NO09G03380.1, NO09G03380.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G03380.1
Unique Name	NO09G03380.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2247
Alignment location	chr9:976241..978487 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:976241..978487 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO09G03380.1 vs.
Match: EWM27481.1 (tho complex subunit [Nannochloropsis gaditana])

HSP 1 Score: 406.8 bits (1044), Expect = 1.500e-109
Identity = 232/344 (67.44%), Postives = 269/344 (78.20%), Query Frame = 0

Query:   15 GDAEAALTQLEECIRTNYRKGASGLAVVRDLASAVATAEAGKPVAQDTDLVEVAFRAVLVGLVRESLAGRQDLLDEEKFGMRALLDLALGLAQGGGGE---GTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEALFALFKVARKSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPSAINKGGASNVGNKTVYEDSDEFARQEERLAEKKRRDEELRAAVEG-GGKAKDEEEQQEPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQAFEGFTVNQDSAAASAVKGGVAAVGKKVGKAGGEEGEGKEGERME-GKAEGEGKE 354
            GDAE A+ +LEECIR NY KG +G  VVR+ A  VA AEA +PV+ DTDL+EVAFRAVL G+V+E L   +D+LDEEKFG+RALLDLAL LAQ G  E   G GLRSVFFLLED+FE LGVEQIQ FWPEVE RE ALF LFK ARKSNLTMLKLCNSLLRKLSK HNTAICGRIMMYLSRNWELSDPSAINKGG +N+ NKT +E+ ++FARQ+ R AEK RRDEELR AVEG GGK   EE  +EPIDYSLY+TFWGLQE +S+P R++QS++AW  F+  AK VLQAFEGFTV+++ A A+ + G   A     G+ GGEEG G+ GER E G  + E KE
Sbjct:   14 GDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE-AVATLLNGEEGA-----GEEGGEEG-GRMGERTEIGPRQRERKE 350

The following BLAST results are available for this feature:

BLAST of NO09G03380.1 vs.

BLAST of NO09G03380.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27481.1	1.500e-109	67.44	tho complex subunit [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G03380	NO09G03380	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G03380.1	NO09G03380.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G03380.1.cds1	NO09G03380.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:976241..978487+
coding sequence from alignment at chr9:976241..978487+

