NO09G03280.1, NO09G03280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03280.1
Unique NameNO09G03280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1041
Alignment locationchr9:944266..945306 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:944266..945306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03280.1 vs.
Match: EWM27475.1 (hypothetical protein Naga_100174g9 [Nannochloropsis gaditana])

HSP 1 Score: 107.1 bits (266), Expect = 1.100e-19
Identity = 87/248 (35.08%), Postives = 125/248 (50.40%), Query Frame = 0 
Query:    1 MQARRERRMKVVGREIAGTDD---TLTVRSEGQDVLGFDHGSNDDVEAATSLLGGGKSRYHHQVMAAATALVMGGRKEDEKDKGEAELRDHLPCPCLLAASLC-PCYFLGRGATLLTRKEQEEGKSNGEREVERHLNSEGWWTCLSSCLLASVCPLPCLWPTLACTHRRRQRKEIKQQYPHFPSLTPSSSSSSSLSPSSSMGRGSSSSSSSSSSSVQIINCELLGPGPLVEEVAFLEEMMRVKRRMSM 245
            MQARR + +++V R IA   D   +   +     + G D    +D E+A SLL G ++++ +    A  +   G  +E+  ++G  E    +  P  L    C PC  L R A+LL R     G  N  +     L+ +GW TCLS+ ++A  CPLPCLWP+L    R+RQR  I Q++ HFP   P+SSS +S S    MG               +  C+L  P PLV EVAFLEE+ R++R   M
Sbjct:   51 MQARRMQELQMVERNIAIDRDGGGSNKDKDLHDRLSGSDSEEYNDEESAISLLRG-RAKHIYPARRAGGSRENGPSRENRVERGR-ERPPWVQRPLSLFLGACFPCLLLARAASLLARSPMNAG--NRGKSPCNGLDMDGWKTCLSAAVVAMACPLPCLWPSL-WWWRKRQRHRILQRFSHFPDPVPTSSSGTSGSDGRKMG--------------VLTACQLCAPCPLVSEVAFLEEVERLQREKEM 279
The following BLAST results are available for this feature:
BLAST of NO09G03280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27475.11.100e-1935.08hypothetical protein Naga_100174g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03280NO09G03280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03280.1NO09G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03280.1.cds1NO09G03280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03280.1 ID=NO09G03280.1|Name=NO09G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp
ATGCAGGCCCGGCGGGAACGGCGGATGAAAGTGGTGGGGCGCGAGATTGC
AGGGACCGACGACACGCTCACAGTACGCTCAGAGGGCCAGGATGTGCTTG
GGTTTGATCACGGCAGCAACGACGATGTGGAGGCCGCGACTTCGCTGTTG
GGCGGAGGCAAGAGCCGATACCATCACCAAGTGATGGCAGCGGCCACTGC
TTTAGTCATGGGAGGCAGGAAAGAAGACGAAAAGGACAAGGGTGAGGCCG
AACTTCGAGACCACTTGCCTTGCCCGTGTCTGCTGGCGGCCTCTCTCTGC
CCTTGCTATTTCTTGGGTCGAGGCGCAACCCTGCTGACGAGGAAAGAACA
AGAAGAGGGAAAAAGCAACGGGGAAAGGGAAGTGGAGAGACACTTGAATA
GTGAAGGGTGGTGGACCTGCCTGTCTTCCTGCTTGCTGGCGAGTGTATGC
CCACTTCCCTGCCTGTGGCCTACATTAGCGTGCACGCATCGGAGACGACA
GAGAAAAGAAATCAAGCAGCAATATCCACATTTTCCATCGTTGACTCCTT
CTTCGTCTTCCTCATCATCATTATCGCCTTCCTCTTCAATGGGAAGGGGT
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTGTGCAGATCATTAATTG
TGAGTTGCTTGGGCCTGGGCCTTTGGTGGAGGAGGTTGCTTTCTTGGAGG
AAATGATGAGGGTGAAAAGAAGAATGAGTATGAAAGGAGAGGCAGTAGAA
GTAGAGATGACGCCAGTGGTACCATCGGAAAAGCCTGTGGCTGCGAAAAA
GGCAGACAGAGAAAGGGAAGGAAGGGACCCCACGTGGGAACCGTTTGAAG
GGTGGGACATGCGCCCTATAGCTGTTACCGATGCTGCTGCCCTTGCTGCT
GCTGCCGCCACCGCCGCTGCTTCTACTACCTCTACTACTGAAGCTAGCGG
TGCTGCCCACGAGGCGGGTGCGGAAAGGACATGGATAGAAATGCAGGAGG
ACGAAAAGGCGAGTTGGAGAGTAGTAACAGTACCCAAATGA
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protein sequence of NO09G03280.1

