NO09G03270.2, NO09G03270.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03270.2
Unique NameNO09G03270.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2722
Alignment locationchr9:944222..947263 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:944222..947263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03270.2 vs.
Match: EWM27478.1 (hypothetical protein Naga_100174g10 [Nannochloropsis gaditana])

HSP 1 Score: 414.5 bits (1064), Expect = 2.600e-112
Identity = 205/263 (77.95%), Postives = 228/263 (86.69%), Query Frame = 0 
Query:    7 QGAVRLAKKHYITSSLWVAGLIVLTFFQGFAVPDDSLKQYEHVIKGIDLNKLYALQNDAWAAEEMYRQSKGWFSCDDACQSYKRAWQSAQAKLHNLEKEQEKKQREANKHLGVFSTYGVDEAKQLFWRSFKWGKSFGQRQTMFDMLFMGFRAMRRDEGLLEYTLQILIHFLLNMALGLFMALTGFTLSLWSFIRSYSPDFLTGLLFFAGAFVSAAAMVATYLTLLYGTAGATVFVGVKALLNNANRLEQEG--RGPRRNLHYE 268
            +GAVRLAKKHY+ SS+WVAGLI+LTFF+G  VPD++L +Y   +K ID NKLY LQNDAW AEE +R SKGWFSCD  CQ+ K  W  A AKL  LE+EQEKKQREANKHLG+FSTYGV+E KQLFW+SFKWGK+FGQRQTMFDMLFMGFRAM RDEGLLEY LQIL+HFLLNMA+GLF+ALTGFT SLWSFIR+YSPD +TGL FFAGA +SA AMVATYLTLLYGTAGATV+VGVKALLNNANRLEQ G  R PRRNLHYE
Sbjct:   44 RGAVRLAKKHYVISSMWVAGLIILTFFRGLTVPDENLTKYNQAVKSIDFNKLYRLQNDAWVAEEQFRHSKGWFSCDHVCQANKEVWNRALAKLQKLEREQEKKQREANKHLGLFSTYGVEECKQLFWKSFKWGKNFGQRQTMFDMLFMGFRAMGRDEGLLEYILQILMHFLLNMAMGLFVALTGFTFSLWSFIRAYSPDLVTGLFFFAGAVISATAMVATYLTLLYGTAGATVYVGVKALLNNANRLEQGGDARRPRRNLHYE 306
The following BLAST results are available for this feature:
BLAST of NO09G03270.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27478.12.600e-11277.95hypothetical protein Naga_100174g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03270NO09G03270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03270.2NO09G03270.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03270.2.cds1NO09G03270.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03270.2.cds2NO09G03270.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03270.2.cds3NO09G03270.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03270.2 ID=NO09G03270.2|Name=NO09G03270.2|organism=Nannochloropsis oceanica|type=mRNA|length=2722bp