mRNA sequence

>NO09G03380.1 ID=NO09G03380.1|Name=NO09G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp
ATGCCTAAAGCAGCAGCTGCACCAGCACCAATCGTCACCACGGGCGATGC
CGAGGCAGCCTTGACCCAGCTGGAAGAATGCATCCGCACCAATTACCGAA
AGGGAGCGTCGGGCTTGGCCGTGGTGCGGGACCTGGCTTCGGCGGTGGCG
ACCGCAGAAGCAGGCAAACCAGTTGCCCAAGACACGGACTTGGTGGAGGT
GGCGTTTCGAGCAGTGCTGGTCGGTTTGGTGCGGGAGTCCTTGGCGGGAA
GGCAGGATCTGCTGGATGAGGAGAAGTTTGGAATGCGGGCATTATTGGAC
TTGGCATTGGGATTAGCGCAAGGAGGAGGGGGAGAAGGCACGGGGCTACG
AAGCGTATTTTTCTTACTGGAGGACGTGTTTGAATTTCTGGGTGTGGAGC
AGATCCAAACTTTTTGGCCGGAGGTGGAAGCGAGAGAGGAGGCGTTGTTT
GCGCTTTTCAAGGTGGCTCGCAAGAGTAATCTGACGATGCTGAAGCTCTG
TAACTCCCTCTTGCGGAAATTGTCAAAGAGCCACAACACGGCTATTTGTG
GTCGCATCATGATGTACCTGTCGAGGAATTGGGAGCTGAGTGACCCCTCG
GCCATCAACAAAGGAGGGGCGTCAAACGTGGGGAATAAGACGGTGTACGA
GGACAGTGATGAGTTTGCACGGCAAGAAGAAAGGCTGGCGGAGAAGAAGA
GGAGAGACGAGGAGCTTCGTGCGGCAGTGGAAGGTGGGGGGAAGGCGAAG
GATGAAGAGGAGCAACAGGAGCCGATTGATTACTCATTGTATCAGACGTT
TTGGGGATTACAGGAAGATTTAAGTGAGCCGACACGGGTGATGCAGAGCG
ATGACGCTTGGAGGGAGTTTGTGGGGAAGGCCAAGGAGGTGCTGCAGGCC
TTCGAGGGGTTTACGGTCAATCAGGACTCAGCCGCGGCCTCAGCAGTCAA
GGGGGGAGTGGCAGCGGTTGGGAAGAAGGTGGGGAAAGCAGGAGGAGAGG
AGGGGGAGGGTAAGGAAGGGGAGAGGATGGAGGGGAAGGCAGAGGGAGAG
GGAAAGGAAGTGCCGATGCCGGAGGAGGAGGTGGAGGGGGAGGAAGAGGG
GGAGGAGAGGGGGGACGAGGAGGAAGCGAGCTCGACAGAGGGGTCTAAAA
AGAAACGAAGCCGAAAGAGCGTCAAGCCTTCCTCCTCCTCTTCCTCCACC
ACTATCTCCCGCAGCCTTCGCCCTCAACACCAGCACCAGGAGCAGGAGGA
CGAGAAGGATGAAGAGGGCACGGCCTACCTGGGTTGCAAATATCTAACCA
ACAGTCGCCTCTTCCGCCTGCAACTGCACGACCCCCTCGTCCGTGTCCAA
GTCCTGTCCCAGCTCCTCATCCTTCTCAATTACGTTTCCGCCTCTGCTGC
CCTCTCAGCCATTTCCTCCCTCCCTCCCTCCTCGTCCTCCACTACCACGC
CAACCACCACCTCCACACCTCCTACCTCAAGCAAACCGGGCGCAATCGAG
ATAACCAAGCATGCCCGCCGCCTGATCCGCTCCACACCCACCCACGGCAG
CACCTACCTCGCCACCCTTGACACCGTCCTGGACCGTGAAAAGGCGTGGT
TGGCGTGGAAAAAACTGCAGCGGTGCGAGCCCAAGATCGAGAAACCTCGT
GCCCCACCTGCCAAGGCTACCCGGACGTTGGACGAGGTCAAGAAGGCTCT
GGCCGTGGCAGGAAAGCCTACCTTGGTTGTTGCGCAGCAACAGCGGACGT
TTTATGGAAGGGCGCTTCCCTTGCCGAGGCCGGTGGATTTGGATGCGATC
GAGGCGGAAGTTGGGAGGGAGGGAGGGCGGACGTGGGAGACTTATGTGAA
GCCGAGGATGGAGGAGGCGGAAGATCCTGAGGCTTGCATCGATGAGGAAT
ATCACCCACGGCATGAGCCCGTGTTCTGCTGGCGGGCATTGAGGTTGGCG
TGGGTTGCGGATGTGAAGTCGGTGGTGGGGCTTAAAAGTGGGGGCCTCGA
CGGCATTTGGAGGAGGATGACAGGGAAAGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTTGTAGAAGATATGGAAGAGGGGGGTGAGAAGGACAAAGTGGTG
AAAGAAGAAGAGGAGGAGGGCAAGAAAAAAAAGAGGAAGCGGAAGGGGGG
GGCTGAGGGAAAAGAGGGCGAAGAGGATGAAGAGGAGGTGGCTAATGCGG
AGGCGATGGAGGTGGAGACGCCGGGGATGAATGGAGAAGAAGCATAG

