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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr9 | genome | chr9:950461..954324 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03310.2 vs.
Match: EWM27463.1 (mitochondrial tricarboxylate transport protein [Nannochloropsis gaditana]) HSP 1 Score: 422.5 bits (1085), Expect = 8.200e-115 Identity = 204/231 (88.31%), Postives = 218/231 (94.37%), Query Frame = 0
Query: 1 MRYTVANHGFLALYRGLTPTLISAFPKAGIRFGSNAYFKKMLMDENGKLTPGKNFLAGVGAGTIESIFVVTPVETVKTKLIHLNMEFVGGVKHIVAKEGLSGVYQGLGATIMKQGSNQGLRFMFFNEYKNWITDNGKVPLTPITSFLGGMSAGCFSTLCNNPLDVIKTRMQGLDAAKYSNALDCARQLTKTEGFGVFLRGLVPRLGRVVPGQGIIFMSFESIQNKLVEVLL 232
MRYTV NHGFLALYRGLTPTLISAFPKAGIRFGSNAYFKK LMD+ GKLTPGKNFLAGVGAG IESIFVVTPVETVKTKLIHLNM F GGVKHIVA EG++GVYQGLGATIMKQGSNQGLRFMFFNEYKNW+T+NG+ LTP+TSFLGGMSAGCFSTLCNNPLDVIKTRMQGLDAAKY NALDCA+QL + EG GVFL+GL+PRLGRVVPGQGIIFMSFE+IQNKLV++LL
Sbjct: 105 MRYTVQNHGFLALYRGLTPTLISAFPKAGIRFGSNAYFKKQLMDDQGKLTPGKNFLAGVGAGIIESIFVVTPVETVKTKLIHLNMSFFGGVKHIVAHEGMAGVYQGLGATIMKQGSNQGLRFMFFNEYKNWVTNNGQHNLTPLTSFLGGMSAGCFSTLCNNPLDVIKTRMQGLDAAKYKNALDCAQQLMRHEGAGVFLKGLIPRLGRVVPGQGIIFMSFETIQNKLVDILL 335
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03310.2 ID=NO09G03310.2|Name=NO09G03310.2|organism=Nannochloropsis oceanica|type=mRNA|length=2923bp
AAGACAGGCTCGCAACTCCTCGCCCACCATGTCCAGCTCGACGACTGCCG
CGGCCTCGATTGTGCCTTTGGCGGCATCAACGTCCGCAACCAAGAAAAAG
CCCACCCAGATGATTTCCCTCATGGCGGGCTCCATTGCCGGCGGCATCGA
GGCTACCTGCGTATGGCCGATGGAGTTCATCAAGACACAGCTTCAGTTGC
AGGAAAAGCTGCCCGCGGGGGAGAAGCCCAAGTTTACGGGCATGATCGGG
GGTATACCGAAAAAAGCCTGCCTTCATCGCGCACCCACCTTTCCTTTCTA
CTCTCGTCTCCCTCTTGCCACCCTCTCTCCCAGGTATGCGATATACGGTG
GCAAATCACGGGTTCTTGGCGCTCTATCGGGGGCTGACCCCGACGCTGAT
CAGCGCCTTCCCCAAGGCCGGTATCCGTTTTGGCTCTAACGCTTACTTCA
AAAAGATGTTGATGGACGAGAACGGGAAACTGACCCCGGGCAAGAATTTC
TTGGCGGGCGTAGGCGCTGGCACCATCGAGAGTATTTTTGTCGTGACTCC
CGTCGAGACAGTAAAGACCAAGCTCATCCACTTGAACATGGAATTCGTGG
GAGGGGTGAAGCACATCGTGGCTAAGGAAGGGCTGTCGGGCGTGTACCAG
GGCCTGGGCGCCACCATCATGAAGCAGGGCTCCAATCAAGGGCTGCGATT