CTGGGTCATTGTCAGCTGGCAGTTTCTTTTTGAATTTTTACGTTTCATTT
GGGTACTGTTACTACTCTCCAACTCGCCTTTTCGTCCTCCTGCATTTCTA
TCCATGTCCTTTCCGCACCCGCCTCGTGGGCAGCACCGCTAGCTTCAGTA
GTAGAGGTAGTAGAAGCAGCGGCGGTGGCGGCAGCAGCAGCAAGGGCAGC
AGCATCGGTAACAGCTATAGGGCGCATGTCCCACCCTTCAAACGGTTCCC
ACGTGGGGTCCCTTCCTTCCCTTTCTCTGTCTGCCTTTTTCGCAGCCACA
GGCTTTTCCGATGGTACCACTGGCGTCATCTCTACTTCTACTGCCTCTCC
TTTCATACTCATTCTTCTTTTCACCCTCATCATTTCCTCCAAGAAAGCAA
CCTCCTCCACCAAAGGCCCAGGCCCAAGCAACTCACAATTAATGATCTGC
ACACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTACCCCTTCCCATTGA
AGAGGAAGGCGATAATGATGATGAGGAAGACGAAGAAGGAGTCAACGATG
GAAAATGTGGATATTGCTGCTTGATTTCTTTTCTCTGTCGTCTCCGATGC
GTGCACGCTAATGTAGGCCACAGGCAGGGAAGTGGGCATACACTCGCCAG
CAAGCAGGAAGACAGGCAGGTCCACCACCCTTCACTATTCAAGTGTCTCT
CCACTTCCCTTTCCCCGTTGCTTTTTCCCTCTTCTTGTTCTTTCCTCGTC
AGCAGGGTTGCGCCTCGACCCAAGAAATAGCAAGGGCAGAGAGAGGCCGC
CAGCAGACACGGGCAAGGCAAGTGGTCTCGAAGTTCGGCCTCACCCTTGT
CCTTTTCGTCTTCTTTCCTGCCTCCCATGACTAAAGCAGTGGCCGCTGCC
ATCACTTGGTGATGGTATCGGCTCTTGCCTCCGCCCAACAGCGAAGTCGC
GGCCTCCACATCGTCGTTGCTGCCGTGATCAAACCCAAGCACATCCTGGC
CCTCTGAGCGTACTGTGAGCGTGTCGTCGGTCCCTGCAATCTCGCGCCCC
ACCACTTTCATCCGCCGTTCCCGCCGGGCCTGCATGGCTTTTTGAGCCAT
GTAGGTCATTTCCCACTCCATTTTGTCGTGCTGCGGGAGGCGTGGTGTGC
AGGATGGTCGGAGAGAGTAGAACGGAGAGGGGGGTGGGGAGGTCGATGGG
CTTGATGACACGAGGATGACTTTCAGAAGTTAGCGTGTCCTACAATGGGT
GCTGCAGCTTCTTGTCGTTCTCGTGGTGCTCGTCATTTTACCCATGGCCA
CCTGTTCGCAATTTATCGTGTCAAAGGGGGTTGAGAGCGCGGCAGGGGGG
AGACAAGACGATCGCTCGACACAGAGATGCCGCCTTCGTTCTCTCCCCTC
TGGACCAAGCTGGCTAGCACATAAGCATCACACTCAACCCTACACACTTC
TCATACGCAGCTTTCTACCTGGGAAAGGAGCAGCCGTACGCCCAGGGCTC
AACAAAGGCTCCGCACCAACATTGTTGCTCCCCTAGTCCCAGGAGTTCTG
CCACCCTCCCGCAGTACTACGTACATTCAACCAAGAAGGGCGACAAAATG
GCCCCGCAGCGGCAGGAGATGCAGCGGGTCGACCCCACGGCGGATCTACC
GATGATCGTGGCCCGGGTAAGACGGACTAGTGTGTGTATGCGCGTGTCTC
CCCTCTCTGCCTTCCCTTTCCCTGGCACTCGACGCCCCCTGTGTCCTTCA
CCTCCTTGTGTCTGCTCAACCTTGTGCTCTTTTCCCACTTGATGTCATCT
ACTTTTCCTGTCGTATGACATCCCATTGTATCCCATATCTCCCACATCAC
