NO09G03220.1, NO09G03220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03220.1
Unique NameNO09G03220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1588
Alignment locationchr9:933441..935028 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:933441..935028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G03220.1 vs.
Match: XP_002285969.1 (predicted protein [Thalassiosira pseudonana CCMP1335]; EED95610.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 232.6 bits (592), Expect = 2.500e-57
Identity = 152/479 (31.73%), Postives = 245/479 (51.15%), Query Frame = 0
Query:    3 HKPLWPLDERDGAALACALISLAVAAFGGVGGGGILLPIYILVLDFRLKEAVALANATILGGAIANVWFASTKRHPFVDRPLIAWDLILLFEPVVIFGTVLGSFANKLLPDVIVEIILVLLYGALSYQTMSRAIQFMEKEG----GWQFLRKRLLPTTMNSPNAAVS-------------PCTEGPSGQAILSNETATHKEVDDTPNKIKSNGDSRMISERTPLFVSSADSDDDASYYSVSCSLDTDESFYNLPPSDTPKEVVVTRLKCQELSVRWWKPAAMTLCFAGMVSLRIGQKAVRCGSTAYWILTLGLIPWVLPFFLLARRHVIKDVKTKQLCGFPFQPGDVKWTTWNSVRWPLICSLAGVMSGMLGSSGGSIKAPLLLELGTPPTVVSATVAQMVMFTSASSSLALLVLGFMPTDYGPLLFAYGGLITFVTNWAASHFLGRRRTQSVPMLSIALIITLSTITMGLQAGVRLSE 465
            HKPL PLD  D      A I L +AA GG+GGGG+L+PIYIL++ F  K A+ L+N T+ GGA+AN      KRHP  DRPL+ WDLIL+ EP+ I G ++G+F NKLLP+ ++ + LV L    SY T+ +AI+  + E       + +RK     T+ S    ++              CT G      L +   T  + D+T +      + +  S  T    ++ D++DD S +S +  L   E    +      +E  V +   Q L V +     + +   G          +RCGS ++W+    +I W+L   + AR ++++  + K+  GFP+  GD++W    +V +PL+C+ AG  +GM G  GG +K PL+L +G  P V SA+ A M++FTS +++ + +V G +  DY  +    G + T V      + + + +  S    SI  I+ LS   M +Q+ + +++
Sbjct:   86 HKPLLPLDSSDYYGFFFATIGLMIAAGGGIGGGGVLVPIYILIMGFSPKHAIPLSNITVFGGAVANTILNVRKRHPLADRPLVDWDLILVMEPLTIAGALIGAFLNKLLPEAVLVLSLVALLSFTSYTTLKKAIRMYKAESKALEAQRGVRKVRGDGTVESELTRLAREMEEDEEDEEEEGCTVG------LLDAAITTDDQDETESDANDEENGQPTSSNTD---TTNDNNDDESTFSTATDLKNKEELSKI----LSEERTVPKGNVQVLLVTFTVILFINIMKGG--GAFPSPLGIRCGSPSFWVSNGIMIGWILLVSVFARSYLVRRYEIKERVGFPYVEGDIRWDGRATVVYPLVCTAAGFFAGMFGVGGGIVKGPLMLAMGVHPKVSSASSACMILFTSFTATTSFVVFGLLDMDYATVCMTLGFVATLVGQIGLFYLMEKFQRNSYIAFSIGGIVLLSAFLMTIQSLLSMAD 549          
The following BLAST results are available for this feature:
BLAST of NO09G03220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_002285969.12.500e-5731.73predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03220NO09G03220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03220.1NO09G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03220.1.cds1NO09G03220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03220.1 ID=NO09G03220.1|Name=NO09G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1588bp
CGTTCCATTACGCAGACATGCCGCATAAGCCGCTGTGGCCCCTAGATGAG
CGGGACGGTGCCGCACTCGCCTGTGCCTTGATTTCTCTTGCAGTAGCTGC
TTTTGGGGGGGTGGGCGGTGGTGGTATCTTGCTGCCCATTTACATCCTTG
TCCTCGACTTTCGCCTCAAGGAAGCCGTCGCGTTGGCAAATGCCACGATC
CTCGGTGGTGCCATCGCGAATGTGTGGTTCGCGTCGACAAAACGCCATCC
TTTTGTCGATAGGCCGCTGATAGCGTGGGATTTGATCTTACTTTTTGAGC
CCGTCGTGATTTTCGGTACCGTCCTCGGCTCCTTTGCCAACAAGCTCTTG
CCCGATGTAATTGTCGAGATTATTTTGGTTCTCCTCTACGGAGCTCTTTC
CTACCAGACGATGTCCCGTGCCATCCAGTTTATGGAGAAAGAGGGGGGCT
GGCAATTTCTCCGCAAACGATTGCTGCCTACGACCATGAACTCACCCAAC
GCAGCAGTTTCTCCCTGCACAGAAGGTCCATCCGGGCAAGCCATTCTATC
TAACGAGACCGCTACCCACAAAGAAGTCGACGACACACCAAACAAGATTA
AGAGCAACGGGGATTCTAGAATGATTTCCGAAAGGACACCATTGTTCGTG
TCTTCTGCTGACAGCGACGACGATGCCTCCTATTATTCAGTCTCGTGCTC
GCTTGATACCGACGAAAGCTTCTACAATTTGCCGCCATCAGACACCCCAA
AGGAGGTTGTTGTGACGCGTCTCAAATGTCAGGAGCTGTCCGTGCGGTGG
TGGAAGCCCGCCGCCATGACCTTATGTTTTGCGGGCATGGTATCCTTGCG
GATTGGACAAAAGGCTGTCCGTTGTGGCTCCACTGCCTACTGGATCTTGA
CACTAGGCCTCATTCCCTGGGTCTTGCCCTTCTTCCTTCTAGCACGCCGA
CACGTTATCAAAGATGTTAAAACTAAACAACTTTGCGGCTTTCCTTTCCA
ACCAGGTGATGTAAAATGGACTACGTGGAACAGTGTACGTTGGCCCCTAA
TTTGCTCCCTTGCCGGTGTCATGAGCGGAATGCTTGGTTCGAGCGGTGGC
AGTATTAAGGCCCCTTTGTTGCTGGAGCTGGGGACTCCGCCGACGGTTGT
CTCTGCCACGGTTGCGCAGATGGTTATGTTCACCTCGGCGTCGTCGAGTT
TGGCGTTGTTAGTCCTGGGTTTCATGCCCACAGATTATGGACCCCTTTTG
TTCGCTTACGGCGGGCTGATAACGTTTGTGACAAATTGGGCCGCGTCCCA
TTTCCTTGGTCGGCGGCGAACTCAGTCGGTGCCTATGCTAAGCATTGCTC
TCATCATAACACTCAGCACAATTACGATGGGGTTGCAGGCAGGGGTGCGT
CTATCGGAGGATCCGGCCGCGGCTAAGAAATTTGGACGCTTGTGCGATTG
AGGTCTTGAATAAAGGAATCAGGCAGAACGGATAAAAAAGGATGAAAATA
CAAAAGAATGAGAGGTTTGGAAGGAGTGAGGAGGAAGAAAGTGGAGGGAC
AAGGAAAGAAAAACGAGAAAAGGAAAGAAGAGATCAAC
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protein sequence of NO09G03220.1