CATGTTCTTCAACGAGTACAAGAACTGGATTACAGACAACGGCAAGGTGC
CTCTCACGCCCATCACCTCCTTCCTCGGCGGCATGTCGGCGGGTTGCTTC
TCTACCCTCTGCAACAACCCCTTGGACGTGATCAAGACGCGCATGCAGGG
CCTGGATGCAGCCAAGTACAGCAATGCCTTGGATTGCGCGCGACAGCTGA
CCAAAACCGAAGGTTTCGGAGTGTTTCTCCGGGGACTGGTGCCGCGGCTG
GGGAGGGTTGTGCCTGGGCAAGGGATTATTTTTATGTCCTTCGAGAGCAT
TCAGAACAAGCTGGTTGAGGTGTTGTTGTGAGGAGGGGAGGGAAACAGGG
AGGGAAGGAGAAGTGAAGTGTAACCTATTGATTTTATGTATTTGAAAAGA
GCAAGGTCATGTAGTGAGAGGAGGGCTGGTGGAAAGACAGTGACGAGCCG
ATCTAAGGAGGGCAGGAGGAGAAAGAGGAGCAAAAAGAAGAAATAGAGTG
GGAGGAGGAGAGGAGAACAAGGAGAAGAAGTGGCGGAGGGACTAGGAAAT
AGTGTGGCGTGAATGTGGTGCGTCACAAAGATAGGTGTGCGTTTATGTGT
ATGTGTGTATGTGTGTATGTGGGTGTGGGGGGGGGTTAAGGTTTGGATCC
GGGTCGCGCGTCACCGCCTGCCTGCCTGCTGCCGCTCCTGCCGACAAGTC
GATTTCGTGAATGCCGCTGTTGTCGGCATATATGCGTGTGCATGTGTGTG
TGTCTTCCCAGCCGTGCGGGTGTGTGGCCGGGGGAATGGAGCCCGTGGCG
ACGAGAAGTTAAATCACGGTTAGAAGAAGGAAGGGAGGAGGGGGAAGGAA
GGGGGTGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGAGGAGCCTA
CATGACGCCACAAAATGAAATCAAGGCATTCTATGAAAGCACGATTGGGG
AGATTTGATGGATGGCGGCTGACTATAGGCGTCTTACAGGGGGTATCTGA
TCGAAGGCAGATCGAAAAAGCAACTCAGCAAAAATGAAGATGAATAGGAG
GAAGAGAAGGGAGTCATTTCCATTCACGAAGAGAAAAAGAAAATAACTCA
AACGTTTGAATGCTCAAGGATTTGTAACTGCCTCCATGCGTGTGGTTTGT
GGGACTTTTCTTGCCGTTTCACGCACTTATGCGTACCCATTTTATACACC
AATAGTACCGATTGCAGGCGCTGGTGCGGTTGCTGCTGCATCTGCTGCTC
CTTCTGCTGATGAAGGTGACGTAATTGGTGGATTGGGACGCTGCTTCTGG
CTCGGTGTATTTCCTCTTGTTGCTGGCTTTGATACCTCCTGTCGCCATTC
TCATCGACGCTCACTATATCTAGAGTATATGTAAATAAAGATACATTAAT
CTTCTCTGCTAGTGTACATACACATATGTATAGAGTGTCAGTTTTTTTTC
AGTCGCTCTCCCATTTCCCCTTCTGACGATTTTTCTTCCCTTTTCTCTGT
GCTGGGGTCGTCCTCCCGTCTCTATTTTTCCTCAACATCTTGGCTCATAG
GTCTCCTTCTCTTACATTCTCTTCACAGTCAATTGTAACACTTCCACAGC
ACTATTTCACTATCAGATGAGTCATTCCTTCATCGTATTCCCTTTGTTCC
CTCCCTTTGCTTTCGCTACTCTGCTCAGTTTTCGTGCTTCTGGATATCCT
TTTTGCTATTCGGTCCTGCCTTTGATATAAGGCTGCCTTCAAGCTTTCTC
CCTCTTCTCTCCAAGTAATAAACATATAAGATACAACGGAAACTGACAAT
TCAGCAGTACCTAGTCTGCAATAAGGCCTTTGGTGTTCTATCTCTCTCCT
ACTCCTCCTCCTACTCCTCCTCCTCCTCATTCATGCACCGCTTCTTTCTT