protein sequence of NO09G03380.1

>NO09G03380.1-protein ID=NO09G03380.1-protein|Name=NO09G03380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=749bp
MPKAAAAPAPIVTTGDAEAALTQLEECIRTNYRKGASGLAVVRDLASAVA
TAEAGKPVAQDTDLVEVAFRAVLVGLVRESLAGRQDLLDEEKFGMRALLD
LALGLAQGGGGEGTGLRSVFFLLEDVFEFLGVEQIQTFWPEVEAREEALF
ALFKVARKSNLTMLKLCNSLLRKLSKSHNTAICGRIMMYLSRNWELSDPS
AINKGGASNVGNKTVYEDSDEFARQEERLAEKKRRDEELRAAVEGGGKAK
DEEEQQEPIDYSLYQTFWGLQEDLSEPTRVMQSDDAWREFVGKAKEVLQA
FEGFTVNQDSAAASAVKGGVAAVGKKVGKAGGEEGEGKEGERMEGKAEGE
GKEVPMPEEEVEGEEEGEERGDEEEASSTEGSKKKRSRKSVKPSSSSSST
TISRSLRPQHQHQEQEDEKDEEGTAYLGCKYLTNSRLFRLQLHDPLVRVQ
VLSQLLILLNYVSASAALSAISSLPPSSSSTTTPTTTSTPPTSSKPGAIE
ITKHARRLIRSTPTHGSTYLATLDTVLDREKAWLAWKKLQRCEPKIEKPR
APPAKATRTLDEVKKALAVAGKPTLVVAQQQRTFYGRALPLPRPVDLDAI
EAEVGREGGRTWETYVKPRMEEAEDPEACIDEEYHPRHEPVFCWRALRLA
WVADVKSVVGLKSGGLDGIWRRMTGKEEEEEEEEEVVEDMEEGGEKDKVV
KEEEEEGKKKKRKRKGGAEGKEGEEDEEEVANAEAMEVETPGMNGEEA*

mRNA from alignment at chr9:976241..978487+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G03380.1 ID=NO09G03380.1|Name=NO09G03380.1|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at chr9:976241..978487+ (Nannochloropsis oceanica)
ATGCCTAAAGCAGCAGCTGCACCAGCACCAATCGTCACCACGGGCGATGC
CGAGGCAGCCTTGACCCAGCTGGAAGAATGCATCCGCACCAATTACCGAA
AGGGAGCGTCGGGCTTGGCCGTGGTGCGGGACCTGGCTTCGGCGGTGGCG
ACCGCAGAAGCAGGCAAACCAGTTGCCCAAGACACGGACTTGGTGGAGGT
GGCGTTTCGAGCAGTGCTGGTCGGTTTGGTGCGGGAGTCCTTGGCGGGAA
GGCAGGATCTGCTGGATGAGGAGAAGTTTGGAATGCGGGCATTATTGGAC
TTGGCATTGGGATTAGCGCAAGGAGGAGGGGGAGAAGGCACGGGGCTACG
AAGCGTATTTTTCTTACTGGAGGACGTGTTTGAATTTCTGGGTGTGGAGC
AGATCCAAACTTTTTGGCCGGAGGTGGAAGCGAGAGAGGAGGCGTTGTTT
GCGCTTTTCAAGGTGGCTCGCAAGAGTAATCTGACGATGCTGAAGCTCTG
TAACTCCCTCTTGCGGAAATTGTCAAAGAGCCACAACACGGCTATTTGTG
