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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:955201..958104 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03320.1 vs.
Match: EWM27469.1 (thiamine biosynthesis protein [Nannochloropsis gaditana]) HSP 1 Score: 1215.7 bits (3144), Expect = 0.000e+0 Identity = 590/641 (92.04%), Postives = 606/641 (94.54%), Query Frame = 0
Query: 1 MPFLTRKALVQAVAVALASASCADGWMVGPGV--AGKAAGTSTGTRLAATTIEAPKTVTDGIGAEGVIRPAGSGRSKPTKDPYNPDFIRPLTFEEAYPSSTKAYIRVTHEGTGETMSVPFRRIQLADKDPGCGHLDLYDTSGPQGVNPREGLPKLRKSWIGRREQNGDATPTQMWYAKQGIITEEMAYVAAREGMDPQFVLSEVARGRAIIPSNKRHLELEPMIVGRNFKVKVNSNIGNSAVTSSIEEEVEKLQWSTLWGADTLMDLSTGKHIHQTREWIMRNSPIPVGTVPIYQALEKADGIVENLTWELFRETLIEQAEQGVDYFTIHAGVLLRYIPMTANRMTGIVSRGGSIHAKLCLLDHKENFAYEHWDDILDICAKYDISLSIGDGLRPGSIKDANDEAQFAELLTQGELTRRAWAKNVQVMNEGPGHVPLHKIPENMRNQLDWCSEAPFYTLGPLTTDVAPGYDHITSAIGAATIGSLGTALLCYVTPKEHLGLPNRDDVKAGLIAYRIAAHAADLAKQHPRAQEWDDALSKSRFEFRWEDQFNLAMDPITARAYHDETIDSDAGKNAHFCSMCGPKFCSMKITEDVRAYAREHGYGVDEKVFEVGMKDMSKEFAKVGQVYVEETELAKKLAKE 640
MPF+TR+A +QA A+A S SC +GW+VG GV GK T LAA TIEAPKT +GIGAEGVIRPAGSGRSKPTKDPYNPDFIRPLTFEEAYP TK YI VTHEGTGE MSVPFRR+ LAD DPGC HLDLYDTSGPQGVNPREGLPKLRKSW+GRREQ GD TPTQMWYAKQGI+TEEMAYVAAREGMDPQFVLSEVARGRAIIPSNKRHLELEPMIVGRNFKVKVNSNIGNSAVTSSIEEEVEKLQWSTLWGADTLMDLSTGKHIHQTREWIMRN+PIPVGTVPIYQALEK DGIVENLTWE+FRETLIEQAEQGVDYFTIHAGVLLRYIPMTA+RMTGIVSRGGSIHAKLCLLDHKENFAYEHWDDILDICAKYDISLSIGDGLRPGSIKDANDEAQFAELLTQGELTRRAW KNVQVMNEGPGHVPLHKIPENMRNQLDWCSEAPFYTLGPLTTDVAPGYDHITSAIGAATIGSLGTALLCYVTPKEHLGLPNRDDVKAGLIAYRIAAHAADLAKQHPRAQEWDDALSKSRFEFRWEDQFNLAMDPITARAYHDETIDSDAGKNAHFCSMCGPKFCSMKITEDVRAYAR+HGYGVDEKVFEVGM++MSKEFAKVGQVY EETELAKKL KE
