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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:933441..935028 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03220.1 vs.
Match: XP_002285969.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED95610.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 232.6 bits (592), Expect = 2.500e-57 Identity = 152/479 (31.73%), Postives = 245/479 (51.15%), Query Frame = 0
Query: 3 HKPLWPLDERDGAALACALISLAVAAFGGVGGGGILLPIYILVLDFRLKEAVALANATILGGAIANVWFASTKRHPFVDRPLIAWDLILLFEPVVIFGTVLGSFANKLLPDVIVEIILVLLYGALSYQTMSRAIQFMEKEG----GWQFLRKRLLPTTMNSPNAAVS-------------PCTEGPSGQAILSNETATHKEVDDTPNKIKSNGDSRMISERTPLFVSSADSDDDASYYSVSCSLDTDESFYNLPPSDTPKEVVVTRLKCQELSVRWWKPAAMTLCFAGMVSLRIGQKAVRCGSTAYWILTLGLIPWVLPFFLLARRHVIKDVKTKQLCGFPFQPGDVKWTTWNSVRWPLICSLAGVMSGMLGSSGGSIKAPLLLELGTPPTVVSATVAQMVMFTSASSSLALLVLGFMPTDYGPLLFAYGGLITFVTNWAASHFLGRRRTQSVPMLSIALIITLSTITMGLQAGVRLSE 465
HKPL PLD D A I L +AA GG+GGGG+L+PIYIL++ F K A+ L+N T+ GGA+AN KRHP DRPL+ WDLIL+ EP+ I G ++G+F NKLLP+ ++ + LV L SY T+ +AI+ + E + +RK T+ S ++ CT G L + T + D+T + + + S T ++ D++DD S +S + L E + +E V + Q L V + + + G +RCGS ++W+ +I W+L + AR ++++ + K+ GFP+ GD++W +V +PL+C+ AG +GM G GG +K PL+L +G P V SA+ A M++FTS +++ + +V G + DY + G + T V + + + + S SI I+ LS M +Q+ + +++
Sbjct: 86 HKPLLPLDSSDYYGFFFATIGLMIAAGGGIGGGGVLVPIYILIMGFSPKHAIPLSNITVFGGAVANTILNVRKRHPLADRPLVDWDLILVMEPLTIAGALIGAFLNKLLPEAVLVLSLVALLSFTSYTTLKKAIRMYKAESKALEAQRGVRKVRGDGTVESELTRLAREMEEDEEDEEEEGCTVG------LLDAAITTDDQDETESDANDEENGQPTSSNTD---TTNDNNDDESTFSTATDLKNKEELSKI----LSEERTVPKGNVQVLLVTFTVILFINIMKGG--GAFPSPLGIRCGSPSFWVSNGIMIGWILLVSVFARSYLVRRYEIKERVGFPYVEGDIRWDGRATVVYPLVCTAAGFFAGMFGVGGGIVKGPLMLAMGVHPKVSSASSACMILFTSFTATTSFVVFGLLDMDYATVCMTLGFVATLVGQIGLFYLMEKFQRNSYIAFSIGGIVLLSAFLMTIQSLLSMAD 549
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03220.1 ID=NO09G03220.1|Name=NO09G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1588bp CGTTCCATTACGCAGACATGCCGCATAAGCCGCTGTGGCCCCTAGATGAG CGGGACGGTGCCGCACTCGCCTGTGCCTTGATTTCTCTTGCAGTAGCTGC TTTTGGGGGGGTGGGCGGTGGTGGTATCTTGCTGCCCATTTACATCCTTG TCCTCGACTTTCGCCTCAAGGAAGCCGTCGCGTTGGCAAATGCCACGATC CTCGGTGGTGCCATCGCGAATGTGTGGTTCGCGTCGACAAAACGCCATCC TTTTGTCGATAGGCCGCTGATAGCGTGGGATTTGATCTTACTTTTTGAGC CCGTCGTGATTTTCGGTACCGTCCTCGGCTCCTTTGCCAACAAGCTCTTG CCCGATGTAATTGTCGAGATTATTTTGGTTCTCCTCTACGGAGCTCTTTC CTACCAGACGATGTCCCGTGCCATCCAGTTTATGGAGAAAGAGGGGGGCT GGCAATTTCTCCGCAAACGATTGCTGCCTACGACCATGAACTCACCCAAC GCAGCAGTTTCTCCCTGCACAGAAGGTCCATCCGGGCAAGCCATTCTATC TAACGAGACCGCTACCCACAAAGAAGTCGACGACACACCAAACAAGATTA AGAGCAACGGGGATTCTAGAATGATTTCCGAAAGGACACCATTGTTCGTG