NO09G03300.1, NO09G03300.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03300.1
Unique NameNO09G03300.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1863
Alignment locationchr9:948778..950640 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:948778..950640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G03300.1 vs.
Match: EWM27477.1 (protein phosphatase 2c ptc1 [Nannochloropsis gaditana])

HSP 1 Score: 148.3 bits (373), Expect = 8.000e-32
Identity = 94/216 (43.52%), Postives = 127/216 (58.80%), Query Frame = 0
Query:  417 GGQVGYRQYISYPAISSSSSSSSSSSSTSSSSTSSSSSFNHNRSSTHPLPTPSITLGPARIWYTWRGDRNGLAMSRSFGDSAVHAAGGSSEPEVVEYRVR------------------------ERGRDGEVEEDMFLILASDGVWDVVDNQEAVKVVGHFISVS-------TGGREGGEWDAKEAAIALVRIARKRWKRVSPQMIDDITCIVVNL 602
            GG +  R   ++ A    +++S  +++ ++    S+   +       P   P +TLGPAR+WY +RGDRNGLAMSRSFGD+AVHA GG+S+PEV+EY V+                        E+G + E EED FLILASDG+WDVVDNQEAV++V  +   S        GG + G W  ++AA ALV  AR RW+ +SP  IDDITC+VV L
Sbjct:  270 GGAIDVRGTCTHTAAHLFAAASKFAAAKAARRVLSTGDVSD------PKLLPPVTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRL 479          
The following BLAST results are available for this feature:
BLAST of NO09G03300.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27477.18.000e-3243.52protein phosphatase 2c ptc1 [Nannochloropsis gadit... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03300NO09G03300Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03300.1NO09G03300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03300.1.cds1NO09G03300.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03300.1 ID=NO09G03300.1|Name=NO09G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp
ATGACGGAGGGAGGAAAGGTGGTGGAAGAGATAGACGAGAAAATGGATGA
GGACAGGCAGACTGATAGGTCAGGCATTGATAATGAGGAACAACAGCAAC
ACCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAACACCAG
CAGCAGCAGCATTATCCCTACGTAGCGTCATCGCAACAGCACATCAGCAG
CAGTACAAGCACCACCGACACAACCAGCAGCACGAGTATCACAGAAGGGA
TGGCTCACCATAAAATGGGCCACGGATCCAAGCGCCTGGACATATCCTGG
CAAGCTGCTGCCCGGCTAATCGCTCCTGGCCCTACCCCTCGTGTCCACGT
CCGGGGCTCTCGTGGAGCTCACTCCATCTCCATGGGGAGTGTCGATTTGC
TCGCCCGCCCTCTCTTCACACCGAGATCGGCCTTTCTCCAGCACGTACAC
GACCCGGAGGATTGCTACTCCCTCTCGGGATCAGTGAGTGGGATGTGCAC