Sbjct: 1 MPFITRRAALQAAAMAFLSGSCVEGWLVGSGVKATGKLTMRKIETSLAAATIEAPKTTAEGIGAEGVIRPAGSGRSKPTKDPYNPDFIRPLTFEEAYPKCTKEYIPVTHEGTGEVMSVPFRRVHLADTDPGCEHLDLYDTSGPQGVNPREGLPKLRKSWVGRREQKGDTTPTQMWYAKQGIVTEEMAYVAAREGMDPQFVLSEVARGRAIIPSNKRHLELEPMIVGRNFKVKVNSNIGNSAVTSSIEEEVEKLQWSTLWGADTLMDLSTGKHIHQTREWIMRNAPIPVGTVPIYQALEKVDGIVENLTWEVFRETLIEQAEQGVDYFTIHAGVLLRYIPMTASRMTGIVSRGGSIHAKLCLLDHKENFAYEHWDDILDICAKYDISLSIGDGLRPGSIKDANDEAQFAELLTQGELTRRAWEKNVQVMNEGPGHVPLHKIPENMRNQLDWCSEAPFYTLGPLTTDVAPGYDHITSAIGAATIGSLGTALLCYVTPKEHLGLPNRDDVKAGLIAYRIAAHAADLAKQHPRAQEWDDALSKSRFEFRWEDQFNLAMDPITARAYHDETIDSDAGKNAHFCSMCGPKFCSMKITEDVRAYARDHGYGVDEKVFEVGMENMSKEFAKVGQVYTEETELAKKLGKE 641
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03320.1 ID=NO09G03320.1|Name=NO09G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2558bp ACAAAGCGCCTCAAGTTGCCGTGCTAGCATAGCCGCCGGACGGGACGACA CTCTCTCACAGCCGCATCTCAAACAGAACGGTATAAGTATTCATGCCTTT TTTGACACGTAAGGCATTGGTGCAAGCCGTGGCCGTAGCTTTGGCCTCGG CAAGCTGCGCAGATGGCTGGATGGTGGGGCCGGGCGTGGCGGGCAAGGCA GCAGGAACATCGACAGGGACACGCCTTGCCGCCACGACCATTGAGGCGCC CAAGACGGTCACGGACGGGATTGGTGCCGAGGGTGTGATTCGGCCGGCGG GAAGCGGGCGCAGCAAGCCGACTAAGGACCCCTACAACCCTGACTTCATC CGGCCCTTGACCTTCGAAGAGGCCTACCCGTCAAGCACCAAGGCGTACAT CCGTGTCACGCACGAGGGCACGGGGGAGACCATGTCCGTCCCGTTCCGAC GCATTCAACTTGCAGACAAAGATCCAGGCTGCGGGCATCTGGACCTCTAC GACACCAGCGGACCCCAGGGTGTGAACCCTCGCGAGGGCCTGCCCAAGCT CCGCAAGAGCTGGATTGGCCGCCGGGAGCAGAACGGGGACGCGACCCCCA CACAGATGTGGTATGCCAAGCAGGGCATCATAACGGAGGAGATGGCGTAT GTGGCGGCACGCGAGGGGATGGACCCACAATTTGTTTTGTCCGAAGTGGC GCGTGGACGGGCCATCATTCCCTCGAACAAGCGGCATTTGGAGTTGGAGC CCATGATTGTGGGGAGGAACTTCAAGGTGAAGGTGAACAGCAACATTGGG AACAGCGCCGTCACCTCCTCGATAGAGGAGGAGGTGGAGAAGCTGCAGTG GTCAACGTTGTGGGGGGCGGATACATTGATGGACTTGAGCACGGGGAAGC ACATTCACCAGACCCGTGAATGGATCATGCGCAACTCCCCCATCCCTGTG GGGACCGTGCCGATCTACCAAGCCCTGGAGAAGGCGGACGGTATTGTGGA GAACTTGACCTGGGAGCTGTTCAGGGAGACATTGATCGAACAGGCCGAGC AGGGTGTAGACTACTTCACGATTCATGCCGGCGTCCTGCTCCGATACATC CCCATGACCGCCAATCGTATGACCGGCATCGTCTCTCGCGGTGGCTCCAT CCACGCCAAGCTCTGCCTGTTGGACCACAAGGAGAACTTCGCCTACGAGC ACTGGGATGATATCCTTGATATTTGCGCCAAGTACGACATCTCCCTCTCT ATCGGCGATGGCCTCCGCCCGGGCTCCATTAAAGATGCCAATGACGAGGC