NO09G03240.1, NO09G03240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03240.1
Unique NameNO09G03240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1413
Alignment locationchr9:938983..940395 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:938983..940395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03240.1 vs.
Match: XP_005853896.1 (hypothetical protein NGA_2114600 [Nannochloropsis gaditana CCMP526]; EKU22464.1 hypothetical protein NGA_2114600 [Nannochloropsis gaditana CCMP526]; EWM27471.1 Histone methylation DOT1 [Nannochloropsis gaditana])

HSP 1 Score: 474.2 bits (1219), Expect = 3.400e-130
Identity = 249/327 (76.15%), Postives = 281/327 (85.93%), Query Frame = 0 
Query:    2 MRVTVSATLFLAAGLCLDRSQAFLAPTPAQRPFSSSSSSLSRTSRSSHLTMALDPTSTVEALQHAGSILMAYTDDTKPTLNAEIIGVSSIAVFAGLAAVFSLLTKNLKAKNFAFTLSEAEQAAVDAVKSLYDPTEEDRSLTEAGTVGFVKRKALAEKAKEAYQKGRDDREVRDKTLYYAEIDPSFLAVLLRAANPSGGGIFYDLGSGAGRAVLAAAKLAKWKKAIGVEYLAGLHKEAVKYEGKFKRLGGSPTQFLNKDFTEVNISDAEVIFAYATKYSRDIDDVLATAPAGSRVISLDRRLNARKFKLLKTIEDPAGDLQLVFGYVY 329
            MR       FL  GL + +S AFL+P P+Q+  S+SS  LSRT  +  L   LD TST++ LQH G+ L+AYTDDTKPTLNAEIIGVSSI VFAGLA +F+LLTKNLK KNFAFTLSE EQAAVDAV++LYDP EED +LTEAGTVGFV+RK LAEKAKE+YQ+GRDDREVRDKTLYYAEID +FLAVLL AANPSG G+FYDLGSG GRAVL AAKLA+WKKAIGVEYL GLHKEA+KYEGKFKRL GSPTQF+NKDF +V++SDAEV+F YATKYSRDIDDVLATAP G+R+ISLDRRLNAR++KLLKTIEDP GDLQLVFGYVY
Sbjct:    1 MRNLCCNVAFLMLGLFIGQSGAFLSPLPSQKLLSTSS--LSRTRHAHSLVTGLDVTSTLDILQHTGNTLLAYTDDTKPTLNAEIIGVSSIGVFAGLAGIFALLTKNLKNKNFAFTLSEDEQAAVDAVEALYDPKEEDLALTEAGTVGFVRRKQLAEKAKESYQQGRDDREVRDKTLYYAEIDLAFLAVLLGAANPSGSGVFYDLGSGVGRAVLGAAKLARWKKAIGVEYLGGLHKEAIKYEGKFKRLRGSPTQFVNKDFVDVDLSDAEVVFIYATKYSRDIDDVLATAPVGARIISLDRRLNARQYKLLKTIEDPRGDLQLVFGYVY 325
The following BLAST results are available for this feature:
BLAST of NO09G03240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853896.13.400e-13076.15hypothetical protein NGA_2114600 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03240NO09G03240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03240.1NO09G03240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03240.1.cds1NO09G03240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03240.1 ID=NO09G03240.1|Name=NO09G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
AATATATGAACCAAAAGGAGGGGTGTTGTGACATCAGGCCGGCTCTTTTT
GATTGACAGCTCCAACACGACCACCTCACGATTCAAATAACATTTTTGGC
TTTGGAGCTTGCCACAAGCATTTCCTATGCTGAATCTCAAGCTTAGCAAA
CTTGCAGGATTGGCCGTGAGCCTGTCAGCGTGTTTTGGTCAAAGTCAGTT