>NO09G03220.1-protein ID=NO09G03220.1-protein|Name=NO09G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MPHKPLWPLDERDGAALACALISLAVAAFGGVGGGGILLPIYILVLDFRL
KEAVALANATILGGAIANVWFASTKRHPFVDRPLIAWDLILLFEPVVIFG
TVLGSFANKLLPDVIVEIILVLLYGALSYQTMSRAIQFMEKEGGWQFLRK
RLLPTTMNSPNAAVSPCTEGPSGQAILSNETATHKEVDDTPNKIKSNGDS
RMISERTPLFVSSADSDDDASYYSVSCSLDTDESFYNLPPSDTPKEVVVT
RLKCQELSVRWWKPAAMTLCFAGMVSLRIGQKAVRCGSTAYWILTLGLIP
WVLPFFLLARRHVIKDVKTKQLCGFPFQPGDVKWTTWNSVRWPLICSLAG
VMSGMLGSSGGSIKAPLLLELGTPPTVVSATVAQMVMFTSASSSLALLVL
GFMPTDYGPLLFAYGGLITFVTNWAASHFLGRRRTQSVPMLSIALIITLS
TITMGLQAGVRLSEDPAAAKKFGRLCD*
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mRNA from alignment at chr9:933441..935028+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03220.1 ID=NO09G03220.1|Name=NO09G03220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1588bp|location=Sequence derived from alignment at chr9:933441..935028+ (Nannochloropsis oceanica)
CGTTCCATTACGCAGACATGCCGCATAAGCCGCTGTGGCCCCTAGATGAG CGGGACGGTGCCGCACTCGCCTGTGCCTTGATTTCTCTTGCAGTAGCTGC TTTTGGGGGGGTGGGCGGTGGTGGTATCTTGCTGCCCATTTACATCCTTG TCCTCGACTTTCGCCTCAAGGAAGCCGTCGCGTTGGCAAATGCCACGATC CTCGGTGGTGCCATCGCGAATGTGTGGTTCGCGTCGACAAAACGCCATCC TTTTGTCGATAGGCCGCTGATAGCGTGGGATTTGATCTTACTTTTTGAGC CCGTCGTGATTTTCGGTACCGTCCTCGGCTCCTTTGCCAACAAGCTCTTG CCCGATGTAATTGTCGAGATTATTTTGGTTCTCCTCTACGGAGCTCTTTC CTACCAGACGATGTCCCGTGCCATCCAGTTTATGGAGAAAGAGGGGGGCT GGCAATTTCTCCGCAAACGATTGCTGCCTACGACCATGAACTCACCCAAC GCAGCAGTTTCTCCCTGCACAGAAGGTCCATCCGGGCAAGCCATTCTATC TAACGAGACCGCTACCCACAAAGAAGTCGACGACACACCAAACAAGATTA AGAGCAACGGGGATTCTAGAATGATTTCCGAAAGGACACCATTGTTCGTG TCTTCTGCTGACAGCGACGACGATGCCTCCTATTATTCAGTCTCGTGCTC GCTTGATACCGACGAAAGCTTCTACAATTTGCCGCCATCAGACACCCCAA AGGAGGTTGTTGTGACGCGTCTCAAATGTCAGGAGCTGTCCGTGCGGTGG TGGAAGCCCGCCGCCATGACCTTATGTTTTGCGGGCATGGTATCCTTGCG GATTGGACAAAAGGCTGTCCGTTGTGGCTCCACTGCCTACTGGATCTTGA CACTAGGCCTCATTCCCTGGGTCTTGCCCTTCTTCCTTCTAGCACGCCGA CACGTTATCAAAGATGTTAAAACTAAACAACTTTGCGGCTTTCCTTTCCA ACCAGGTGATGTAAAATGGACTACGTGGAACAGTGTACGTTGGCCCCTAA TTTGCTCCCTTGCCGGTGTCATGAGCGGAATGCTTGGTTCGAGCGGTGGC AGTATTAAGGCCCCTTTGTTGCTGGAGCTGGGGACTCCGCCGACGGTTGT CTCTGCCACGGTTGCGCAGATGGTTATGTTCACCTCGGCGTCGTCGAGTT TGGCGTTGTTAGTCCTGGGTTTCATGCCCACAGATTATGGACCCCTTTTG