TCAGTTCGCTGAGCTCCTCACCCAAGGCGAGCTGACCCGTCGCGCTTGGG CCAAGAATGTGCAAGTCATGAACGAAGGCCCTGGCCATGTCCCTCTCCAC AAGATCCCCGAGAATATGCGCAACCAGCTGGACTGGTGCAGCGAGGCCCC CTTCTACACGCTCGGACCGTTGACCACGGACGTTGCCCCGGGCTATGACC ACATTACTTCGGCCATTGGCGCTGCCACCATCGGGTCTTTGGGCACGGCT TTGTTGTGCTACGTCACGCCGAAAGAGCACTTGGGCCTCCCGAATAGGGA TGATGTCAAGGCAGGTTTGATTGCATACAGGATTGCGGCCCACGCGGCGG ACCTGGCCAAGCAACATCCGCGGGCGCAGGAGTGGGACGATGCCCTTAGC AAGTCGCGTTTCGAGTTCCGTTGGGAGGATCAATTTAATCTGGCCATGGA TCCCATTACTGCCCGGGCTTATCACGATGAGACCATCGACTCAGATGCGG GCAAAAACGCCCATTTCTGCTCCATGTGTGGACCTAAGTTTTGCTCGATG AAGATCACAGAGGATGTGCGGGCCTATGCACGAGAGCATGGATACGGCGT GGACGAGAAGGTGTTCGAAGTGGGGATGAAGGACATGAGCAAGGAGTTTG CCAAAGTTGGGCAGGTCTATGTGGAAGAGACGGAGCTAGCCAAGAAGCTG GCGAAAGAGTAAAACAAATGGACACAGTATGGTGAATTGAGAAATGGATG TGCGAGGGACAAGTGAGACCTTCATTTCCTCCTGATTTTGAGAGTTGGAC GGAGCGGATGACAGCGTGGGGGTGAGAGAAAGGAGGGAGACGCTTTTGTT ATGGGTCTCTCGGTTTTATAGAAGCCACGATAAGTAAGTAGGAGATGAAG ATGAGGTGGAGAGAGGAGAGAATAATGTGACCCGAAATTGCGCGAGAAGG GGTGGAGAAAGAGCCAAAGACATGGGGAAAAGAAGGTAGTTCCGCAATAA GGAAACCCTTCCGTATGTGAAGAGATGCGGAGGTGGTGGGACGGGCGATC CTTAAGTAGGTAAATAGTCGAAAGAAAGGCGAGGGGCGGGGATCCACACA CAGGGAAGGGACGCGGATACGCAACCATCAGCAAGTTTGAGACAAAAAGG ATAGCAACGGCAAGTTTCGCACCGTCGAAACGAAAGAAAAAACGAATGAA GCAATCTAAATACGAAGTGGTGTCGTGGCTTATGTTAGAGGTGGGGGAGG TCCAAAAT back to topprotein sequence of NO09G03320.1 >NO09G03320.1-protein ID=NO09G03320.1-protein|Name=NO09G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=640bp MPFLTRKALVQAVAVALASASCADGWMVGPGVAGKAAGTSTGTRLAATTI EAPKTVTDGIGAEGVIRPAGSGRSKPTKDPYNPDFIRPLTFEEAYPSSTK AYIRVTHEGTGETMSVPFRRIQLADKDPGCGHLDLYDTSGPQGVNPREGL PKLRKSWIGRREQNGDATPTQMWYAKQGIITEEMAYVAAREGMDPQFVLS EVARGRAIIPSNKRHLELEPMIVGRNFKVKVNSNIGNSAVTSSIEEEVEK LQWSTLWGADTLMDLSTGKHIHQTREWIMRNSPIPVGTVPIYQALEKADG IVENLTWELFRETLIEQAEQGVDYFTIHAGVLLRYIPMTANRMTGIVSRG GSIHAKLCLLDHKENFAYEHWDDILDICAKYDISLSIGDGLRPGSIKDAN DEAQFAELLTQGELTRRAWAKNVQVMNEGPGHVPLHKIPENMRNQLDWCS