ACATGGATACATCCACTCACCAGGGTGCTGTCCGCTTGGCCAAGAAACAT
TACATCACTTCCTCTCTATGGGTGGCCGGTCTCATCGTCCTGACCTTCTT
CCAAGGCTTCGCCGTGCCTGATGATAGCTTGAAACAATACGAGCACGTCA
TCAAGGGCATCGACCTAAACAAGCTGTATGCTTTGCAGAATGATGCGTGG
GCCGCCGAAGAGATGTATCGGCAAAGTAAGGGCTGGTTCTCGTGTGACGA
TGCTTGCCAGTCCTACAAGCGTGCCTGGCAATCGGCGCAAGCCAAGCTGC
ACAATCTCGAAAAGGAGCAAGAAAAAAAACAACGCGAAGCAAATAAGCAC
CTGGGTGTCTTCTCTACCTACGGAGTTGACGAAGCCAAACAACTTTTTTG
GAGATCATTTAAGTGGGGCAAGTCTTTCGGGCAGCGACAGACGATGTTCG
ACATGCTGTTCATGGGCTTTCGCGCCATGCGTCGGGATGAAGGCTTGTTG
GAGTACACTTTGCAGATTTTGATCCACTTCCTGCTCAACATGGCGTTGGG
TCTCTTCATGGCACTTACGGGTTTTACGCTCTCCCTCTGGTCGTTCATCC
GCTCCTACTCCCCTGATTTTTTGACGGGCTTGTTATTCTTCGCGGGCGCT
TTCGTGAGTGCCGCGGCGATGGTTGCAACCTACCTGACACTTTTATATGG
CACGGCAGGCGCGACGGTGTTTGTGGGCGTGAAAGCTTTGTTGAACAATG
CTAATCGGTTGGAGCAAGAGGGAAGGGGTCCAAGGCGAAACCTGCACTAT
GAGTAGTGGGATGTTGAGAACAGGGGGCTGCAGAGTGAGATAAAGAAAGA
ATAAGCGAAGGAAAGACAGGTC
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protein sequence of NO09G03270.2

>NO09G03270.2-protein ID=NO09G03270.2-protein|Name=NO09G03270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MDTSTHQGAVRLAKKHYITSSLWVAGLIVLTFFQGFAVPDDSLKQYEHVI
KGIDLNKLYALQNDAWAAEEMYRQSKGWFSCDDACQSYKRAWQSAQAKLH
NLEKEQEKKQREANKHLGVFSTYGVDEAKQLFWRSFKWGKSFGQRQTMFD
MLFMGFRAMRRDEGLLEYTLQILIHFLLNMALGLFMALTGFTLSLWSFIR
SYSPDFLTGLLFFAGAFVSAAAMVATYLTLLYGTAGATVFVGVKALLNNA
NRLEQEGRGPRRNLHYE*
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mRNA from alignment at chr9:944222..947263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03270.2 ID=NO09G03270.2|Name=NO09G03270.2|organism=Nannochloropsis oceanica|type=mRNA|length=3042bp|location=Sequence derived from alignment at chr9:944222..947263+ (Nannochloropsis oceanica)
CTGGGTCATTGTCAGCTGGCAGTTTCTTTTTGAATTTTTACGTTTCATTT
GGGTACTGTTACTACTCTCCAACTCGCCTTTTCGTCCTCCTGCATTTCTA
TCCATGTCCTTTCCGCACCCGCCTCGTGGGCAGCACCGCTAGCTTCAGTA
GTAGAGGTAGTAGAAGCAGCGGCGGTGGCGGCAGCAGCAGCAAGGGCAGC
AGCATCGGTAACAGCTATAGGGCGCATGTCCCACCCTTCAAACGGTTCCC
ACGTGGGGTCCCTTCCTTCCCTTTCTCTGTCTGCCTTTTTCGCAGCCACA
