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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:948778..950640 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03300.1 vs.
Match: EWM27477.1 (protein phosphatase 2c ptc1 [Nannochloropsis gaditana]) HSP 1 Score: 148.3 bits (373), Expect = 8.000e-32 Identity = 94/216 (43.52%), Postives = 127/216 (58.80%), Query Frame = 0
Query: 417 GGQVGYRQYISYPAISSSSSSSSSSSSTSSSSTSSSSSFNHNRSSTHPLPTPSITLGPARIWYTWRGDRNGLAMSRSFGDSAVHAAGGSSEPEVVEYRVR------------------------ERGRDGEVEEDMFLILASDGVWDVVDNQEAVKVVGHFISVS-------TGGREGGEWDAKEAAIALVRIARKRWKRVSPQMIDDITCIVVNL 602
GG + R ++ A +++S +++ ++ S+ + P P +TLGPAR+WY +RGDRNGLAMSRSFGD+AVHA GG+S+PEV+EY V+ E+G + E EED FLILASDG+WDVVDNQEAV++V + S GG + G W ++AA ALV AR RW+ +SP IDDITC+VV L
Sbjct: 270 GGAIDVRGTCTHTAAHLFAAASKFAAAKAARRVLSTGDVSD------PKLLPPVTLGPARLWYQYRGDRNGLAMSRSFGDTAVHAVGGTSQPEVMEYLVKGGRSEGGKTCIGREEEEGGEGVMHEKGMEVEDEEDAFLILASDGLWDVVDNQEAVEIVDRYARASFRAGERREGGGKVGGWQPRKAAAALVSFARSRWEYLSPLSIDDITCVVVRL 479
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03300.1 ID=NO09G03300.1|Name=NO09G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp ATGACGGAGGGAGGAAAGGTGGTGGAAGAGATAGACGAGAAAATGGATGA GGACAGGCAGACTGATAGGTCAGGCATTGATAATGAGGAACAACAGCAAC ACCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAACACCAG CAGCAGCAGCATTATCCCTACGTAGCGTCATCGCAACAGCACATCAGCAG CAGTACAAGCACCACCGACACAACCAGCAGCACGAGTATCACAGAAGGGA TGGCTCACCATAAAATGGGCCACGGATCCAAGCGCCTGGACATATCCTGG CAAGCTGCTGCCCGGCTAATCGCTCCTGGCCCTACCCCTCGTGTCCACGT CCGGGGCTCTCGTGGAGCTCACTCCATCTCCATGGGGAGTGTCGATTTGC TCGCCCGCCCTCTCTTCACACCGAGATCGGCCTTTCTCCAGCACGTACAC GACCCGGAGGATTGCTACTCCCTCTCGGGATCAGTGAGTGGGATGTGCAC TGCTCAAGGGCTCAAGTCATCACATGCCAACTGGATCAACCAAGATAATT TCATCCTCCTCGACGCAGAGCAGCAGCAGCAGACTTCGCACTCTGTTTCC TTGCCTTCTTCGTCGTTGTTGCCGTCTTCCCATCCCGTGTCAATTTATGC AGTTTTGGACGGGCACGGCGAGCAGGGGCATCTGGTCAGCCAGCGCGTGA GGCAGCACCTCCCGCATTATCTCGTCCAGACACAGTTTGACCCCCTTCCG GCGTTTCGATTGATGCAGAACGACCTGGTCATGTGTCCCTTACTCGACGT GGCGTGCTCTGGGTCCACGTGCGTGATGGTCATAGCGCGCAACGTGGAGG GAGAGGGGAAGGGAGGGAGTGAGAGAGGGATGATATTGACAGTGGTAAAT