EAPFYTLGPLTTDVAPGYDHITSAIGAATIGSLGTALLCYVTPKEHLGLP NRDDVKAGLIAYRIAAHAADLAKQHPRAQEWDDALSKSRFEFRWEDQFNL AMDPITARAYHDETIDSDAGKNAHFCSMCGPKFCSMKITEDVRAYAREHG YGVDEKVFEVGMKDMSKEFAKVGQVYVEETELAKKLAKE* back to topmRNA from alignment at chr9:955201..958104+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03320.1 ID=NO09G03320.1|Name=NO09G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2904bp|location=Sequence derived from alignment at chr9:955201..958104+ (Nannochloropsis oceanica) ACAAAGCGCCTCAAGTTGCCGTGCTAGCATAGCCGCCGGACGGGACGACA
CTCTCTCACAGCCGCATCTCAAACAGAACGGTATAAGTATTCATGCCTTT
TTTGACACGTAAGGCATTGGTGCAAGCCGTGGCCGTAGCTTTGGCCTCGG
CAAGCTGCGCAGATGGCTGGATGGTGGGGCCGGGCGTGGCGGGCAAGGCA
GCAGGAACATCGACAGGGACACGCCTTGCCGCCACGACCATTGAGGCGCC
CAAGACGGTCACGGACGGGATTGGTGCCGAGGGTGTGATTCGGCCGGCGG
GAAGCGGGCGCAGCAAGCCGACTAAGGACCCCTACAACCCTGACTTCATC
CGGCCCTTGACCTTCGAAGAGGCCTACCCGTCAAGCACCAAGGCGTACAT
CCGTGTCACGCACGAGGGCACGGGGGAGACCATGTCCGTCCCGTTCCGAC
GCATTCAACTTGCAGACAAAGATCCAGGCTGCGGGCATCTGGACCTCTAC
GACACCAGCGGACCCCAGGGTGTGAACCCTCGCGAGGGCCTGCCCAAGCT
CCGCAAGAGCTGGATTGGCCGCCGGGAGCAGAACGGGGACGCGACCCCCA
CACAGATGTGGTATGCCAAGCAGGGCATCATAACGGAGGAGATGGCGTAT
GTGGCGGCACGCGAGGGGATGGACCCACAATTTGTTTTGTCCGAAGTGGC
GCGTGGACGGGCCATCATTCCCTCGAACAAGCGGCATTTGGAGTTGGAGC
CCATGATTGTGGGGAGGAACTTCAAGGTGAAGGTGAACAGCAACATTGGG
AACAGCGCCGTCACCTCCTCGATAGAGGAGGAGGTGGAGAAGCTGCAGTG
GTCAACGTTGTGGGGGGCGGATACATTGATGGACTTGAGCACGGGGAAGC
ACATTCACCAGACCCGTGAATGGATCATGCGCAACTCCCCCATCCCTGTG
GGGACCGTGCCGATCTACCAAGCCCTGGAGAAGGCGGACGGTATTGTGGA
GAACTTGACCTGGGAGCTGTTCAGGGAGACATTGATCGAACAGGCCGAGC
AGGGTGTAGACTACTTCACGATTCATGCCGGCGTCCTGCTCCGATACATC
CCCATGACCGCCAATCGTATGACCGGCATCGTCTCTCGCGGTGGCTCCAT
CCACGCCAAGCTCTGCCTGTTGGACCACAAGGAGAACTTCGCCTACGAGC
ACTGGGATGATATCCTTGATATTTGCGCCAAGTACGACATCTCCCTCTCT
ATCGGCGATGGCCTCCGCCCGGGCTCCATTAAAGATGCCAATGACGAGGC
TCAGTTCGCTGAGCTCCTCACCCAAGGCGAGCTGACCCGTCGCGCTTGGG
CCAAGAATGTGCAAGTCATGAACGAAGGCCCTGGCCATGTCCCTCTCCAC