GGCTTTTCCGATGGTACCACTGGCGTCATCTCTACTTCTACTGCCTCTCC
TTTCATACTCATTCTTCTTTTCACCCTCATCATTTCCTCCAAGAAAGCAA
CCTCCTCCACCAAAGGCCCAGGCCCAAGCAACTCACAATTAATGATCTGC
ACACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTACCCCTTCCCATTGA
AGAGGAAGGCGATAATGATGATGAGGAAGACGAAGAAGGAGTCAACGATG
GAAAATGTGGATATTGCTGCTTGATTTCTTTTCTCTGTCGTCTCCGATGC
GTGCACGCTAATGTAGGCCACAGGCAGGGAAGTGGGCATACACTCGCCAG
CAAGCAGGAAGACAGGCAGGTCCACCACCCTTCACTATTCAAGTGTCTCT
CCACTTCCCTTTCCCCGTTGCTTTTTCCCTCTTCTTGTTCTTTCCTCGTC
AGCAGGGTTGCGCCTCGACCCAAGAAATAGCAAGGGCAGAGAGAGGCCGC
CAGCAGACACGGGCAAGGCAAGTGGTCTCGAAGTTCGGCCTCACCCTTGT
CCTTTTCGTCTTCTTTCCTGCCTCCCATGACTAAAGCAGTGGCCGCTGCC
ATCACTTGGTGATGGTATCGGCTCTTGCCTCCGCCCAACAGCGAAGTCGC
GGCCTCCACATCGTCGTTGCTGCCGTGATCAAACCCAAGCACATCCTGGC
CCTCTGAGCGTACTGTGAGCGTGTCGTCGGTCCCTGCAATCTCGCGCCCC
ACCACTTTCATCCGCCGTTCCCGCCGGGCCTGCATGGCTTTTTGAGCCAT
GTAGGTCATTTCCCACTCCATTTTGTCGTGCTGCGGGAGGCGTGGTGTGC
AGGATGGTCGGAGAGAGTAGAACGGAGAGGGGGGTGGGGAGGTCGATGGG
CTTGATGACACGAGGATGACTTTCAGAAGTTAGCGTGTCCTACAATGGGT
GCTGCAGCTTCTTGTCGTTCTCGTGGTGCTCGTCATTTTACCCATGGCCA
CCTGTTCGCAATTTATCGTGTCAAAGGGGGTTGAGAGCGCGGCAGGGGGG
AGACAAGACGATCGCTCGACACAGAGATGCCGCCTTCGTTCTCTCCCCTC
TGGACCAAGCTGGCTAGCACATAAGCATCACACTCAACCCTACACACTTC
TCATACGCAGCTTTCTACCTGGGAAAGGAGCAGCCGTACGCCCAGGGCTC
AACAAAGGCTCCGCACCAACATTGTTGCTCCCCTAGTCCCAGGAGTTCTG
CCACCCTCCCGCAGTACTACGTACATTCAACCAAGAAGGGCGACAAAATG
GCCCCGCAGCGGCAGGAGATGCAGCGGGTCGACCCCACGGCGGATCTACC
GATGATCGTGGCCCGGGTAAGACGGACTAGTGTGTGTATGCGCGTGTCTC
CCCTCTCTGCCTTCCCTTTCCCTGGCACTCGACGCCCCCTGTGTCCTTCA
CCTCCTTGTGTCTGCTCAACCTTGTGCTCTTTTCCCACTTGATGTCATCT
ACTTTTCCTGTCGTATGACATCCCATTGTATCCCATATCTCCCACATCAC
ACATGGATACATCCACTCACCAGGGTGCTGTCCGCTTGGCCAAGAAACAT
TACATCACTTCCTCTCTATGGGTGGCCGGTCTCATCGTCCTGACCTTCTT
CCAAGGCTTCGCCGTGCCTGATGATAGCTTGAAACAATACGAGCACGTCA
TCAAGGGCATCGACCTAAACAAGCTGTATGCTTTGCAGAATGATGCGTGG
GCCGCCGAAGAGATGTATCGGCAAAGTAAGGGCTGGTTCTCGTGTGACGA
TGCTTGCCAGGTAGGCGGGAAGGAGGGAAAGGGGGTGCTTTGATCGAGCC
CTCAGCAGGCAGCTTTGGCAGTTTGTGCTCTCCTTGACATATACATATCG