TGGGCGTCGTTAATTGACGCACACTTGTAGCGAATGATGGTCGAGACGCC
ACGCACTCGGGCTTCGACACATGCCAACCAACCCAATCCTCCGACCACTC
ACACACACAAACCAGGCAAAGAATGATGCGCGTCACCGTCTCTGCGACGC
TCTTTCTAGCCGCAGGCTTGTGCCTGGACCGCAGCCAGGCCTTTTTGGCA
CCTACGCCCGCCCAACGTCCCTTCTCCTCCTCCTCCTCTTCCCTCTCCCG
CACAAGTCGCTCCTCCCACTTGACCATGGCCCTAGACCCCACCTCCACTG
TGGAGGCCTTACAGCACGCTGGGAGCATACTGATGGCTTACACGGACGAC
ACCAAGCCGACCCTGAACGCGGAGATCATTGGCGTCAGCAGCATTGCTGT
GTTTGCGGGTCTGGCGGCCGTCTTTTCCCTTCTCACGAAAAATTTGAAGG
CTAAGAACTTCGCCTTTACCCTGTCCGAAGCAGAGCAAGCTGCTGTCGAC
GCGGTGAAGTCTTTGTACGATCCGACGGAGGAAGACCGAAGCTTGACTGA
GGCCGGAACGGTGGGATTTGTCAAGAGAAAGGCGCTGGCCGAGAAGGCAA
AGGAGGCCTACCAGAAGGGCAGGGATGACCGTGAAGTGCGAGATAAGACG
CTTTACTATGCCGAGATTGATCCTAGCTTTTTGGCAGTCTTACTCCGTGC
CGCGAACCCCTCGGGTGGTGGGATCTTCTATGACCTGGGCTCTGGCGCGG
GACGGGCGGTTTTGGCAGCCGCCAAGCTGGCCAAGTGGAAGAAGGCAATC
GGGGTGGAGTATCTTGCAGGATTGCACAAGGAAGCTGTGAAGTACGAAGG
GAAGTTTAAGCGATTGGGTGGCTCCCCGACGCAATTTTTGAACAAGGATT
TCACAGAGGTGAATATTTCTGATGCTGAGGTTATTTTCGCGTACGCTACT
AAGTACTCGAGGGATATTGATGATGTGCTGGCCACAGCGCCTGCGGGCTC
ACGAGTCATTAGCTTGGATAGGCGGCTAAACGCTCGCAAGTTTAAATTAC
TCAAGACAATCGAGGATCCGGCCGGGGATTTGCAGTTGGTTTTTGGTTAC
GTGTATTTGACTCTCTAGGTCTGGGTCTTCGGGGAGGTAAGTTTGAAGGA
ATTGGTAATAAGGGATGGGCTAGCGATGATCATGCGAAAAAGCAAAAAAA
AGTTCTTTTTTTT
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protein sequence of NO09G03240.1

>NO09G03240.1-protein ID=NO09G03240.1-protein|Name=NO09G03240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=332bp
MMRVTVSATLFLAAGLCLDRSQAFLAPTPAQRPFSSSSSSLSRTSRSSHL
TMALDPTSTVEALQHAGSILMAYTDDTKPTLNAEIIGVSSIAVFAGLAAV
FSLLTKNLKAKNFAFTLSEAEQAAVDAVKSLYDPTEEDRSLTEAGTVGFV
KRKALAEKAKEAYQKGRDDREVRDKTLYYAEIDPSFLAVLLRAANPSGGG
IFYDLGSGAGRAVLAAAKLAKWKKAIGVEYLAGLHKEAVKYEGKFKRLGG
SPTQFLNKDFTEVNISDAEVIFAYATKYSRDIDDVLATAPAGSRVISLDR
RLNARKFKLLKTIEDPAGDLQLVFGYVYLTL*
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mRNA from alignment at chr9:938983..940395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03240.1 ID=NO09G03240.1|Name=NO09G03240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at chr9:938983..940395- (Nannochloropsis oceanica)
AATATATGAACCAAAAGGAGGGGTGTTGTGACATCAGGCCGGCTCTTTTT
GATTGACAGCTCCAACACGACCACCTCACGATTCAAATAACATTTTTGGC
TTTGGAGCTTGCCACAAGCATTTCCTATGCTGAATCTCAAGCTTAGCAAA
CTTGCAGGATTGGCCGTGAGCCTGTCAGCGTGTTTTGGTCAAAGTCAGTT
TGGGCGTCGTTAATTGACGCACACTTGTAGCGAATGATGGTCGAGACGCC
ACGCACTCGGGCTTCGACACATGCCAACCAACCCAATCCTCCGACCACTC
ACACACACAAACCAGGCAAAGAATGATGCGCGTCACCGTCTCTGCGACGC