AAGATCCCCGAGAATATGCGCAACCAGCTGGACTGGTGCAGCGAGGCCCC
CTTCTACACGCTCGGACCGTTGACCACGGACGTTGCCCCGGGCTATGACC
ACATTACTTCGGCCATTGGCGCTGCCACCATCGGGTCTTTGGGCACGGCT
TTGTTGTGCTACGTCACGCCGAAAGAGCACTTGGGCCTCCCGAATAGGGA
TGATGTCAAGGCAGGTTTGATTGCATACAGGATTGCGGCCCACGCGGCGG
ACCTGGCCAAGCAACATCCGCGGGCGCAGGAGTGGGACGATGCCCTTAGC
AAGTCGCGTTTCGAGTTCCGTTGGGAGGTACGGCGAAGGGAGACAGGAAG
AAGAGGGAGGGGGAAAGGGCTCTGTGTTCTTGGTTTTAATTGTAGTAACG
TGCGCCTACTTGCTTCACCGTCCTCATTCCCCGCCCTTCTCCCTCGCCCC
CTAACTCTCTTTTGTAGGATCAATTTAATCTGGCCATGGATCCCATTACT
GCCCGGGCTTATCACGATGAGACCATCGACTCAGATGCGGGCAAAAACGC
CCATTTCTGCTCCATGTGTGGACCTAAGTTTTGCTCGATGAAGGTGAGGG
GGAGTAAAGGGGAGGGAGGGAGGGTATGTGAATGTGTGAAAGTGGGTAAG
CAAGCTTGCGTTTATACCAGAAAAATATATGATGCCATCCAAAATATTTT
TTAAAATTGGGTTTCAGTCTTCCATCTATAGTTGTCACTCACCCCTTCAT
CCCTCCCTCCTTCCATTCGTTTTTTGCTCCCCTTCACCAATCAACCCAGA
TCACAGAGGATGTGCGGGCCTATGCACGAGAGCATGGATACGGCGTGGAC
GAGAAGGTGTTCGAAGTGGGGATGAAGGACATGAGCAAGGAGTTTGCCAA
AGTTGGGCAGGTCTATGTGGAAGAGACGGAGCTAGCCAAGAAGCTGGCGA
AAGAGTAAAACAAATGGACACAGTATGGTGAATTGAGAAATGGATGTGCG
AGGGACAAGTGAGACCTTCATTTCCTCCTGATTTTGAGAGTTGGACGGAG
CGGATGACAGCGTGGGGGTGAGAGAAAGGAGGGAGACGCTTTTGTTATGG
GTCTCTCGGTTTTATAGAAGCCACGATAAGTAAGTAGGAGATGAAGATGA
GGTGGAGAGAGGAGAGAATAATGTGACCCGAAATTGCGCGAGAAGGGGTG
GAGAAAGAGCCAAAGACATGGGGAAAAGAAGGTAGTTCCGCAATAAGGAA
ACCCTTCCGTATGTGAAGAGATGCGGAGGTGGTGGGACGGGCGATCCTTA
AGTAGGTAAATAGTCGAAAGAAAGGCGAGGGGCGGGGATCCACACACAGG
GAAGGGACGCGGATACGCAACCATCAGCAAGTTTGAGACAAAAAGGATAG
CAACGGCAAGTTTCGCACCGTCGAAACGAAAGAAAAAACGAATGAAGCAA
TCTAAATACGAAGTGGTGTCGTGGCTTATGTTAGAGGTGGGGGAGGTCCA
AAAT back to topCoding sequence (CDS) from alignment at chr9:955201..958104+ >NO09G03320.1 ID=NO09G03320.1|Name=NO09G03320.1|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at chr9:955201..958104+ (Nannochloropsis oceanica) ATGCCTTTTTTGACACGTAAGGCATTGGTGCAAGCCGTGGCCGTAGCTTT GGCCTCGGCAAGCTGCGCAGATGGCTGGATGGTGGGGCCGGGCGTGGCGG