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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:930365..932402 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03210.1 vs.
Match: EWM27483.1 (Mak16 protein [Nannochloropsis gaditana]) HSP 1 Score: 381.7 bits (979), Expect = 2.900e-102 Identity = 232/304 (76.32%), Postives = 254/304 (83.55%), Query Frame = 0
Query: 87 FLPRINAKEQTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKVRLPTNYAKALEKVSKELEFFPKYLQHRNKQRLTKIHQYLIRMRKLKLKVNKPKLVGIHKKVERREKKREAKALAAAKLDQSIEKELLERLKQGTYGDIYNFPETAYNKVLDEEGEDQEEEEEEEEEEGGSGLEEGEEYVEGEDEEDESESEEEEEEEEEEREFVEGDYEEEEDMEDGGSYMLEDEGE-FDEEAAMASMRTAAAGGSKKRGRGVGIGGEGKTGKGGTGVAVKKPAAKKGK 390
F +INAKE TFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEK+RLP+NYAKALEKVS+ LE+FPKYLQHRNKQRLTKIHQYLIRMR+LKLK NKPKLVGIHKKV+RREKKREAKALAAAKL+Q+IEKELL RL+QGTYGDIYNFPET Y+KVLDEEGED+EEEEEEEEEE EEYVEGE+EE E EEEEEEEEREFV GD+EEEEDMEDG SY+LE+E E +DE A A +R A G KRGR GE K +G GVAV ++G+
Sbjct: 19 FKSKINAKEHTFCRNPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEKIRLPSNYAKALEKVSEALEYFPKYLQHRNKQRLTKIHQYLIRMRELKLKANKPKLVGIHKKVDRREKKREAKALAAAKLEQNIEKELLARLRQGTYGDIYNFPETTYHKVLDEEGEDEEEEEEEEEEEE-------EEYVEGEEEE-----ESEEEEEEEEREFVTGDFEEEEDMEDGASYLLEEEEEDYDEVKAKAVLRAEAKG--NKRGR-----GERKAERGRRGVAVTLRNRRRGR 303
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03210.1 ID=NO09G03210.1|Name=NO09G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp GGGGAGGGAGGGTACGCAAATGGAGAGATAAGGAAAGGCATGGGAGGCTT GCCGTCGTGAGTGTCGGTAGAATACTGGCATTGCAACTGCAGGGAGAGTT GTCCCAAAGGCATGGGTCAGGAAGTCGTCATTTTCCCACCGTCCTCAGTC CCACGCACGCAGCAAGCGATGAGACAGGATATGCGCAGCCCTGTGATGAA GAGGTGGGCAGTGGCAGAGAAGACAACATCGGGCTGGCACCAAGTGCCAA AATCCCTGCCAACATCTACCAACTCCACAATAACAAGACCATGGCGTGCG CCTCTGTGATGGGATGGCGGTGGCTTACAGGAAATTAAATACTACCATGG CAAGAAGAAGCTCGCTAGTGGCGGCCCACCACCACTTGCTCCAGATACGA ATTTGCCCATGTTTTAGTTCCTTTGCAGCGTAAATACCCCAGAAGTTCCA AGCTTCGGGACAAAGCAGCGTCAAAGATAATGAGGACGAGGATGTCCTCG TGCTTGGTTGGTCGCCGCAATTTTTGTTTGGTCTAGGATCAATCCTCACA ACGCGCTGACCGACCTCCCCATCCACAGACACCACCCACTCAACCAAGCA CTCTACGCAGTTAAATAAACAGCAGCAGCAGCCATGAGTGCCCCCGACGA GATCATCTGGCAGATAATCAACCATCAATTCTGCTCCTTCAAATCCAAGT ATGTGCAAAAATGGTCCCTGCAGGCTCTCTTCTCCCTCCCCCTCCCTTCT CCCTGCTCCCTCTCACCAACCTCACAGGCTCATGTATCATCATCATCAGG AATCATGTCCTGCTTCTCCCTGACCATGCACTATCCCACCAATTCTCTTC TTTTCTCATTTAATGTCTTCTTCCTCTTCCACCTTTATCCGTTCCTCCCC AGAATCAATGCCAAAGAACAAACCTTTTGCCGCAACCCCTACAATGTCAC GGGCTTATGCCTTCGGTCCGCCTGCCCACTGGCCAATAGTCGTTACGCCA CCATCCGCGAAGAAGAAGGTCATTGCTATCTATTGCTCAAGACGGCCGAA CGCGCCCACACCCCTGCCAAGCTGTGGGAGAAGGTCCGCCTGCCTACCAA