TTGGGGGACTCCCGGTGTGTGTTGGGAAGAAGAAAGATGACAGATTGGCG GCGGCAGCAGCAGCAGCAGCAGCAGCAGCCTTGGGGACAGAATGAGGGAG AGGGGCAGGATCAGAAGCAGCAAGAGGAGAAGCGAGAGGGGAAAGAGCAG TCAGATGAAAGCCTCGTCAGTTATCACCTTCAATCATCATCCTCTCCCTC TCCCTCCGCCTCTCCCTACGACCACCACACCAACAATATTCATATCAACA GCGGCAGGAGTAGCAGTAATAGGCGCATCTACGCCATCCCCCTCACCAAC GATCATAAGCCCGACCGTCCAGATGAACTCCGCCGAATTGCCGCCATAGG TGGTCAAGTCGGATATCGTCAATACATCTCATACCCCGCTATCTCCTCCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCTTCCTCCACCTCC TCCTCCTCCTCCTTCAACCATAATCGCTCCTCCACGCACCCTCTTCCCAC TCCTTCCATTACCTTGGGGCCGGCGCGGATATGGTACACATGGCGAGGGG ATCGGAACGGGCTGGCGATGAGTCGCTCCTTCGGGGACAGCGCCGTGCAC GCGGCCGGTGGCAGTAGCGAGCCAGAGGTGGTGGAATATCGAGTGAGGGA AAGAGGGAGGGATGGCGAGGTAGAGGAAGATATGTTCTTGATCTTGGCGA GCGACGGGGTGTGGGATGTGGTTGACAATCAGGAGGCTGTTAAGGTAGTG GGGCACTTTATCAGTGTATCGACGGGAGGGAGGGAGGGAGGGGAGTGGGA TGCAAAGGAGGCGGCGATAGCTTTGGTGAGAATTGCGAGGAAACGGTGGA AGAGGGTGTCGCCGCAAATGATCGACGATATCACTTGTATCGTTGTAAAC CTCCAAGTAAAGGATAAAAACGAGGAAGGGGAGGGGAGGAGATTCATAGG TAGCAGAGAATGA back to topprotein sequence of NO09G03300.1 >NO09G03300.1-protein ID=NO09G03300.1-protein|Name=NO09G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=621bp MTEGGKVVEEIDEKMDEDRQTDRSGIDNEEQQQHHQQQHQQQHQQQQQHQ QQQHYPYVASSQQHISSSTSTTDTTSSTSITEGMAHHKMGHGSKRLDISW QAAARLIAPGPTPRVHVRGSRGAHSISMGSVDLLARPLFTPRSAFLQHVH DPEDCYSLSGSVSGMCTAQGLKSSHANWINQDNFILLDAEQQQQTSHSVS LPSSSLLPSSHPVSIYAVLDGHGEQGHLVSQRVRQHLPHYLVQTQFDPLP AFRLMQNDLVMCPLLDVACSGSTCVMVIARNVEGEGKGGSERGMILTVVN LGDSRCVLGRRKMTDWRRQQQQQQQQPWGQNEGEGQDQKQQEEKREGKEQ SDESLVSYHLQSSSSPSPSASPYDHHTNNIHINSGRSSSNRRIYAIPLTN DHKPDRPDELRRIAAIGGQVGYRQYISYPAISSSSSSSSSSSSTSSSSTS SSSSFNHNRSSTHPLPTPSITLGPARIWYTWRGDRNGLAMSRSFGDSAVH AAGGSSEPEVVEYRVRERGRDGEVEEDMFLILASDGVWDVVDNQEAVKVV GHFISVSTGGREGGEWDAKEAAIALVRIARKRWKRVSPQMIDDITCIVVN LQVKDKNEEGEGRRFIGSRE* back to topmRNA from alignment at chr9:948778..950640+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03300.1 ID=NO09G03300.1|Name=NO09G03300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at chr9:948778..950640+ (Nannochloropsis oceanica) ATGACGGAGGGAGGAAAGGTGGTGGAAGAGATAGACGAGAAAATGGATGA
