NO09G03210.1, NO09G03210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03210.1
Unique NameNO09G03210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1884
Alignment locationchr9:930365..932402 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:930365..932402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G03210.1 vs.
Match: EWM27483.1 (Mak16 protein [Nannochloropsis gaditana])

HSP 1 Score: 381.7 bits (979), Expect = 2.900e-102
Identity = 232/304 (76.32%), Postives = 254/304 (83.55%), Query Frame = 0 
Query:   87 FLPRINAKEQTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKVRLPTNYAKALEKVSKELEFFPKYLQHRNKQRLTKIHQYLIRMRKLKLKVNKPKLVGIHKKVERREKKREAKALAAAKLDQSIEKELLERLKQGTYGDIYNFPETAYNKVLDEEGEDQEEEEEEEEEEGGSGLEEGEEYVEGEDEEDESESEEEEEEEEEEREFVEGDYEEEEDMEDGGSYMLEDEGE-FDEEAAMASMRTAAAGGSKKRGRGVGIGGEGKTGKGGTGVAVKKPAAKKGK 390
            F  +INAKE TFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEK+RLP+NYAKALEKVS+ LE+FPKYLQHRNKQRLTKIHQYLIRMR+LKLK NKPKLVGIHKKV+RREKKREAKALAAAKL+Q+IEKELL RL+QGTYGDIYNFPET Y+KVLDEEGED+EEEEEEEEEE        EEYVEGE+EE     E EEEEEEEEREFV GD+EEEEDMEDG SY+LE+E E +DE  A A +R  A G   KRGR     GE K  +G  GVAV     ++G+
Sbjct:   19 FKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGEDEEEEEEEEEEEE-------EEYVEGEEEE-----ESEEEEEEEEREFVTGDFEEEEDMEDGASYLLEEEEEDYDEVKAKAVLRAEAKG--NKRGR-----GERKAERGRRGVAVTLRNRRRGR 303
The following BLAST results are available for this feature:
BLAST of NO09G03210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27483.12.900e-10276.32Mak16 protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03210NO09G03210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03210.1NO09G03210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03210.1.cds1NO09G03210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03210.1.cds2NO09G03210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03210.1 ID=NO09G03210.1|Name=NO09G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp
GGGGAGGGAGGGTACGCAAATGGAGAGATAAGGAAAGGCATGGGAGGCTT
GCCGTCGTGAGTGTCGGTAGAATACTGGCATTGCAACTGCAGGGAGAGTT
GTCCCAAAGGCATGGGTCAGGAAGTCGTCATTTTCCCACCGTCCTCAGTC
CCACGCACGCAGCAAGCGATGAGACAGGATATGCGCAGCCCTGTGATGAA
GAGGTGGGCAGTGGCAGAGAAGACAACATCGGGCTGGCACCAAGTGCCAA
AATCCCTGCCAACATCTACCAACTCCACAATAACAAGACCATGGCGTGCG
CCTCTGTGATGGGATGGCGGTGGCTTACAGGAAATTAAATACTACCATGG
CAAGAAGAAGCTCGCTAGTGGCGGCCCACCACCACTTGCTCCAGATACGA
ATTTGCCCATGTTTTAGTTCCTTTGCAGCGTAAATACCCCAGAAGTTCCA
AGCTTCGGGACAAAGCAGCGTCAAAGATAATGAGGACGAGGATGTCCTCG
TGCTTGGTTGGTCGCCGCAATTTTTGTTTGGTCTAGGATCAATCCTCACA
ACGCGCTGACCGACCTCCCCATCCACAGACACCACCCACTCAACCAAGCA
CTCTACGCAGTTAAATAAACAGCAGCAGCAGCCATGAGTGCCCCCGACGA
GATCATCTGGCAGATAATCAACCATCAATTCTGCTCCTTCAAATCCAAGT
ATGTGCAAAAATGGTCCCTGCAGGCTCTCTTCTCCCTCCCCCTCCCTTCT
CCCTGCTCCCTCTCACCAACCTCACAGGCTCATGTATCATCATCATCAGG
AATCATGTCCTGCTTCTCCCTGACCATGCACTATCCCACCAATTCTCTTC
TTTTCTCATTTAATGTCTTCTTCCTCTTCCACCTTTATCCGTTCCTCCCC
AGAATCAATGCCAAAGAACAAACCTTTTGCCGCAACCCCTACAATGTCAC
GGGCTTATGCCTTCGGTCCGCCTGCCCACTGGCCAATAGTCGTTACGCCA
CCATCCGCGAAGAAGAAGGTCATTGCTATCTATTGCTCAAGACGGCCGAA
CGCGCCCACACCCCTGCCAAGCTGTGGGAGAAGGTCCGCCTGCCTACCAA
CTACGCCAAGGCCCTGGAGAAAGTGTCGAAGGAATTGGAGTTTTTTCCCA
AATACCTGCAGCATCGAAACAAGCAACGACTGACTAAGATCCACCAGTAT
TTGATTCGCATGCGCAAATTGAAATTAAAAGTCAATAAGCCGAAGTTGGT
CGGGATTCACAAGAAGGTCGAACGCCGTGAGAAAAAGCGCGAAGCCAAGG
CACTAGCAGCCGCCAAGCTGGACCAGAGCATCGAGAAGGAGCTGTTGGAG
CGGTTGAAGCAAGGGACGTATGGTGATATTTACAATTTTCCCGAGACGGC
CTACAACAAGGTGTTGGACGAGGAGGGGGAAGATCAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGGGGGGAGCGGGTTGGAGGAGGGGGAGGAGTAT
GTGGAGGGAGAGGATGAGGAGGATGAGAGCGAGAGCGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGAGGGAATTTGTCGAAGGTGACTACGAGGAAGAGG
AGGACATGGAGGATGGAGGGTCATACATGCTAGAGGATGAAGGTGAGTTT
GATGAGGAGGCAGCCATGGCCTCGATGCGCACGGCGGCAGCAGGGGGAAG
CAAGAAGAGAGGGAGGGGGGTTGGGATTGGAGGAGAAGGTAAAACAGGTA
AGGGCGGAACGGGAGTAGCCGTCAAAAAGCCGGCGGCGAAGAAGGGAAAG
AAGGTGGCGCATCCGCATGTGGAGGTGGAGTACGAGCATGAAGACGAGGA
GGTGGAGGTGCAGGCGGGGGGAGGCTCGTGGTGA
back to top