TCTTTCTAGCCGCAGGCTTGTGCCTGGACCGCAGCCAGGCCTTTTTGGCA
CCTACGCCCGCCCAACGTCCCTTCTCCTCCTCCTCCTCTTCCCTCTCCCG
CACAAGTCGCTCCTCCCACTTGACCATGGCCCTAGACCCCACCTCCACTG
TGGAGGCCTTACAGCACGCTGGGAGCATACTGATGGCTTACACGGACGAC
ACCAAGCCGACCCTGAACGCGGAGATCATTGGCGTCAGCAGCATTGCTGT
GTTTGCGGGTCTGGCGGCCGTCTTTTCCCTTCTCACGAAAAATTTGAAGG
CTAAGAACTTCGCCTTTACCCTGTCCGAAGCAGAGCAAGCTGCTGTCGAC
GCGGTGAAGTCTTTGTACGATCCGACGGAGGAAGACCGAAGCTTGACTGA
GGCCGGAACGGTGGGATTTGTCAAGAGAAAGGCGCTGGCCGAGAAGGCAA
AGGAGGCCTACCAGAAGGGCAGGGATGACCGTGAAGTGCGAGATAAGACG
CTTTACTATGCCGAGATTGATCCTAGCTTTTTGGCAGTCTTACTCCGTGC
CGCGAACCCCTCGGGTGGTGGGATCTTCTATGACCTGGGCTCTGGCGCGG
GACGGGCGGTTTTGGCAGCCGCCAAGCTGGCCAAGTGGAAGAAGGCAATC
GGGGTGGAGTATCTTGCAGGATTGCACAAGGAAGCTGTGAAGTACGAAGG
GAAGTTTAAGCGATTGGGTGGCTCCCCGACGCAATTTTTGAACAAGGATT
TCACAGAGGTGAATATTTCTGATGCTGAGGTTATTTTCGCGTACGCTACT
AAGTACTCGAGGGATATTGATGATGTGCTGGCCACAGCGCCTGCGGGCTC
ACGAGTCATTAGCTTGGATAGGCGGCTAAACGCTCGCAAGTTTAAATTAC
TCAAGACAATCGAGGATCCGGCCGGGGATTTGCAGTTGGTTTTTGGTTAC
GTGTATTTGACTCTCTAGGTCTGGGTCTTCGGGGAGGTAAGTTTGAAGGA
ATTGGTAATAAGGGATGGGCTAGCGATGATCATGCGAAAAAGCAAAAAAA
AGTTCTTTTTTTT
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Coding sequence (CDS) from alignment at chr9:938983..940395-

>NO09G03240.1 ID=NO09G03240.1|Name=NO09G03240.1|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at chr9:938983..940395- (Nannochloropsis oceanica)
ATGATGCGCGTCACCGTCTCTGCGACGCTCTTTCTAGCCGCAGGCTTGTG
CCTGGACCGCAGCCAGGCCTTTTTGGCACCTACGCCCGCCCAACGTCCCT
TCTCCTCCTCCTCCTCTTCCCTCTCCCGCACAAGTCGCTCCTCCCACTTG
ACCATGGCCCTAGACCCCACCTCCACTGTGGAGGCCTTACAGCACGCTGG
GAGCATACTGATGGCTTACACGGACGACACCAAGCCGACCCTGAACGCGG
AGATCATTGGCGTCAGCAGCATTGCTGTGTTTGCGGGTCTGGCGGCCGTC
TTTTCCCTTCTCACGAAAAATTTGAAGGCTAAGAACTTCGCCTTTACCCT
GTCCGAAGCAGAGCAAGCTGCTGTCGACGCGGTGAAGTCTTTGTACGATC
CGACGGAGGAAGACCGAAGCTTGACTGAGGCCGGAACGGTGGGATTTGTC
AAGAGAAAGGCGCTGGCCGAGAAGGCAAAGGAGGCCTACCAGAAGGGCAG
GGATGACCGTGAAGTGCGAGATAAGACGCTTTACTATGCCGAGATTGATC
CTAGCTTTTTGGCAGTCTTACTCCGTGCCGCGAACCCCTCGGGTGGTGGG
ATCTTCTATGACCTGGGCTCTGGCGCGGGACGGGCGGTTTTGGCAGCCGC
CAAGCTGGCCAAGTGGAAGAAGGCAATCGGGGTGGAGTATCTTGCAGGAT
TGCACAAGGAAGCTGTGAAGTACGAAGGGAAGTTTAAGCGATTGGGTGGC
TCCCCGACGCAATTTTTGAACAAGGATTTCACAGAGGTGAATATTTCTGA
TGCTGAGGTTATTTTCGCGTACGCTACTAAGTACTCGAGGGATATTGATG
ATGTGCTGGCCACAGCGCCTGCGGGCTCACGAGTCATTAGCTTGGATAGG
CGGCTAAACGCTCGCAAGTTTAAATTACTCAAGACAATCGAGGATCCGGC
CGGGGATTTGCAGTTGGTTTTTGGTTACGTGTATTTGACTCTCTAG
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Synonyms
Publications