GGACAGGCAGACTGATAGGTCAGGCATTGATAATGAGGAACAACAGCAAC
ACCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAACACCAG
CAGCAGCAGCATTATCCCTACGTAGCGTCATCGCAACAGCACATCAGCAG
CAGTACAAGCACCACCGACACAACCAGCAGCACGAGTATCACAGAAGGGA
TGGCTCACCATAAAATGGGCCACGGATCCAAGCGCCTGGACATATCCTGG
CAAGCTGCTGCCCGGCTAATCGCTCCTGGCCCTACCCCTCGTGTCCACGT
CCGGGGCTCTCGTGGAGCTCACTCCATCTCCATGGGGAGTGTCGATTTGC
TCGCCCGCCCTCTCTTCACACCGAGATCGGCCTTTCTCCAGCACGTACAC
GACCCGGAGGATTGCTACTCCCTCTCGGGATCAGTGAGTGGGATGTGCAC
TGCTCAAGGGCTCAAGTCATCACATGCCAACTGGATCAACCAAGATAATT
TCATCCTCCTCGACGCAGAGCAGCAGCAGCAGACTTCGCACTCTGTTTCC
TTGCCTTCTTCGTCGTTGTTGCCGTCTTCCCATCCCGTGTCAATTTATGC
AGTTTTGGACGGGCACGGCGAGCAGGGGCATCTGGTCAGCCAGCGCGTGA
GGCAGCACCTCCCGCATTATCTCGTCCAGACACAGTTTGACCCCCTTCCG
GCGTTTCGATTGATGCAGAACGACCTGGTCATGTGTCCCTTACTCGACGT
GGCGTGCTCTGGGTCCACGTGCGTGATGGTCATAGCGCGCAACGTGGAGG
GAGAGGGGAAGGGAGGGAGTGAGAGAGGGATGATATTGACAGTGGTAAAT
TTGGGGGACTCCCGGTGTGTGTTGGGAAGAAGAAAGATGACAGATTGGCG
GCGGCAGCAGCAGCAGCAGCAGCAGCAGCCTTGGGGACAGAATGAGGGAG
AGGGGCAGGATCAGAAGCAGCAAGAGGAGAAGCGAGAGGGGAAAGAGCAG
TCAGATGAAAGCCTCGTCAGTTATCACCTTCAATCATCATCCTCTCCCTC
TCCCTCCGCCTCTCCCTACGACCACCACACCAACAATATTCATATCAACA
GCGGCAGGAGTAGCAGTAATAGGCGCATCTACGCCATCCCCCTCACCAAC
GATCATAAGCCCGACCGTCCAGATGAACTCCGCCGAATTGCCGCCATAGG
TGGTCAAGTCGGATATCGTCAATACATCTCATACCCCGCTATCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCTTCCTCCACCTCC
TCCTCCTCCTCCTTCAACCATAATCGCTCCTCCACGCACCCTCTTCCCAC
TCCTTCCATTACCTTGGGGCCGGCGCGGATATGGTACACATGGCGAGGGG
ATCGGAACGGGCTGGCGATGAGTCGCTCCTTCGGGGACAGCGCCGTGCAC
GCGGCCGGTGGCAGTAGCGAGCCAGAGGTGGTGGAATATCGAGTGAGGGA
AAGAGGGAGGGATGGCGAGGTAGAGGAAGATATGTTCTTGATCTTGGCGA
GCGACGGGGTGTGGGATGTGGTTGACAATCAGGAGGCTGTTAAGGTAGTG
GGGCACTTTATCAGTGTATCGACGGGAGGGAGGGAGGGAGGGGAGTGGGA
TGCAAAGGAGGCGGCGATAGCTTTGGTGAGAATTGCGAGGAAACGGTGGA
AGAGGGTGTCGCCGCAAATGATCGACGATATCACTTGTATCGTTGTAAAC
CTCCAAGTAAAGGATAAAAACGAGGAAGGGGAGGGGAGGAGATTCATAGG