GTCGCATCATGATGTACCTGTCGAGGAATTGGGAGCTGAGTGACCCCTCG
GCCATCAACAAAGGAGGGGCGTCAAACGTGGGGAATAAGACGGTGTACGA
GGACAGTGATGAGTTTGCACGGCAAGAAGAAAGGCTGGCGGAGAAGAAGA
GGAGAGACGAGGAGCTTCGTGCGGCAGTGGAAGGTGGGGGGAAGGCGAAG
GATGAAGAGGAGCAACAGGAGCCGATTGATTACTCATTGTATCAGACGTT
TTGGGGATTACAGGAAGATTTAAGTGAGCCGACACGGGTGATGCAGAGCG
ATGACGCTTGGAGGGAGTTTGTGGGGAAGGCCAAGGAGGTGCTGCAGGCC
TTCGAGGGGTTTACGGTCAATCAGGACTCAGCCGCGGCCTCAGCAGTCAA
GGGGGGAGTGGCAGCGGTTGGGAAGAAGGTGGGGAAAGCAGGAGGAGAGG
AGGGGGAGGGTAAGGAAGGGGAGAGGATGGAGGGGAAGGCAGAGGGAGAG
GGAAAGGAAGTGCCGATGCCGGAGGAGGAGGTGGAGGGGGAGGAAGAGGG
GGAGGAGAGGGGGGACGAGGAGGAAGCGAGCTCGACAGAGGGGTCTAAAA
AGAAACGAAGCCGAAAGAGCGTCAAGCCTTCCTCCTCCTCTTCCTCCACC
ACTATCTCCCGCAGCCTTCGCCCTCAACACCAGCACCAGGAGCAGGAGGA
CGAGAAGGATGAAGAGGGCACGGCCTACCTGGGTTGCAAATATCTAACCA
ACAGTCGCCTCTTCCGCCTGCAACTGCACGACCCCCTCGTCCGTGTCCAA
GTCCTGTCCCAGCTCCTCATCCTTCTCAATTACGTTTCCGCCTCTGCTGC
CCTCTCAGCCATTTCCTCCCTCCCTCCCTCCTCGTCCTCCACTACCACGC
CAACCACCACCTCCACACCTCCTACCTCAAGCAAACCGGGCGCAATCGAG
ATAACCAAGCATGCCCGCCGCCTGATCCGCTCCACACCCACCCACGGCAG
CACCTACCTCGCCACCCTTGACACCGTCCTGGACCGTGAAAAGGCGTGGT
TGGCGTGGAAAAAACTGCAGCGGTGCGAGCCCAAGATCGAGAAACCTCGT
GCCCCACCTGCCAAGGCTACCCGGACGTTGGACGAGGTCAAGAAGGCTCT
GGCCGTGGCAGGAAAGCCTACCTTGGTTGTTGCGCAGCAACAGCGGACGT
TTTATGGAAGGGCGCTTCCCTTGCCGAGGCCGGTGGATTTGGATGCGATC
GAGGCGGAAGTTGGGAGGGAGGGAGGGCGGACGTGGGAGACTTATGTGAA
GCCGAGGATGGAGGAGGCGGAAGATCCTGAGGCTTGCATCGATGAGGAAT
ATCACCCACGGCATGAGCCCGTGTTCTGCTGGCGGGCATTGAGGTTGGCG
TGGGTTGCGGATGTGAAGTCGGTGGTGGGGCTTAAAAGTGGGGGCCTCGA
CGGCATTTGGAGGAGGATGACAGGGAAAGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTTGTAGAAGATATGGAAGAGGGGGGTGAGAAGGACAAAGTGGTG
AAAGAAGAAGAGGAGGAGGGCAAGAAAAAAAAGAGGAAGCGGAAGGGGGG
GGCTGAGGGAAAAGAGGGCGAAGAGGATGAAGAGGAGGTGGCTAATGCGG
AGGCGATGGAGGTGGAGACGCCGGGGATGAATGGAGAAGAAGCATAG