CTTATGACAGGGATTTCCCTCTCTGGAGTACTTCTCACCCGAGTAAGAAT
AACAATGGATGACAATGCGATCCCTCTGATTCCACCTACCTATATCATCT
GCTGCTGGGGCAAGTAAAATGAAGGAGGTCCCGCCACTTCTCCTCATTCT
CTGCTACCTATGAATCTCCTCCCCTCCCCTTCCTCGTTTTTATCCTTTAC
TTGGAGGTTTACAACGATACAAGTGATATCGTCGATCATTTGCGGCGACA
CCCTCTTCCACCGTTTCCTCGCAATTCTCACCAAAGCTATCGCCGCCTCC
TTTGCATCCCACTCCCCTCCCTC back to topprotein sequence of NO09G03310.2 >NO09G03310.2-protein ID=NO09G03310.2-protein|Name=NO09G03310.2|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MRYTVANHGFLALYRGLTPTLISAFPKAGIRFGSNAYFKKMLMDENGKLT
PGKNFLAGVGAGTIESIFVVTPVETVKTKLIHLNMEFVGGVKHIVAKEGL
SGVYQGLGATIMKQGSNQGLRFMFFNEYKNWITDNGKVPLTPITSFLGGM
SAGCFSTLCNNPLDVIKTRMQGLDAAKYSNALDCARQLTKTEGFGVFLRG
LVPRLGRVVPGQGIIFMSFESIQNKLVEVLL* back to topmRNA from alignment at chr9:950461..954324- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03310.2 ID=NO09G03310.2|Name=NO09G03310.2|organism=Nannochloropsis oceanica|type=mRNA|length=3864bp|location=Sequence derived from alignment at chr9:950461..954324- (Nannochloropsis oceanica)
AAGACAGGCTCGCAACTCCTCGCCCACCATGTCCAGCTCGACGACTGCCG
CGGCCTCGATTGTGCCTTTGGCGGCATCAACGTCCGCAACCAAGAAAAAG
CCCACCCAGATGATTTCCCTCATGGCGGGCTCCATTGCCGGCGGTACGTC
TTGTAGCTTCGTGTTGGCCAACGCGAGGGGACGACAGGCAGTGAGGGAGG
CACCACGTGCTGTACGAAACGAAGGGTTTACGATTCGTGAGGCAGGGTCT
ACGCAGCGACTTGTACCATTCATGCATGATTTCGGAATGCTGGGGGCATG
GACAACTGTACTGATCCCTCTTCGTTCCTCGGTCCGTTTCTTTCTCCTAC
ACACGTTCTGATTATTTTTAACAGGCATCGAGGCTACCTGCGTATGGCCG
ATGGAGTTCATCAAGACACAGCTTCAGTTGCAGGAAAAGCTGCCCGCGGG
GGAGAAGCCCAAGTTTACGGGCATGATCGGGGGTAAGGACATGGGGGCAG
GCAGAGAGGAGCTAGGGAGGGAGGGCGGGCGGGCGGGATGGTAGGAGAAG
ATGTGCGATTCGCTCGAAGGGAAGAGAACCAATGGACAACACATACATAT
ATGCACATAGGTATACCGAAAAAAGCCTGCCTTCATCGCGCACCCACCTT
TCCTTTCTACTCTCGTCTCCCTCTTGCCACCCTCTCTCCCAGGTATGCGA
TATACGGTGGCAAATCACGGGTTCTTGGCGCTCTATCGGGGGCTGACCCC
GACGCTGATCAGCGCCTTCCCCAAGGCCGGTATCCGTTTTGGCTCTAACG
CTTACTTCAAAAAGATGTTGATGGACGAGAACGGGAAACTGACCCCGGGC
AAGAATTTCTTGGCGGGCGTAGGCGCTGGTGAGCTAAGAGAGGGAGGGAG
GGAGGGCGGGAGGGAGGTGATGAGAAAAGGGTCAAGTGCGACTGCATGCG