protein sequence of NO09G03210.1

>NO09G03210.1-protein ID=NO09G03210.1-protein|Name=NO09G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MSAPDEIIWQIINHQFCSFKSKYVQKWSLQALFSLPLPSPCSLSPTSQAH
VSSSSGIMSCFSLTMHYPTNSLLFSFNVFFLFHLYPFLPRINAKEQTFCR
NPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEK
VRLPTNYAKALEKVSKELEFFPKYLQHRNKQRLTKIHQYLIRMRKLKLKV
NKPKLVGIHKKVERREKKREAKALAAAKLDQSIEKELLERLKQGTYGDIY
NFPETAYNKVLDEEGEDQEEEEEEEEEEGGSGLEEGEEYVEGEDEEDESE
SEEEEEEEEEEREFVEGDYEEEEDMEDGGSYMLEDEGEFDEEAAMASMRT
AAAGGSKKRGRGVGIGGEGKTGKGGTGVAVKKPAAKKGKKVAHPHVEVEY
EHEDEEVEVQAGGGSW*
back to top

mRNA from alignment at chr9:930365..932402+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03210.1 ID=NO09G03210.1|Name=NO09G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2038bp|location=Sequence derived from alignment at chr9:930365..932402+ (Nannochloropsis oceanica)
GGGGAGGGAGGGTACGCAAATGGAGAGATAAGGAAAGGCATGGGAGGCTT
GCCGTCGTGAGTGTCGGTAGAATACTGGCATTGCAACTGCAGGGAGAGTT
GTCCCAAAGGCATGGGTCAGGAAGTCGTCATTTTCCCACCGTCCTCAGTC
CCACGCACGCAGCAAGCGATGAGACAGGATATGCGCAGCCCTGTGATGAA
GAGGTGGGCAGTGGCAGAGAAGACAACATCGGGCTGGCACCAAGTGCCAA
AATCCCTGCCAACATCTACCAACTCCACAATAACAAGACCATGGCGTGCG
CCTCTGTGATGGGATGGCGGTGGCTTACAGGAAATTAAATACTACCATGG
CAAGAAGAAGCTCGCTAGTGGCGGCCCACCACCACTTGCTCCAGATACGA
ATTTGCCCATGTTTTAGTTCCTTTGCAGCGTAAATACCCCAGAAGTTCCA
AGCTTCGGGACAAAGCAGCGTCAAAGATAATGAGGACGAGGATGTCCTCG
TGCTTGGTTGGTCGCCGCAATTTTTGTTTGGTCTAGGATCAATCCTCACA
ACGCGCTGACCGACCTCCCCATCCACAGACACCACCCACTCAACCAAGCA
CTCTACGCAGTTAAATAAACAGCAGCAGCAGCCATGAGTGCCCCCGACGA
GATCATCTGGCAGATAATCAACCATCAATTCTGCTCCTTCAAATCCAAGT
ATGTGCAAAAATGGTCCCTGCAGGCTCTCTTCTCCCTCCCCCTCCCTTCT
CCCTGCTCCCTCTCACCAACCTCACAGGCTCATGTATCATCATCATCAGG
AATCATGTCCTGCTTCTCCCTGACCATGCACTATCCCACCAATTCTCTTC
TTTTCTCATTTAATGTCTTCTTCCTCTTCCACCTTTATCCGTTCCTCCCC
AGAATCAATGCCAAAGAACAAACCTTTTGCCGCAACCCCTACAATGTCAC
GGGCTTATGCCTTCGGTCCGCCTGCCCACTGGCCAATAGTCGTTACGCCA
CCATCCGCGAAGAAGAAGGTCATTGCTATCTATTGCTCAAGACGGCCGAA
CGCGCCCACACCCCTGCCAAGCTGTGGGAGAAGGTCCGCCTGCCTACCAA
CTACGCCAAGGCCCTGGAGAAAGTGTCGAAGGAATTGGAGTTTTTTCCCA
AATACCTGCAGCATCGAAACAAGCAACGACTGACTAAGATCCACCAGTAT
TTGATTCGCATGCGCAAATTGAAATTAAAAGTCAATAAGCCGAAGTTGGT
CGGGATTCACAAGAAGGTACTAGAAGTCCTCCCTCCACCCCTTCCTCCCT
CCCTCCCCTCTATTTTCCTTCCTGATATTATGGATGCTGTAGGGCTAGAT
CTCCCACCCCTTTTTTAACCCTCTTTTCTCACCACTTTTCCCCTCCTTCC
CTCTGTTTTTGTTTTCCCAGGTCGAACGCCGTGAGAAAAAGCGCGAAGCC
AAGGCACTAGCAGCCGCCAAGCTGGACCAGAGCATCGAGAAGGAGCTGTT
GGAGCGGTTGAAGCAAGGGACGTATGGTGATATTTACAATTTTCCCGAGA
CGGCCTACAACAAGGTGTTGGACGAGGAGGGGGAAGATCAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGGGGGAGCGGGTTGGAGGAGGGGGAGGA
GTATGTGGAGGGAGAGGATGAGGAGGATGAGAGCGAGAGCGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGAGGGAATTTGTCGAAGGTGACTACGAGGAA
GAGGAGGACATGGAGGATGGAGGGTCATACATGCTAGAGGATGAAGGTGA
GTTTGATGAGGAGGCAGCCATGGCCTCGATGCGCACGGCGGCAGCAGGGG
GAAGCAAGAAGAGAGGGAGGGGGGTTGGGATTGGAGGAGAAGGTAAAACA
GGTAAGGGCGGAACGGGAGTAGCCGTCAAAAAGCCGGCGGCGAAGAAGGG
AAAGAAGGTGGCGCATCCGCATGTGGAGGTGGAGTACGAGCATGAAGACG
AGGAGGTGGAGGTGCAGGCGGGGGGAGGCTCGTGGTGA
back to top

