCAATGCCTCTACACCAACGGTCTTCCCTCCCCCTCCCTCCTCCCC
TCCCTCCCCCCCTCCCTCCCCTCCCTCCTCTCCGCCCTGCCCGTCTTCGT
CGCCTCATTCCTCTGTCACTTTAACCTCCTCCCGGTCTATTCCGAGTTGC
GTTTCCCGACCCGAGACCGAGCTCATTCCCTCATCCATTTCACTATGGGC
AGTACCTTCATACTGTACACCTTCGTGGGCCTCCTCGGTTGGGCCTACGC
CGTCTGCCGCGACAACGAAGCGAGTGAGGGAGGAAAGGAGGGCGAGGGAG
GGGAGGAGGGGGAGGTACCGGATAATCTTCTCCTGTCATTCCCTTCGAAT
GACCCCTTAGTGAACGTGGCCCGGGCGGCGTTGGTTGTCGTACTGTCCTT
CTGTTTCCCCCTCTTGTTGATCCCCTGCAGGGATGCATTAATCCGACTGG
TAGGGGTGGTGATGGTGGAGTGGAAGGGCGGGCGGGCGGGAGGGAGGGAG
GGAGGGCGGGGAGAAGGAAGGGGGGCCAAGACCCCGTTATTGGGCGGGGG
GGGCGTGGAGGAGGGGGAGGAGGGGGAGCGAGGAAGGGAATTCCAACGGG
AAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGGAGGAGGAGCA
GGAGGAGGTGAGAGGCCGGATGATGATGCCCATGGAAGAAGCATCAAGGC
CGCAGCCTCCGCCGCCTCCCTCCCTCCTCCTCCCCCCCTCAACCCCGGGC
AAGCAGAACAAGCAGACCAAGAACAAGGAAGGCCCCGCTGGCTTCCTTCT
CTCCTCCTCACCTACCTCCTCGTCCTCTTCATCCTGTCCGTCGCCGTCCA
AGTCGACTCAGTGGCAACCATATGGGCCGTACTCGGCTCGTTTGCGTGCT
TTGCCGTCTCCTTCATCCTCCCTCCTCTGGCCTACTTAAAGGTAGGTTGT
CCACGGCAGAAGATTAAGCGGCTCTGGGCATGGGTGATATGTGTGGTGGG
GATGGTCATGATGGCTGCCTGCACGGTTCAGACGATTGGAGACCTGTTGG
AGGTCTAA
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Synonyms
Publications