GCAAGGCAGCAGGAACATCGACAGGGACACGCCTTGCCGCCACGACCATT GAGGCGCCCAAGACGGTCACGGACGGGATTGGTGCCGAGGGTGTGATTCG GCCGGCGGGAAGCGGGCGCAGCAAGCCGACTAAGGACCCCTACAACCCTG ACTTCATCCGGCCCTTGACCTTCGAAGAGGCCTACCCGTCAAGCACCAAG GCGTACATCCGTGTCACGCACGAGGGCACGGGGGAGACCATGTCCGTCCC GTTCCGACGCATTCAACTTGCAGACAAAGATCCAGGCTGCGGGCATCTGG ACCTCTACGACACCAGCGGACCCCAGGGTGTGAACCCTCGCGAGGGCCTG CCCAAGCTCCGCAAGAGCTGGATTGGCCGCCGGGAGCAGAACGGGGACGC GACCCCCACACAGATGTGGTATGCCAAGCAGGGCATCATAACGGAGGAGA TGGCGTATGTGGCGGCACGCGAGGGGATGGACCCACAATTTGTTTTGTCC GAAGTGGCGCGTGGACGGGCCATCATTCCCTCGAACAAGCGGCATTTGGA GTTGGAGCCCATGATTGTGGGGAGGAACTTCAAGGTGAAGGTGAACAGCA ACATTGGGAACAGCGCCGTCACCTCCTCGATAGAGGAGGAGGTGGAGAAG CTGCAGTGGTCAACGTTGTGGGGGGCGGATACATTGATGGACTTGAGCAC GGGGAAGCACATTCACCAGACCCGTGAATGGATCATGCGCAACTCCCCCA TCCCTGTGGGGACCGTGCCGATCTACCAAGCCCTGGAGAAGGCGGACGGT ATTGTGGAGAACTTGACCTGGGAGCTGTTCAGGGAGACATTGATCGAACA GGCCGAGCAGGGTGTAGACTACTTCACGATTCATGCCGGCGTCCTGCTCC GATACATCCCCATGACCGCCAATCGTATGACCGGCATCGTCTCTCGCGGT GGCTCCATCCACGCCAAGCTCTGCCTGTTGGACCACAAGGAGAACTTCGC CTACGAGCACTGGGATGATATCCTTGATATTTGCGCCAAGTACGACATCT CCCTCTCTATCGGCGATGGCCTCCGCCCGGGCTCCATTAAAGATGCCAAT GACGAGGCTCAGTTCGCTGAGCTCCTCACCCAAGGCGAGCTGACCCGTCG CGCTTGGGCCAAGAATGTGCAAGTCATGAACGAAGGCCCTGGCCATGTCC CTCTCCACAAGATCCCCGAGAATATGCGCAACCAGCTGGACTGGTGCAGC GAGGCCCCCTTCTACACGCTCGGACCGTTGACCACGGACGTTGCCCCGGG CTATGACCACATTACTTCGGCCATTGGCGCTGCCACCATCGGGTCTTTGG GCACGGCTTTGTTGTGCTACGTCACGCCGAAAGAGCACTTGGGCCTCCCG AATAGGGATGATGTCAAGGCAGGTTTGATTGCATACAGGATTGCGGCCCA CGCGGCGGACCTGGCCAAGCAACATCCGCGGGCGCAGGAGTGGGACGATG CCCTTAGCAAGTCGCGTTTCGAGTTCCGTTGGGAGGATCAATTTAATCTG GCCATGGATCCCATTACTGCCCGGGCTTATCACGATGAGACCATCGACTC AGATGCGGGCAAAAACGCCCATTTCTGCTCCATGTGTGGACCTAAGTTTT GCTCGATGAAGATCACAGAGGATGTGCGGGCCTATGCACGAGAGCATGGA TACGGCGTGGACGAGAAGGTGTTCGAAGTGGGGATGAAGGACATGAGCAA GGAGTTTGCCAAAGTTGGGCAGGTCTATGTGGAAGAGACGGAGCTAGCCA AGAAGCTGGCGAAAGAGTAA back to top
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