Coding sequence (CDS) from alignment at chr9:976241..978487+

>NO09G03380.1 ID=NO09G03380.1|Name=NO09G03380.1|organism=Nannochloropsis oceanica|type=CDS|length=2247bp|location=Sequence derived from alignment at chr9:976241..978487+ (Nannochloropsis oceanica)
ATGCCTAAAGCAGCAGCTGCACCAGCACCAATCGTCACCACGGGCGATGC
CGAGGCAGCCTTGACCCAGCTGGAAGAATGCATCCGCACCAATTACCGAA
AGGGAGCGTCGGGCTTGGCCGTGGTGCGGGACCTGGCTTCGGCGGTGGCG
ACCGCAGAAGCAGGCAAACCAGTTGCCCAAGACACGGACTTGGTGGAGGT
GGCGTTTCGAGCAGTGCTGGTCGGTTTGGTGCGGGAGTCCTTGGCGGGAA
GGCAGGATCTGCTGGATGAGGAGAAGTTTGGAATGCGGGCATTATTGGAC
TTGGCATTGGGATTAGCGCAAGGAGGAGGGGGAGAAGGCACGGGGCTACG
AAGCGTATTTTTCTTACTGGAGGACGTGTTTGAATTTCTGGGTGTGGAGC
AGATCCAAACTTTTTGGCCGGAGGTGGAAGCGAGAGAGGAGGCGTTGTTT
GCGCTTTTCAAGGTGGCTCGCAAGAGTAATCTGACGATGCTGAAGCTCTG
TAACTCCCTCTTGCGGAAATTGTCAAAGAGCCACAACACGGCTATTTGTG
GTCGCATCATGATGTACCTGTCGAGGAATTGGGAGCTGAGTGACCCCTCG
GCCATCAACAAAGGAGGGGCGTCAAACGTGGGGAATAAGACGGTGTACGA
GGACAGTGATGAGTTTGCACGGCAAGAAGAAAGGCTGGCGGAGAAGAAGA
GGAGAGACGAGGAGCTTCGTGCGGCAGTGGAAGGTGGGGGGAAGGCGAAG
GATGAAGAGGAGCAACAGGAGCCGATTGATTACTCATTGTATCAGACGTT
TTGGGGATTACAGGAAGATTTAAGTGAGCCGACACGGGTGATGCAGAGCG
ATGACGCTTGGAGGGAGTTTGTGGGGAAGGCCAAGGAGGTGCTGCAGGCC
TTCGAGGGGTTTACGGTCAATCAGGACTCAGCCGCGGCCTCAGCAGTCAA
GGGGGGAGTGGCAGCGGTTGGGAAGAAGGTGGGGAAAGCAGGAGGAGAGG
AGGGGGAGGGTAAGGAAGGGGAGAGGATGGAGGGGAAGGCAGAGGGAGAG
GGAAAGGAAGTGCCGATGCCGGAGGAGGAGGTGGAGGGGGAGGAAGAGGG
GGAGGAGAGGGGGGACGAGGAGGAAGCGAGCTCGACAGAGGGGTCTAAAA
AGAAACGAAGCCGAAAGAGCGTCAAGCCTTCCTCCTCCTCTTCCTCCACC
ACTATCTCCCGCAGCCTTCGCCCTCAACACCAGCACCAGGAGCAGGAGGA
CGAGAAGGATGAAGAGGGCACGGCCTACCTGGGTTGCAAATATCTAACCA
ACAGTCGCCTCTTCCGCCTGCAACTGCACGACCCCCTCGTCCGTGTCCAA
GTCCTGTCCCAGCTCCTCATCCTTCTCAATTACGTTTCCGCCTCTGCTGC
CCTCTCAGCCATTTCCTCCCTCCCTCCCTCCTCGTCCTCCACTACCACGC
CAACCACCACCTCCACACCTCCTACCTCAAGCAAACCGGGCGCAATCGAG
ATAACCAAGCATGCCCGCCGCCTGATCCGCTCCACACCCACCCACGGCAG
CACCTACCTCGCCACCCTTGACACCGTCCTGGACCGTGAAAAGGCGTGGT
TGGCGTGGAAAAAACTGCAGCGGTGCGAGCCCAAGATCGAGAAACCTCGT
GCCCCACCTGCCAAGGCTACCCGGACGTTGGACGAGGTCAAGAAGGCTCT
GGCCGTGGCAGGAAAGCCTACCTTGGTTGTTGCGCAGCAACAGCGGACGT
TTTATGGAAGGGCGCTTCCCTTGCCGAGGCCGGTGGATTTGGATGCGATC
GAGGCGGAAGTTGGGAGGGAGGGAGGGCGGACGTGGGAGACTTATGTGAA
GCCGAGGATGGAGGAGGCGGAAGATCCTGAGGCTTGCATCGATGAGGAAT
ATCACCCACGGCATGAGCCCGTGTTCTGCTGGCGGGCATTGAGGTTGGCG
TGGGTTGCGGATGTGAAGTCGGTGGTGGGGCTTAAAAGTGGGGGCCTCGA
CGGCATTTGGAGGAGGATGACAGGGAAAGAGGAGGAGGAGGAGGAGGAGG
AGGAGGTTGTAGAAGATATGGAAGAGGGGGGTGAGAAGGACAAAGTGGTG
AAAGAAGAAGAGGAGGAGGGCAAGAAAAAAAAGAGGAAGCGGAAGGGGGG
GGCTGAGGGAAAAGAGGGCGAAGAGGATGAAGAGGAGGTGGCTAATGCGG
AGGCGATGGAGGTGGAGACGCCGGGGATGAATGGAGAAGAAGCATAG

Synonyms

Publications