Coding sequence (CDS) from alignment at chr9:930365..932402+

>NO09G03210.1 ID=NO09G03210.1|Name=NO09G03210.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr9:930365..932402+ (Nannochloropsis oceanica)
ATGAGTGCCCCCGACGAGATCATCTGGCAGATAATCAACCATCAATTCTG
CTCCTTCAAATCCAAGTATGTGCAAAAATGGTCCCTGCAGGCTCTCTTCT
CCCTCCCCCTCCCTTCTCCCTGCTCCCTCTCACCAACCTCACAGGCTCAT
GTATCATCATCATCAGGAATCATGTCCTGCTTCTCCCTGACCATGCACTA
TCCCACCAATTCTCTTCTTTTCTCATTTAATGTCTTCTTCCTCTTCCACC
TTTATCCGTTCCTCCCCAGAATCAATGCCAAAGAACAAACCTTTTGCCGC
AACCCCTACAATGTCACGGGCTTATGCCTTCGGTCCGCCTGCCCACTGGC
CAATAGTCGTTACGCCACCATCCGCGAAGAAGAAGGTCATTGCTATCTAT
TGCTCAAGACGGCCGAACGCGCCCACACCCCTGCCAAGCTGTGGGAGAAG
GTCCGCCTGCCTACCAACTACGCCAAGGCCCTGGAGAAAGTGTCGAAGGA
ATTGGAGTTTTTTCCCAAATACCTGCAGCATCGAAACAAGCAACGACTGA
CTAAGATCCACCAGTATTTGATTCGCATGCGCAAATTGAAATTAAAAGTC
AATAAGCCGAAGTTGGTCGGGATTCACAAGAAGGTCGAACGCCGTGAGAA
AAAGCGCGAAGCCAAGGCACTAGCAGCCGCCAAGCTGGACCAGAGCATCG
AGAAGGAGCTGTTGGAGCGGTTGAAGCAAGGGACGTATGGTGATATTTAC
AATTTTCCCGAGACGGCCTACAACAAGGTGTTGGACGAGGAGGGGGAAGA
TCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGAGCGGGTTGG
AGGAGGGGGAGGAGTATGTGGAGGGAGAGGATGAGGAGGATGAGAGCGAG
AGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAATTTGTCGAAGG
TGACTACGAGGAAGAGGAGGACATGGAGGATGGAGGGTCATACATGCTAG
AGGATGAAGGTGAGTTTGATGAGGAGGCAGCCATGGCCTCGATGCGCACG
GCGGCAGCAGGGGGAAGCAAGAAGAGAGGGAGGGGGGTTGGGATTGGAGG
AGAAGGTAAAACAGGTAAGGGCGGAACGGGAGTAGCCGTCAAAAAGCCGG
CGGCGAAGAAGGGAAAGAAGGTGGCGCATCCGCATGTGGAGGTGGAGTAC
GAGCATGAAGACGAGGAGGTGGAGGTGCAGGCGGGGGGAGGCTCGTGGTG
A
back to top
Synonyms
Publications