>NO09G03280.1-protein ID=NO09G03280.1-protein|Name=NO09G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MQARRERRMKVVGREIAGTDDTLTVRSEGQDVLGFDHGSNDDVEAATSLL
GGGKSRYHHQVMAAATALVMGGRKEDEKDKGEAELRDHLPCPCLLAASLC
PCYFLGRGATLLTRKEQEEGKSNGEREVERHLNSEGWWTCLSSCLLASVC
PLPCLWPTLACTHRRRQRKEIKQQYPHFPSLTPSSSSSSSLSPSSSMGRG
SSSSSSSSSSSVQIINCELLGPGPLVEEVAFLEEMMRVKRRMSMKGEAVE
VEMTPVVPSEKPVAAKKADREREGRDPTWEPFEGWDMRPIAVTDAAALAA
AAATAAASTTSTTEASGAAHEAGAERTWIEMQEDEKASWRVVTVPK*
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mRNA from alignment at chr9:944266..945306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03280.1 ID=NO09G03280.1|Name=NO09G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp|location=Sequence derived from alignment at chr9:944266..945306- (Nannochloropsis oceanica)
ATGCAGGCCCGGCGGGAACGGCGGATGAAAGTGGTGGGGCGCGAGATTGC
AGGGACCGACGACACGCTCACAGTACGCTCAGAGGGCCAGGATGTGCTTG
GGTTTGATCACGGCAGCAACGACGATGTGGAGGCCGCGACTTCGCTGTTG
GGCGGAGGCAAGAGCCGATACCATCACCAAGTGATGGCAGCGGCCACTGC
TTTAGTCATGGGAGGCAGGAAAGAAGACGAAAAGGACAAGGGTGAGGCCG
AACTTCGAGACCACTTGCCTTGCCCGTGTCTGCTGGCGGCCTCTCTCTGC
CCTTGCTATTTCTTGGGTCGAGGCGCAACCCTGCTGACGAGGAAAGAACA
AGAAGAGGGAAAAAGCAACGGGGAAAGGGAAGTGGAGAGACACTTGAATA
GTGAAGGGTGGTGGACCTGCCTGTCTTCCTGCTTGCTGGCGAGTGTATGC
CCACTTCCCTGCCTGTGGCCTACATTAGCGTGCACGCATCGGAGACGACA
GAGAAAAGAAATCAAGCAGCAATATCCACATTTTCCATCGTTGACTCCTT
CTTCGTCTTCCTCATCATCATTATCGCCTTCCTCTTCAATGGGAAGGGGT
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTGTGCAGATCATTAATTG
TGAGTTGCTTGGGCCTGGGCCTTTGGTGGAGGAGGTTGCTTTCTTGGAGG
AAATGATGAGGGTGAAAAGAAGAATGAGTATGAAAGGAGAGGCAGTAGAA
GTAGAGATGACGCCAGTGGTACCATCGGAAAAGCCTGTGGCTGCGAAAAA
GGCAGACAGAGAAAGGGAAGGAAGGGACCCCACGTGGGAACCGTTTGAAG
GGTGGGACATGCGCCCTATAGCTGTTACCGATGCTGCTGCCCTTGCTGCT
GCTGCCGCCACCGCCGCTGCTTCTACTACCTCTACTACTGAAGCTAGCGG
TGCTGCCCACGAGGCGGGTGCGGAAAGGACATGGATAGAAATGCAGGAGG
ACGAAAAGGCGAGTTGGAGAGTAGTAACAGTACCCAAATGA
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Coding sequence (CDS) from alignment at chr9:944266..945306-

>NO09G03280.1 ID=NO09G03280.1|Name=NO09G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at chr9:944266..945306- (Nannochloropsis oceanica)
ATGCAGGCCCGGCGGGAACGGCGGATGAAAGTGGTGGGGCGCGAGATTGC
AGGGACCGACGACACGCTCACAGTACGCTCAGAGGGCCAGGATGTGCTTG
GGTTTGATCACGGCAGCAACGACGATGTGGAGGCCGCGACTTCGCTGTTG
GGCGGAGGCAAGAGCCGATACCATCACCAAGTGATGGCAGCGGCCACTGC
TTTAGTCATGGGAGGCAGGAAAGAAGACGAAAAGGACAAGGGTGAGGCCG
AACTTCGAGACCACTTGCCTTGCCCGTGTCTGCTGGCGGCCTCTCTCTGC
CCTTGCTATTTCTTGGGTCGAGGCGCAACCCTGCTGACGAGGAAAGAACA
AGAAGAGGGAAAAAGCAACGGGGAAAGGGAAGTGGAGAGACACTTGAATA
GTGAAGGGTGGTGGACCTGCCTGTCTTCCTGCTTGCTGGCGAGTGTATGC
CCACTTCCCTGCCTGTGGCCTACATTAGCGTGCACGCATCGGAGACGACA
GAGAAAAGAAATCAAGCAGCAATATCCACATTTTCCATCGTTGACTCCTT
CTTCGTCTTCCTCATCATCATTATCGCCTTCCTCTTCAATGGGAAGGGGT
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGTGTGCAGATCATTAATTG
TGAGTTGCTTGGGCCTGGGCCTTTGGTGGAGGAGGTTGCTTTCTTGGAGG
AAATGATGAGGGTGAAAAGAAGAATGAGTATGAAAGGAGAGGCAGTAGAA
GTAGAGATGACGCCAGTGGTACCATCGGAAAAGCCTGTGGCTGCGAAAAA
GGCAGACAGAGAAAGGGAAGGAAGGGACCCCACGTGGGAACCGTTTGAAG
GGTGGGACATGCGCCCTATAGCTGTTACCGATGCTGCTGCCCTTGCTGCT
GCTGCCGCCACCGCCGCTGCTTCTACTACCTCTACTACTGAAGCTAGCGG
TGCTGCCCACGAGGCGGGTGCGGAAAGGACATGGATAGAAATGCAGGAGG
ACGAAAAGGCGAGTTGGAGAGTAGTAACAGTACCCAAATGA
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Synonyms
Publications