CTACGCCAAGGCCCTGGAGAAAGTGTCGAAGGAATTGGAGTTTTTTCCCA AATACCTGCAGCATCGAAACAAGCAACGACTGACTAAGATCCACCAGTAT TTGATTCGCATGCGCAAATTGAAATTAAAAGTCAATAAGCCGAAGTTGGT CGGGATTCACAAGAAGGTCGAACGCCGTGAGAAAAAGCGCGAAGCCAAGG CACTAGCAGCCGCCAAGCTGGACCAGAGCATCGAGAAGGAGCTGTTGGAG CGGTTGAAGCAAGGGACGTATGGTGATATTTACAATTTTCCCGAGACGGC CTACAACAAGGTGTTGGACGAGGAGGGGGAAGATCAGGAGGAGGAGGAGG AGGAGGAGGAGGAGGAGGGGGGGAGCGGGTTGGAGGAGGGGGAGGAGTAT GTGGAGGGAGAGGATGAGGAGGATGAGAGCGAGAGCGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGAGGGAATTTGTCGAAGGTGACTACGAGGAAGAGG AGGACATGGAGGATGGAGGGTCATACATGCTAGAGGATGAAGGTGAGTTT GATGAGGAGGCAGCCATGGCCTCGATGCGCACGGCGGCAGCAGGGGGAAG CAAGAAGAGAGGGAGGGGGGTTGGGATTGGAGGAGAAGGTAAAACAGGTA AGGGCGGAACGGGAGTAGCCGTCAAAAAGCCGGCGGCGAAGAAGGGAAAG AAGGTGGCGCATCCGCATGTGGAGGTGGAGTACGAGCATGAAGACGAGGA GGTGGAGGTGCAGGCGGGGGGAGGCTCGTGGTGA back to topprotein sequence of NO09G03210.1 >NO09G03210.1-protein ID=NO09G03210.1-protein|Name=NO09G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp MSAPDEIIWQIINHQFCSFKSKYVQKWSLQALFSLPLPSPCSLSPTSQAH VSSSSGIMSCFSLTMHYPTNSLLFSFNVFFLFHLYPFLPRINAKEQTFCR NPYNVTGLCLRSACPLANSRYATIREEEGHCYLLLKTAERAHTPAKLWEK VRLPTNYAKALEKVSKELEFFPKYLQHRNKQRLTKIHQYLIRMRKLKLKV NKPKLVGIHKKVERREKKREAKALAAAKLDQSIEKELLERLKQGTYGDIY NFPETAYNKVLDEEGEDQEEEEEEEEEEGGSGLEEGEEYVEGEDEEDESE SEEEEEEEEEEREFVEGDYEEEEDMEDGGSYMLEDEGEFDEEAAMASMRT AAAGGSKKRGRGVGIGGEGKTGKGGTGVAVKKPAAKKGKKVAHPHVEVEY EHEDEEVEVQAGGGSW* back to topmRNA from alignment at chr9:930365..932402+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03210.1 ID=NO09G03210.1|Name=NO09G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2038bp|location=Sequence derived from alignment at chr9:930365..932402+ (Nannochloropsis oceanica) GGGGAGGGAGGGTACGCAAATGGAGAGATAAGGAAAGGCATGGGAGGCTT
GCCGTCGTGAGTGTCGGTAGAATACTGGCATTGCAACTGCAGGGAGAGTT
GTCCCAAAGGCATGGGTCAGGAAGTCGTCATTTTCCCACCGTCCTCAGTC
CCACGCACGCAGCAAGCGATGAGACAGGATATGCGCAGCCCTGTGATGAA
GAGGTGGGCAGTGGCAGAGAAGACAACATCGGGCTGGCACCAAGTGCCAA
AATCCCTGCCAACATCTACCAACTCCACAATAACAAGACCATGGCGTGCG
CCTCTGTGATGGGATGGCGGTGGCTTACAGGAAATTAAATACTACCATGG
CAAGAAGAAGCTCGCTAGTGGCGGCCCACCACCACTTGCTCCAGATACGA
ATTTGCCCATGTTTTAGTTCCTTTGCAGCGTAAATACCCCAGAAGTTCCA
AGCTTCGGGACAAAGCAGCGTCAAAGATAATGAGGACGAGGATGTCCTCG
TGCTTGGTTGGTCGCCGCAATTTTTGTTTGGTCTAGGATCAATCCTCACA
ACGCGCTGACCGACCTCCCCATCCACAGACACCACCCACTCAACCAAGCA
CTCTACGCAGTTAAATAAACAGCAGCAGCAGCCATGAGTGCCCCCGACGA
GATCATCTGGCAGATAATCAACCATCAATTCTGCTCCTTCAAATCCAAGT
ATGTGCAAAAATGGTCCCTGCAGGCTCTCTTCTCCCTCCCCCTCCCTTCT
CCCTGCTCCCTCTCACCAACCTCACAGGCTCATGTATCATCATCATCAGG
AATCATGTCCTGCTTCTCCCTGACCATGCACTATCCCACCAATTCTCTTC
TTTTCTCATTTAATGTCTTCTTCCTCTTCCACCTTTATCCGTTCCTCCCC