TGCTCAAGGGCTCAAGTCATCACATGCCAACTGGATCAACCAAGATAATT
TCATCCTCCTCGACGCAGAGCAGCAGCAGCAGACTTCGCACTCTGTTTCC
TTGCCTTCTTCGTCGTTGTTGCCGTCTTCCCATCCCGTGTCAATTTATGC
AGTTTTGGACGGGCACGGCGAGCAGGGGCATCTGGTCAGCCAGCGCGTGA
GGCAGCACCTCCCGCATTATCTCGTCCAGACACAGTTTGACCCCCTTCCG
GCGTTTCGATTGATGCAGAACGACCTGGTCATGTGTCCCTTACTCGACGT
GGCGTGCTCTGGGTCCACGTGCGTGATGGTCATAGCGCGCAACGTGGAGG
GAGAGGGGAAGGGAGGGAGTGAGAGAGGGATGATATTGACAGTGGTAAAT
TTGGGGGACTCCCGGTGTGTGTTGGGAAGAAGAAAGATGACAGATTGGCG
GCGGCAGCAGCAGCAGCAGCAGCAGCAGCCTTGGGGACAGAATGAGGGAG
AGGGGCAGGATCAGAAGCAGCAAGAGGAGAAGCGAGAGGGGAAAGAGCAG
TCAGATGAAAGCCTCGTCAGTTATCACCTTCAATCATCATCCTCTCCCTC
TCCCTCCGCCTCTCCCTACGACCACCACACCAACAATATTCATATCAACA
GCGGCAGGAGTAGCAGTAATAGGCGCATCTACGCCATCCCCCTCACCAAC
GATCATAAGCCCGACCGTCCAGATGAACTCCGCCGAATTGCCGCCATAGG
TGGTCAAGTCGGATATCGTCAATACATCTCATACCCCGCTATCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCTTCCTCCACCTCC
TCCTCCTCCTCCTTCAACCATAATCGCTCCTCCACGCACCCTCTTCCCAC
TCCTTCCATTACCTTGGGGCCGGCGCGGATATGGTACACATGGCGAGGGG
ATCGGAACGGGCTGGCGATGAGTCGCTCCTTCGGGGACAGCGCCGTGCAC
GCGGCCGGTGGCAGTAGCGAGCCAGAGGTGGTGGAATATCGAGTGAGGGA
AAGAGGGAGGGATGGCGAGGTAGAGGAAGATATGTTCTTGATCTTGGCGA
GCGACGGGGTGTGGGATGTGGTTGACAATCAGGAGGCTGTTAAGGTAGTG
GGGCACTTTATCAGTGTATCGACGGGAGGGAGGGAGGGAGGGGAGTGGGA
TGCAAAGGAGGCGGCGATAGCTTTGGTGAGAATTGCGAGGAAACGGTGGA
AGAGGGTGTCGCCGCAAATGATCGACGATATCACTTGTATCGTTGTAAAC
CTCCAAGTAAAGGATAAAAACGAGGAAGGGGAGGGGAGGAGATTCATAGG
TAGCAGAGAATGA
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protein sequence of NO09G03300.1

>NO09G03300.1-protein ID=NO09G03300.1-protein|Name=NO09G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp
MTEGGKVVEEIDEKMDEDRQTDRSGIDNEEQQQHHQQQHQQQHQQQQQHQ
QQQHYPYVASSQQHISSSTSTTDTTSSTSITEGMAHHKMGHGSKRLDISW
QAAARLIAPGPTPRVHVRGSRGAHSISMGSVDLLARPLFTPRSAFLQHVH
DPEDCYSLSGSVSGMCTAQGLKSSHANWINQDNFILLDAEQQQQTSHSVS
LPSSSLLPSSHPVSIYAVLDGHGEQGHLVSQRVRQHLPHYLVQTQFDPLP
AFRLMQNDLVMCPLLDVACSGSTCVMVIARNVEGEGKGGSERGMILTVVN
LGDSRCVLGRRKMTDWRRQQQQQQQQPWGQNEGEGQDQKQQEEKREGKEQ
SDESLVSYHLQSSSSPSPSASPYDHHTNNIHINSGRSSSNRRIYAIPLTN
DHKPDRPDELRRIAAIGGQVGYRQYISYPAISSSSSSSSSSSSTSSSSTS
SSSSFNHNRSSTHPLPTPSITLGPARIWYTWRGDRNGLAMSRSFGDSAVH
AAGGSSEPEVVEYRVRERGRDGEVEEDMFLILASDGVWDVVDNQEAVKVV
GHFISVSTGGREGGEWDAKEAAIALVRIARKRWKRVSPQMIDDITCIVVN
LQVKDKNEEGEGRRFIGSRE*