TTGACTTTGAGATTAGCGAGCTGTTTTCGAGCTTCTCCACCGCATGGAAG
ATGTGAGTGGCTTTCATTTGAAAATAACCTGTCATGGCTTACTCACTCTT
ACTCTCCCCTTTCCTCCCTCCCTCCTTGCCTCCCTCAGGCACCATCGAGA
GTATTTTTGTCGTGACTCCCGTCGAGACAGTAAAGACCAAGCTCATCCAC
TTGAACATGGAATTCGTGGGAGGGGTGAAGCACATCGTGGCTAAGGAAGG
GCTGTCGGGCGTGTACCAGGTGAGGAGGGAAGGAGGGAGGATGGGAGGAA
AGGAGGGAGGGAGAGAGTTCGAGTATTTGGAGTGTCTAGCAAAGGAAGAG
CCGAAGGGCTTGTTTTGCATCGAAAGAGGGAGGAAGTGAGAGGGGGATGG
AGAGAGGAGAGGCCTTATATCAGCGGCTCCGTAGATGATTATCATGTCTC
ACCCTCCCTTCTTCCCTACCTCCCCTCTCCCTCTTTCCCTCCTCAGGGCC
TGGGCGCCACCATCATGAAGCAGGGCTCCAATCAAGGGCTGCGATTCATG
TTCTTCAACGAGTACAAGAACTGGATTACAGACAACGGCAAGGTGCCTCT
CACGCCCATCACCTCCTTCCTCGGCGGCATGTCGGCGGGTTGCTTCTCTA
CCCTCTGCAACAACCCCTTGGGTGAGTACGCCCGCCCTCCCTCCCTCCCT
CCCTCCCTTTCTGCCTGCCCGCCCATTTTCCTCGCTTGCCTTTCTCTCAC
TTGGAAAGCGCCCTCCACGAAACCCGACCAATCACTCCCTCCCCCCCGCC
CTCCCTCCCCCCCTAGACGTGATCAAGACGCGCATGCAGGGCCTGGATGC
AGCCAAGTACAGCAATGCCTTGGATTGCGCGCGACAGCTGACCAAAACCG
AAGGTTTCGGAGTGTTTCTCCGGGGACTGGTGCCGCGGCTGGGGAGGGTT
GTGCCTGGGCAAGGGATTATTTTTATGTCCTTCGAGAGCATTCAGAACAA
GCTGGTTGAGGTGTTGTTGTGAGGAGGGGAGGGAAACAGGGAGGGAAGGA
GAAGTGAAGTGTAACCTATTGATTTTATGTATTTGAAAAGAGCAAGGTCA
TGTAGTGAGAGGAGGGCTGGTGGAAAGACAGTGACGAGCCGATCTAAGGA
GGGCAGGAGGAGAAAGAGGAGCAAAAAGAAGAAATAGAGTGGGAGGAGGA
GAGGAGAACAAGGAGAAGAAGTGGCGGAGGGACTAGGAAATAGTGTGGCG
TGAATGTGGTGCGTCACAAAGATAGGTGTGCGTTTATGTGTATGTGTGTA
TGTGTGTATGTGGGTGTGGGGGGGGGTTAAGGTTTGGATCCGGGTCGCGC
GTCACCGCCTGCCTGCCTGCTGCCGCTCCTGCCGACAAGTCGATTTCGTG
AATGCCGCTGTTGTCGGCATATATGCGTGTGCATGTGTGTGTGTCTTCCC
AGCCGTGCGGGTGTGTGGCCGGGGGAATGGAGCCCGTGGCGACGAGAAGT
TAAATCACGGTTAGAAGAAGGAAGGGAGGAGGGGGAAGGAAGGGGGTGAG
GAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGAGGAGCCTACATGACGCC
ACAAAATGAAATCAAGGCATTCTATGAAAGCACGATTGGGGAGATTTGAT
GGATGGCGGCTGACTATAGGCGTCTTACAGGGGGTATCTGATCGAAGGCA
GATCGAAAAAGCAACTCAGCAAAAATGAAGATGAATAGGAGGAAGAGAAG
GGAGTCATTTCCATTCACGAAGAGAAAAAGAAAATAACTCAAACGTTTGA
ATGCTCAAGGATTTGTAACTGCCTCCATGCGTGTGGTTTGTGGGACTTTT
CTTGCCGTTTCACGCACTTATGCGTACCCATTTTATACACCAATAGTACC
GATTGCAGGCGCTGGTGCGGTTGCTGCTGCATCTGCTGCTCCTTCTGCTG