TCTTCTGCTGACAGCGACGACGATGCCTCCTATTATTCAGTCTCGTGCTC GCTTGATACCGACGAAAGCTTCTACAATTTGCCGCCATCAGACACCCCAA AGGAGGTTGTTGTGACGCGTCTCAAATGTCAGGAGCTGTCCGTGCGGTGG TGGAAGCCCGCCGCCATGACCTTATGTTTTGCGGGCATGGTATCCTTGCG GATTGGACAAAAGGCTGTCCGTTGTGGCTCCACTGCCTACTGGATCTTGA CACTAGGCCTCATTCCCTGGGTCTTGCCCTTCTTCCTTCTAGCACGCCGA CACGTTATCAAAGATGTTAAAACTAAACAACTTTGCGGCTTTCCTTTCCA ACCAGGTGATGTAAAATGGACTACGTGGAACAGTGTACGTTGGCCCCTAA TTTGCTCCCTTGCCGGTGTCATGAGCGGAATGCTTGGTTCGAGCGGTGGC AGTATTAAGGCCCCTTTGTTGCTGGAGCTGGGGACTCCGCCGACGGTTGT CTCTGCCACGGTTGCGCAGATGGTTATGTTCACCTCGGCGTCGTCGAGTT TGGCGTTGTTAGTCCTGGGTTTCATGCCCACAGATTATGGACCCCTTTTG TTCGCTTACGGCGGGCTGATAACGTTTGTGACAAATTGGGCCGCGTCCCA TTTCCTTGGTCGGCGGCGAACTCAGTCGGTGCCTATGCTAAGCATTGCTC TCATCATAACACTCAGCACAATTACGATGGGGTTGCAGGCAGGGGTGCGT CTATCGGAGGATCCGGCCGCGGCTAAGAAATTTGGACGCTTGTGCGATTG AGGTCTTGAATAAAGGAATCAGGCAGAACGGATAAAAAAGGATGAAAATA CAAAAGAATGAGAGGTTTGGAAGGAGTGAGGAGGAAGAAAGTGGAGGGAC AAGGAAAGAAAAACGAGAAAAGGAAAGAAGAGATCAAC back to topprotein sequence of NO09G03220.1 >NO09G03220.1-protein ID=NO09G03220.1-protein|Name=NO09G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp MPHKPLWPLDERDGAALACALISLAVAAFGGVGGGGILLPIYILVLDFRL KEAVALANATILGGAIANVWFASTKRHPFVDRPLIAWDLILLFEPVVIFG TVLGSFANKLLPDVIVEIILVLLYGALSYQTMSRAIQFMEKEGGWQFLRK RLLPTTMNSPNAAVSPCTEGPSGQAILSNETATHKEVDDTPNKIKSNGDS RMISERTPLFVSSADSDDDASYYSVSCSLDTDESFYNLPPSDTPKEVVVT RLKCQELSVRWWKPAAMTLCFAGMVSLRIGQKAVRCGSTAYWILTLGLIP WVLPFFLLARRHVIKDVKTKQLCGFPFQPGDVKWTTWNSVRWPLICSLAG VMSGMLGSSGGSIKAPLLLELGTPPTVVSATVAQMVMFTSASSSLALLVL GFMPTDYGPLLFAYGGLITFVTNWAASHFLGRRRTQSVPMLSIALIITLS TITMGLQAGVRLSEDPAAAKKFGRLCD* back to topmRNA from alignment at chr9:933441..935028+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03220.1 ID=NO09G03220.1|Name=NO09G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1588bp|location=Sequence derived from alignment at chr9:933441..935028+ (Nannochloropsis oceanica) CGTTCCATTACGCAGACATGCCGCATAAGCCGCTGTGGCCCCTAGATGAG
CGGGACGGTGCCGCACTCGCCTGTGCCTTGATTTCTCTTGCAGTAGCTGC
TTTTGGGGGGGTGGGCGGTGGTGGTATCTTGCTGCCCATTTACATCCTTG
TCCTCGACTTTCGCCTCAAGGAAGCCGTCGCGTTGGCAAATGCCACGATC
CTCGGTGGTGCCATCGCGAATGTGTGGTTCGCGTCGACAAAACGCCATCC
TTTTGTCGATAGGCCGCTGATAGCGTGGGATTTGATCTTACTTTTTGAGC
CCGTCGTGATTTTCGGTACCGTCCTCGGCTCCTTTGCCAACAAGCTCTTG
CCCGATGTAATTGTCGAGATTATTTTGGTTCTCCTCTACGGAGCTCTTTC
CTACCAGACGATGTCCCGTGCCATCCAGTTTATGGAGAAAGAGGGGGGCT
GGCAATTTCTCCGCAAACGATTGCTGCCTACGACCATGAACTCACCCAAC
GCAGCAGTTTCTCCCTGCACAGAAGGTCCATCCGGGCAAGCCATTCTATC
TAACGAGACCGCTACCCACAAAGAAGTCGACGACACACCAAACAAGATTA
AGAGCAACGGGGATTCTAGAATGATTTCCGAAAGGACACCATTGTTCGTG
TCTTCTGCTGACAGCGACGACGATGCCTCCTATTATTCAGTCTCGTGCTC
GCTTGATACCGACGAAAGCTTCTACAATTTGCCGCCATCAGACACCCCAA