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mRNA from alignment at chr9:948778..950640+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03300.1 ID=NO09G03300.1|Name=NO09G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at chr9:948778..950640+ (Nannochloropsis oceanica)
ATGACGGAGGGAGGAAAGGTGGTGGAAGAGATAGACGAGAAAATGGATGA GGACAGGCAGACTGATAGGTCAGGCATTGATAATGAGGAACAACAGCAAC ACCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAACACCAG CAGCAGCAGCATTATCCCTACGTAGCGTCATCGCAACAGCACATCAGCAG CAGTACAAGCACCACCGACACAACCAGCAGCACGAGTATCACAGAAGGGA TGGCTCACCATAAAATGGGCCACGGATCCAAGCGCCTGGACATATCCTGG CAAGCTGCTGCCCGGCTAATCGCTCCTGGCCCTACCCCTCGTGTCCACGT CCGGGGCTCTCGTGGAGCTCACTCCATCTCCATGGGGAGTGTCGATTTGC TCGCCCGCCCTCTCTTCACACCGAGATCGGCCTTTCTCCAGCACGTACAC GACCCGGAGGATTGCTACTCCCTCTCGGGATCAGTGAGTGGGATGTGCAC TGCTCAAGGGCTCAAGTCATCACATGCCAACTGGATCAACCAAGATAATT TCATCCTCCTCGACGCAGAGCAGCAGCAGCAGACTTCGCACTCTGTTTCC TTGCCTTCTTCGTCGTTGTTGCCGTCTTCCCATCCCGTGTCAATTTATGC AGTTTTGGACGGGCACGGCGAGCAGGGGCATCTGGTCAGCCAGCGCGTGA GGCAGCACCTCCCGCATTATCTCGTCCAGACACAGTTTGACCCCCTTCCG GCGTTTCGATTGATGCAGAACGACCTGGTCATGTGTCCCTTACTCGACGT GGCGTGCTCTGGGTCCACGTGCGTGATGGTCATAGCGCGCAACGTGGAGG GAGAGGGGAAGGGAGGGAGTGAGAGAGGGATGATATTGACAGTGGTAAAT TTGGGGGACTCCCGGTGTGTGTTGGGAAGAAGAAAGATGACAGATTGGCG GCGGCAGCAGCAGCAGCAGCAGCAGCAGCCTTGGGGACAGAATGAGGGAG AGGGGCAGGATCAGAAGCAGCAAGAGGAGAAGCGAGAGGGGAAAGAGCAG TCAGATGAAAGCCTCGTCAGTTATCACCTTCAATCATCATCCTCTCCCTC TCCCTCCGCCTCTCCCTACGACCACCACACCAACAATATTCATATCAACA GCGGCAGGAGTAGCAGTAATAGGCGCATCTACGCCATCCCCCTCACCAAC GATCATAAGCCCGACCGTCCAGATGAACTCCGCCGAATTGCCGCCATAGG TGGTCAAGTCGGATATCGTCAATACATCTCATACCCCGCTATCTCCTCCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCTTCCTCCACCTCC TCCTCCTCCTCCTTCAACCATAATCGCTCCTCCACGCACCCTCTTCCCAC TCCTTCCATTACCTTGGGGCCGGCGCGGATATGGTACACATGGCGAGGGG ATCGGAACGGGCTGGCGATGAGTCGCTCCTTCGGGGACAGCGCCGTGCAC GCGGCCGGTGGCAGTAGCGAGCCAGAGGTGGTGGAATATCGAGTGAGGGA AAGAGGGAGGGATGGCGAGGTAGAGGAAGATATGTTCTTGATCTTGGCGA GCGACGGGGTGTGGGATGTGGTTGACAATCAGGAGGCTGTTAAGGTAGTG GGGCACTTTATCAGTGTATCGACGGGAGGGAGGGAGGGAGGGGAGTGGGA TGCAAAGGAGGCGGCGATAGCTTTGGTGAGAATTGCGAGGAAACGGTGGA AGAGGGTGTCGCCGCAAATGATCGACGATATCACTTGTATCGTTGTAAAC CTCCAAGTAAAGGATAAAAACGAGGAAGGGGAGGGGAGGAGATTCATAGG TAGCAGAGAATGA