ATGAAGGTGACGTAATTGGTGGATTGGGACGCTGCTTCTGGCTCGGTGTA
TTTCCTCTTGTTGCTGGCTTTGATACCTCCTGTCGCCATTCTCATCGACG
CTCACTATATCTAGAGTATATGTAAATAAAGATACATTAATCTTCTCTGC
TAGTGTACATACACATATGTATAGAGTGTCAGTTTTTTTTCAGTCGCTCT
CCCATTTCCCCTTCTGACGATTTTTCTTCCCTTTTCTCTGTGCTGGGGTC
GTCCTCCCGTCTCTATTTTTCCTCAACATCTTGGCTCATAGGTCTCCTTC
TCTTACATTCTCTTCACAGTCAATTGTAACACTTCCACAGCACTATTTCA
CTATCAGATGAGTCATTCCTTCATCGTATTCCCTTTGTTCCCTCCCTTTG
CTTTCGCTACTCTGCTCAGTTTTCGTGCTTCTGGATATCCTTTTTGCTAT
TCGGTCCTGCCTTTGATATAAGGCTGCCTTCAAGCTTTCTCCCTCTTCTC
TCCAAGTAATAAACATATAAGATACAACGGAAACTGACAATTCAGCAGTA
CCTAGTCTGCAATAAGGCCTTTGGTGTTCTATCTCTCTCCTACTCCTCCT
CCTACTCCTCCTCCTCCTCATTCATGCACCGCTTCTTTCTTCTTATGACA
GGGATTTCCCTCTCTGGAGTACTTCTCACCCGAGTAAGAATAACAATGGA
TGACAATGCGATCCCTCTGATTCCACCTACCTATATCATCTGCTGCTGGG
GCAAGTAAAATGAAGGAGGTCCCGCCACTTCTCCTCATTCTCTGCTACCT
ATGAATCTCCTCCCCTCCCCTTCCTCGTTTTTATCCTTTACTTGGAGGTT
TACAACGATACAAGTGATATCGTCGATCATTTGCGGCGACACCCTCTTCC
ACCGTTTCCTCGCAATTCTCACCAAAGCTATCGCCGCCTCCTTTGCATCC
CACTCCCCTCCCTC back to topCoding sequence (CDS) from alignment at chr9:950461..954324- >NO09G03310.2 ID=NO09G03310.2|Name=NO09G03310.2|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr9:950461..954324- (Nannochloropsis oceanica)
ATGCGATATACGGTGGCAAATCACGGGTTCTTGGCGCTCTATCGGGGGCT
GACCCCGACGCTGATCAGCGCCTTCCCCAAGGCCGGTATCCGTTTTGGCT
CTAACGCTTACTTCAAAAAGATGTTGATGGACGAGAACGGGAAACTGACC
CCGGGCAAGAATTTCTTGGCGGGCGTAGGCGCTGGCACCATCGAGAGTAT
TTTTGTCGTGACTCCCGTCGAGACAGTAAAGACCAAGCTCATCCACTTGA
ACATGGAATTCGTGGGAGGGGTGAAGCACATCGTGGCTAAGGAAGGGCTG
TCGGGCGTGTACCAGGGCCTGGGCGCCACCATCATGAAGCAGGGCTCCAA
TCAAGGGCTGCGATTCATGTTCTTCAACGAGTACAAGAACTGGATTACAG
ACAACGGCAAGGTGCCTCTCACGCCCATCACCTCCTTCCTCGGCGGCATG
TCGGCGGGTTGCTTCTCTACCCTCTGCAACAACCCCTTGGACGTGATCAA
GACGCGCATGCAGGGCCTGGATGCAGCCAAGTACAGCAATGCCTTGGATT
GCGCGCGACAGCTGACCAAAACCGAAGGTTTCGGAGTGTTTCTCCGGGGA
CTGGTGCCGCGGCTGGGGAGGGTTGTGCCTGGGCAAGGGATTATTTTTAT
GTCCTTCGAGAGCATTCAGAACAAGCTGGTTGAGGTGTTGTTGTGA back to top
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