TAGCAGAGAATGA back to topCoding sequence (CDS) from alignment at chr9:948778..950640+ >NO09G03300.1 ID=NO09G03300.1|Name=NO09G03300.1|organism=Nannochloropsis oceanica|type=CDS|length=1863bp|location=Sequence derived from alignment at chr9:948778..950640+ (Nannochloropsis oceanica) ATGACGGAGGGAGGAAAGGTGGTGGAAGAGATAGACGAGAAAATGGATGA GGACAGGCAGACTGATAGGTCAGGCATTGATAATGAGGAACAACAGCAAC ACCATCAGCAGCAGCACCAGCAGCAGCACCAGCAGCAGCAGCAACACCAG CAGCAGCAGCATTATCCCTACGTAGCGTCATCGCAACAGCACATCAGCAG CAGTACAAGCACCACCGACACAACCAGCAGCACGAGTATCACAGAAGGGA TGGCTCACCATAAAATGGGCCACGGATCCAAGCGCCTGGACATATCCTGG CAAGCTGCTGCCCGGCTAATCGCTCCTGGCCCTACCCCTCGTGTCCACGT CCGGGGCTCTCGTGGAGCTCACTCCATCTCCATGGGGAGTGTCGATTTGC TCGCCCGCCCTCTCTTCACACCGAGATCGGCCTTTCTCCAGCACGTACAC GACCCGGAGGATTGCTACTCCCTCTCGGGATCAGTGAGTGGGATGTGCAC TGCTCAAGGGCTCAAGTCATCACATGCCAACTGGATCAACCAAGATAATT TCATCCTCCTCGACGCAGAGCAGCAGCAGCAGACTTCGCACTCTGTTTCC TTGCCTTCTTCGTCGTTGTTGCCGTCTTCCCATCCCGTGTCAATTTATGC AGTTTTGGACGGGCACGGCGAGCAGGGGCATCTGGTCAGCCAGCGCGTGA GGCAGCACCTCCCGCATTATCTCGTCCAGACACAGTTTGACCCCCTTCCG GCGTTTCGATTGATGCAGAACGACCTGGTCATGTGTCCCTTACTCGACGT GGCGTGCTCTGGGTCCACGTGCGTGATGGTCATAGCGCGCAACGTGGAGG GAGAGGGGAAGGGAGGGAGTGAGAGAGGGATGATATTGACAGTGGTAAAT TTGGGGGACTCCCGGTGTGTGTTGGGAAGAAGAAAGATGACAGATTGGCG GCGGCAGCAGCAGCAGCAGCAGCAGCAGCCTTGGGGACAGAATGAGGGAG AGGGGCAGGATCAGAAGCAGCAAGAGGAGAAGCGAGAGGGGAAAGAGCAG TCAGATGAAAGCCTCGTCAGTTATCACCTTCAATCATCATCCTCTCCCTC TCCCTCCGCCTCTCCCTACGACCACCACACCAACAATATTCATATCAACA GCGGCAGGAGTAGCAGTAATAGGCGCATCTACGCCATCCCCCTCACCAAC GATCATAAGCCCGACCGTCCAGATGAACTCCGCCGAATTGCCGCCATAGG TGGTCAAGTCGGATATCGTCAATACATCTCATACCCCGCTATCTCCTCCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCTTCCTCCACCTCC TCCTCCTCCTCCTTCAACCATAATCGCTCCTCCACGCACCCTCTTCCCAC TCCTTCCATTACCTTGGGGCCGGCGCGGATATGGTACACATGGCGAGGGG ATCGGAACGGGCTGGCGATGAGTCGCTCCTTCGGGGACAGCGCCGTGCAC GCGGCCGGTGGCAGTAGCGAGCCAGAGGTGGTGGAATATCGAGTGAGGGA AAGAGGGAGGGATGGCGAGGTAGAGGAAGATATGTTCTTGATCTTGGCGA GCGACGGGGTGTGGGATGTGGTTGACAATCAGGAGGCTGTTAAGGTAGTG GGGCACTTTATCAGTGTATCGACGGGAGGGAGGGAGGGAGGGGAGTGGGA TGCAAAGGAGGCGGCGATAGCTTTGGTGAGAATTGCGAGGAAACGGTGGA AGAGGGTGTCGCCGCAAATGATCGACGATATCACTTGTATCGTTGTAAAC CTCCAAGTAAAGGATAAAAACGAGGAAGGGGAGGGGAGGAGATTCATAGG TAGCAGAGAATGA back to top
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