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Coding sequence (CDS) from alignment at chr9:948778..950640+

>NO09G03300.1 ID=NO09G03300.1|Name=NO09G03300.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr9:948778..950640+ (Nannochloropsis oceanica)
ATGACGGAGGGAGGAAAGGTGGTGGAAGAGATAGACGAGAAAATGGATGA
GGACAGGCAGACTGATAGGTCAGGCATTGATAATGAGGAACAACAGCAAC
ACCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAACACCAG
CAGCAGCAGCATTATCCCTACGTAGCGTCATCGCAACAGCACATCAGCAG
CAGTACAAGCACCACCGACACAACCAGCAGCACGAGTATCACAGAAGGGA
TGGCTCACCATAAAATGGGCCACGGATCCAAGCGCCTGGACATATCCTGG
CAAGCTGCTGCCCGGCTAATCGCTCCTGGCCCTACCCCTCGTGTCCACGT
CCGGGGCTCTCGTGGAGCTCACTCCATCTCCATGGGGAGTGTCGATTTGC
TCGCCCGCCCTCTCTTCACACCGAGATCGGCCTTTCTCCAGCACGTACAC
GACCCGGAGGATTGCTACTCCCTCTCGGGATCAGTGAGTGGGATGTGCAC
TGCTCAAGGGCTCAAGTCATCACATGCCAACTGGATCAACCAAGATAATT
TCATCCTCCTCGACGCAGAGCAGCAGCAGCAGACTTCGCACTCTGTTTCC
TTGCCTTCTTCGTCGTTGTTGCCGTCTTCCCATCCCGTGTCAATTTATGC
AGTTTTGGACGGGCACGGCGAGCAGGGGCATCTGGTCAGCCAGCGCGTGA
GGCAGCACCTCCCGCATTATCTCGTCCAGACACAGTTTGACCCCCTTCCG
GCGTTTCGATTGATGCAGAACGACCTGGTCATGTGTCCCTTACTCGACGT
GGCGTGCTCTGGGTCCACGTGCGTGATGGTCATAGCGCGCAACGTGGAGG
GAGAGGGGAAGGGAGGGAGTGAGAGAGGGATGATATTGACAGTGGTAAAT
TTGGGGGACTCCCGGTGTGTGTTGGGAAGAAGAAAGATGACAGATTGGCG
GCGGCAGCAGCAGCAGCAGCAGCAGCAGCCTTGGGGACAGAATGAGGGAG
AGGGGCAGGATCAGAAGCAGCAAGAGGAGAAGCGAGAGGGGAAAGAGCAG
TCAGATGAAAGCCTCGTCAGTTATCACCTTCAATCATCATCCTCTCCCTC
TCCCTCCGCCTCTCCCTACGACCACCACACCAACAATATTCATATCAACA
GCGGCAGGAGTAGCAGTAATAGGCGCATCTACGCCATCCCCCTCACCAAC
GATCATAAGCCCGACCGTCCAGATGAACTCCGCCGAATTGCCGCCATAGG
TGGTCAAGTCGGATATCGTCAATACATCTCATACCCCGCTATCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCTTCCTCCACCTCC
TCCTCCTCCTCCTTCAACCATAATCGCTCCTCCACGCACCCTCTTCCCAC
TCCTTCCATTACCTTGGGGCCGGCGCGGATATGGTACACATGGCGAGGGG
ATCGGAACGGGCTGGCGATGAGTCGCTCCTTCGGGGACAGCGCCGTGCAC
GCGGCCGGTGGCAGTAGCGAGCCAGAGGTGGTGGAATATCGAGTGAGGGA
AAGAGGGAGGGATGGCGAGGTAGAGGAAGATATGTTCTTGATCTTGGCGA
GCGACGGGGTGTGGGATGTGGTTGACAATCAGGAGGCTGTTAAGGTAGTG
GGGCACTTTATCAGTGTATCGACGGGAGGGAGGGAGGGAGGGGAGTGGGA
TGCAAAGGAGGCGGCGATAGCTTTGGTGAGAATTGCGAGGAAACGGTGGA
AGAGGGTGTCGCCGCAAATGATCGACGATATCACTTGTATCGTTGTAAAC
CTCCAAGTAAAGGATAAAAACGAGGAAGGGGAGGGGAGGAGATTCATAGG
TAGCAGAGAATGA
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Synonyms
Publications