TTTCTCCTCCCTGCATGCCTCAAGTGATTGCTTTCCCTTTTCACCCTCCT
TCCTTCCCTCCCTCCATTTCACAGTCCTACAAGCGTGCCTGGCAATCGGC
GCAAGCCAAGCTGCACAATCTCGAAAAGGAGCAAGAAAAAAAACAACGCG
AAGCAAATAAGCACCTGGGTGTCTTCTCTACCTACGGAGTTGACGAAGCC
AAACAACTTTTTTGGAGATCATTTAAGTGGGGCAAGTCTTTCGGGCAGCG
ACAGACGATGTTCGACATGCTGTTCATGGGCTTTCGCGCCATGCGTCGGG
ATGAAGGCTTGTTGGAGTACACTTTGCAGGCATGGAAGGAATAGAAGGAA
GAAAAGAGAGAAGGAGGGAGATAGCATAGGAGATTGCGGAAGGAAAATGT
CCTCGTTGCTTCGTTATCGTGTGTCCGTATCGTTCGTGCAAATACTAACT
CACCCTCAACCACACCCTCTCCCAACGATATTTAGATTTTGATCCACTTC
CTGCTCAACATGGCGTTGGGTCTCTTCATGGCACTTACGGGTTTTACGCT
CTCCCTCTGGTCGTTCATCCGCTCCTACTCCCCTGATTTTTTGACGGGCT
TGTTATTCTTCGCGGGCGCTTTCGTGAGTGCCGCGGCGATGGTTGCAACC
TACCTGACACTTTTATATGGCACGGCAGGCGCGACGGTGTTTGTGGGCGT
GAAAGCTTTGTTGAACAATGCTAATCGGTTGGAGCAAGAGGGAAGGGGTC
CAAGGCGAAACCTGCACTATGAGTAGTGGGATGTTGAGAACAGGGGGCTG
CAGAGTGAGATAAAGAAAGAATAAGCGAAGGAAAGACAGGTC
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Coding sequence (CDS) from alignment at chr9:944222..947263+

>NO09G03270.2 ID=NO09G03270.2|Name=NO09G03270.2|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr9:944222..947263+ (Nannochloropsis oceanica)
ATGGATACATCCACTCACCAGGGTGCTGTCCGCTTGGCCAAGAAACATTA
CATCACTTCCTCTCTATGGGTGGCCGGTCTCATCGTCCTGACCTTCTTCC
AAGGCTTCGCCGTGCCTGATGATAGCTTGAAACAATACGAGCACGTCATC
AAGGGCATCGACCTAAACAAGCTGTATGCTTTGCAGAATGATGCGTGGGC
CGCCGAAGAGATGTATCGGCAAAGTAAGGGCTGGTTCTCGTGTGACGATG
CTTGCCAGTCCTACAAGCGTGCCTGGCAATCGGCGCAAGCCAAGCTGCAC
AATCTCGAAAAGGAGCAAGAAAAAAAACAACGCGAAGCAAATAAGCACCT
GGGTGTCTTCTCTACCTACGGAGTTGACGAAGCCAAACAACTTTTTTGGA
GATCATTTAAGTGGGGCAAGTCTTTCGGGCAGCGACAGACGATGTTCGAC
ATGCTGTTCATGGGCTTTCGCGCCATGCGTCGGGATGAAGGCTTGTTGGA
GTACACTTTGCAGATTTTGATCCACTTCCTGCTCAACATGGCGTTGGGTC
TCTTCATGGCACTTACGGGTTTTACGCTCTCCCTCTGGTCGTTCATCCGC
TCCTACTCCCCTGATTTTTTGACGGGCTTGTTATTCTTCGCGGGCGCTTT
CGTGAGTGCCGCGGCGATGGTTGCAACCTACCTGACACTTTTATATGGCA
CGGCAGGCGCGACGGTGTTTGTGGGCGTGAAAGCTTTGTTGAACAATGCT
AATCGGTTGGAGCAAGAGGGAAGGGGTCCAAGGCGAAACCTGCACTATGA
GTAG
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Synonyms
Publications