AGGAGGTTGTTGTGACGCGTCTCAAATGTCAGGAGCTGTCCGTGCGGTGG
TGGAAGCCCGCCGCCATGACCTTATGTTTTGCGGGCATGGTATCCTTGCG
GATTGGACAAAAGGCTGTCCGTTGTGGCTCCACTGCCTACTGGATCTTGA
CACTAGGCCTCATTCCCTGGGTCTTGCCCTTCTTCCTTCTAGCACGCCGA
CACGTTATCAAAGATGTTAAAACTAAACAACTTTGCGGCTTTCCTTTCCA
ACCAGGTGATGTAAAATGGACTACGTGGAACAGTGTACGTTGGCCCCTAA
TTTGCTCCCTTGCCGGTGTCATGAGCGGAATGCTTGGTTCGAGCGGTGGC
AGTATTAAGGCCCCTTTGTTGCTGGAGCTGGGGACTCCGCCGACGGTTGT
CTCTGCCACGGTTGCGCAGATGGTTATGTTCACCTCGGCGTCGTCGAGTT
TGGCGTTGTTAGTCCTGGGTTTCATGCCCACAGATTATGGACCCCTTTTG
TTCGCTTACGGCGGGCTGATAACGTTTGTGACAAATTGGGCCGCGTCCCA
TTTCCTTGGTCGGCGGCGAACTCAGTCGGTGCCTATGCTAAGCATTGCTC
TCATCATAACACTCAGCACAATTACGATGGGGTTGCAGGCAGGGGTGCGT
CTATCGGAGGATCCGGCCGCGGCTAAGAAATTTGGACGCTTGTGCGATTG
AGGTCTTGAATAAAGGAATCAGGCAGAACGGATAAAAAAGGATGAAAATA
CAAAAGAATGAGAGGTTTGGAAGGAGTGAGGAGGAAGAAAGTGGAGGGAC
AAGGAAAGAAAAACGAGAAAAGGAAAGAAGAGATCAAC back to topCoding sequence (CDS) from alignment at chr9:933441..935028+ >NO09G03220.1 ID=NO09G03220.1|Name=NO09G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr9:933441..935028+ (Nannochloropsis oceanica) ATGCCGCATAAGCCGCTGTGGCCCCTAGATGAGCGGGACGGTGCCGCACT CGCCTGTGCCTTGATTTCTCTTGCAGTAGCTGCTTTTGGGGGGGTGGGCG GTGGTGGTATCTTGCTGCCCATTTACATCCTTGTCCTCGACTTTCGCCTC AAGGAAGCCGTCGCGTTGGCAAATGCCACGATCCTCGGTGGTGCCATCGC GAATGTGTGGTTCGCGTCGACAAAACGCCATCCTTTTGTCGATAGGCCGC TGATAGCGTGGGATTTGATCTTACTTTTTGAGCCCGTCGTGATTTTCGGT ACCGTCCTCGGCTCCTTTGCCAACAAGCTCTTGCCCGATGTAATTGTCGA GATTATTTTGGTTCTCCTCTACGGAGCTCTTTCCTACCAGACGATGTCCC GTGCCATCCAGTTTATGGAGAAAGAGGGGGGCTGGCAATTTCTCCGCAAA CGATTGCTGCCTACGACCATGAACTCACCCAACGCAGCAGTTTCTCCCTG CACAGAAGGTCCATCCGGGCAAGCCATTCTATCTAACGAGACCGCTACCC ACAAAGAAGTCGACGACACACCAAACAAGATTAAGAGCAACGGGGATTCT AGAATGATTTCCGAAAGGACACCATTGTTCGTGTCTTCTGCTGACAGCGA CGACGATGCCTCCTATTATTCAGTCTCGTGCTCGCTTGATACCGACGAAA GCTTCTACAATTTGCCGCCATCAGACACCCCAAAGGAGGTTGTTGTGACG CGTCTCAAATGTCAGGAGCTGTCCGTGCGGTGGTGGAAGCCCGCCGCCAT GACCTTATGTTTTGCGGGCATGGTATCCTTGCGGATTGGACAAAAGGCTG TCCGTTGTGGCTCCACTGCCTACTGGATCTTGACACTAGGCCTCATTCCC TGGGTCTTGCCCTTCTTCCTTCTAGCACGCCGACACGTTATCAAAGATGT TAAAACTAAACAACTTTGCGGCTTTCCTTTCCAACCAGGTGATGTAAAAT GGACTACGTGGAACAGTGTACGTTGGCCCCTAATTTGCTCCCTTGCCGGT GTCATGAGCGGAATGCTTGGTTCGAGCGGTGGCAGTATTAAGGCCCCTTT GTTGCTGGAGCTGGGGACTCCGCCGACGGTTGTCTCTGCCACGGTTGCGC AGATGGTTATGTTCACCTCGGCGTCGTCGAGTTTGGCGTTGTTAGTCCTG GGTTTCATGCCCACAGATTATGGACCCCTTTTGTTCGCTTACGGCGGGCT GATAACGTTTGTGACAAATTGGGCCGCGTCCCATTTCCTTGGTCGGCGGC GAACTCAGTCGGTGCCTATGCTAAGCATTGCTCTCATCATAACACTCAGC ACAATTACGATGGGGTTGCAGGCAGGGGTGCGTCTATCGGAGGATCCGGC CGCGGCTAAGAAATTTGGACGCTTGTGCGATTGA back to top
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