TTCGCTTACGGCGGGCTGATAACGTTTGTGACAAATTGGGCCGCGTCCCA TTTCCTTGGTCGGCGGCGAACTCAGTCGGTGCCTATGCTAAGCATTGCTC TCATCATAACACTCAGCACAATTACGATGGGGTTGCAGGCAGGGGTGCGT CTATCGGAGGATCCGGCCGCGGCTAAGAAATTTGGACGCTTGTGCGATTG AGGTCTTGAATAAAGGAATCAGGCAGAACGGATAAAAAAGGATGAAAATA CAAAAGAATGAGAGGTTTGGAAGGAGTGAGGAGGAAGAAAGTGGAGGGAC AAGGAAAGAAAAACGAGAAAAGGAAAGAAGAGATCAAC
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Coding sequence (CDS) from alignment at chr9:933441..935028+

>NO09G03220.1 ID=NO09G03220.1|Name=NO09G03220.1|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at chr9:933441..935028+ (Nannochloropsis oceanica)
ATGCCGCATAAGCCGCTGTGGCCCCTAGATGAGCGGGACGGTGCCGCACT
CGCCTGTGCCTTGATTTCTCTTGCAGTAGCTGCTTTTGGGGGGGTGGGCG
GTGGTGGTATCTTGCTGCCCATTTACATCCTTGTCCTCGACTTTCGCCTC
AAGGAAGCCGTCGCGTTGGCAAATGCCACGATCCTCGGTGGTGCCATCGC
GAATGTGTGGTTCGCGTCGACAAAACGCCATCCTTTTGTCGATAGGCCGC
TGATAGCGTGGGATTTGATCTTACTTTTTGAGCCCGTCGTGATTTTCGGT
ACCGTCCTCGGCTCCTTTGCCAACAAGCTCTTGCCCGATGTAATTGTCGA
GATTATTTTGGTTCTCCTCTACGGAGCTCTTTCCTACCAGACGATGTCCC
GTGCCATCCAGTTTATGGAGAAAGAGGGGGGCTGGCAATTTCTCCGCAAA
CGATTGCTGCCTACGACCATGAACTCACCCAACGCAGCAGTTTCTCCCTG
CACAGAAGGTCCATCCGGGCAAGCCATTCTATCTAACGAGACCGCTACCC
ACAAAGAAGTCGACGACACACCAAACAAGATTAAGAGCAACGGGGATTCT
AGAATGATTTCCGAAAGGACACCATTGTTCGTGTCTTCTGCTGACAGCGA
CGACGATGCCTCCTATTATTCAGTCTCGTGCTCGCTTGATACCGACGAAA
GCTTCTACAATTTGCCGCCATCAGACACCCCAAAGGAGGTTGTTGTGACG
CGTCTCAAATGTCAGGAGCTGTCCGTGCGGTGGTGGAAGCCCGCCGCCAT
GACCTTATGTTTTGCGGGCATGGTATCCTTGCGGATTGGACAAAAGGCTG
TCCGTTGTGGCTCCACTGCCTACTGGATCTTGACACTAGGCCTCATTCCC
TGGGTCTTGCCCTTCTTCCTTCTAGCACGCCGACACGTTATCAAAGATGT
TAAAACTAAACAACTTTGCGGCTTTCCTTTCCAACCAGGTGATGTAAAAT
GGACTACGTGGAACAGTGTACGTTGGCCCCTAATTTGCTCCCTTGCCGGT
GTCATGAGCGGAATGCTTGGTTCGAGCGGTGGCAGTATTAAGGCCCCTTT
GTTGCTGGAGCTGGGGACTCCGCCGACGGTTGTCTCTGCCACGGTTGCGC
AGATGGTTATGTTCACCTCGGCGTCGTCGAGTTTGGCGTTGTTAGTCCTG
GGTTTCATGCCCACAGATTATGGACCCCTTTTGTTCGCTTACGGCGGGCT
GATAACGTTTGTGACAAATTGGGCCGCGTCCCATTTCCTTGGTCGGCGGC
GAACTCAGTCGGTGCCTATGCTAAGCATTGCTCTCATCATAACACTCAGC
ACAATTACGATGGGGTTGCAGGCAGGGGTGCGTCTATCGGAGGATCCGGC
CGCGGCTAAGAAATTTGGACGCTTGTGCGATTGA
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Synonyms
Publications