AGAATCAATGCCAAAGAACAAACCTTTTGCCGCAACCCCTACAATGTCAC
GGGCTTATGCCTTCGGTCCGCCTGCCCACTGGCCAATAGTCGTTACGCCA
CCATCCGCGAAGAAGAAGGTCATTGCTATCTATTGCTCAAGACGGCCGAA
CGCGCCCACACCCCTGCCAAGCTGTGGGAGAAGGTCCGCCTGCCTACCAA
CTACGCCAAGGCCCTGGAGAAAGTGTCGAAGGAATTGGAGTTTTTTCCCA
AATACCTGCAGCATCGAAACAAGCAACGACTGACTAAGATCCACCAGTAT
TTGATTCGCATGCGCAAATTGAAATTAAAAGTCAATAAGCCGAAGTTGGT
CGGGATTCACAAGAAGGTACTAGAAGTCCTCCCTCCACCCCTTCCTCCCT
CCCTCCCCTCTATTTTCCTTCCTGATATTATGGATGCTGTAGGGCTAGAT
CTCCCACCCCTTTTTTAACCCTCTTTTCTCACCACTTTTCCCCTCCTTCC
CTCTGTTTTTGTTTTCCCAGGTCGAACGCCGTGAGAAAAAGCGCGAAGCC
AAGGCACTAGCAGCCGCCAAGCTGGACCAGAGCATCGAGAAGGAGCTGTT
GGAGCGGTTGAAGCAAGGGACGTATGGTGATATTTACAATTTTCCCGAGA
CGGCCTACAACAAGGTGTTGGACGAGGAGGGGGAAGATCAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGGGGGAGCGGGTTGGAGGAGGGGGAGGA
GTATGTGGAGGGAGAGGATGAGGAGGATGAGAGCGAGAGCGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGAGGGAATTTGTCGAAGGTGACTACGAGGAA
GAGGAGGACATGGAGGATGGAGGGTCATACATGCTAGAGGATGAAGGTGA
GTTTGATGAGGAGGCAGCCATGGCCTCGATGCGCACGGCGGCAGCAGGGG
GAAGCAAGAAGAGAGGGAGGGGGGTTGGGATTGGAGGAGAAGGTAAAACA
GGTAAGGGCGGAACGGGAGTAGCCGTCAAAAAGCCGGCGGCGAAGAAGGG
AAAGAAGGTGGCGCATCCGCATGTGGAGGTGGAGTACGAGCATGAAGACG
AGGAGGTGGAGGTGCAGGCGGGGGGAGGCTCGTGGTGA back to topCoding sequence (CDS) from alignment at chr9:930365..932402+ >NO09G03210.1 ID=NO09G03210.1|Name=NO09G03210.1|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at chr9:930365..932402+ (Nannochloropsis oceanica) ATGAGTGCCCCCGACGAGATCATCTGGCAGATAATCAACCATCAATTCTG CTCCTTCAAATCCAAGTATGTGCAAAAATGGTCCCTGCAGGCTCTCTTCT CCCTCCCCCTCCCTTCTCCCTGCTCCCTCTCACCAACCTCACAGGCTCAT GTATCATCATCATCAGGAATCATGTCCTGCTTCTCCCTGACCATGCACTA TCCCACCAATTCTCTTCTTTTCTCATTTAATGTCTTCTTCCTCTTCCACC TTTATCCGTTCCTCCCCAGAATCAATGCCAAAGAACAAACCTTTTGCCGC AACCCCTACAATGTCACGGGCTTATGCCTTCGGTCCGCCTGCCCACTGGC CAATAGTCGTTACGCCACCATCCGCGAAGAAGAAGGTCATTGCTATCTAT TGCTCAAGACGGCCGAACGCGCCCACACCCCTGCCAAGCTGTGGGAGAAG GTCCGCCTGCCTACCAACTACGCCAAGGCCCTGGAGAAAGTGTCGAAGGA ATTGGAGTTTTTTCCCAAATACCTGCAGCATCGAAACAAGCAACGACTGA CTAAGATCCACCAGTATTTGATTCGCATGCGCAAATTGAAATTAAAAGTC AATAAGCCGAAGTTGGTCGGGATTCACAAGAAGGTCGAACGCCGTGAGAA AAAGCGCGAAGCCAAGGCACTAGCAGCCGCCAAGCTGGACCAGAGCATCG AGAAGGAGCTGTTGGAGCGGTTGAAGCAAGGGACGTATGGTGATATTTAC AATTTTCCCGAGACGGCCTACAACAAGGTGTTGGACGAGGAGGGGGAAGA TCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGAGCGGGTTGG AGGAGGGGGAGGAGTATGTGGAGGGAGAGGATGAGGAGGATGAGAGCGAG AGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGAATTTGTCGAAGG TGACTACGAGGAAGAGGAGGACATGGAGGATGGAGGGTCATACATGCTAG AGGATGAAGGTGAGTTTGATGAGGAGGCAGCCATGGCCTCGATGCGCACG GCGGCAGCAGGGGGAAGCAAGAAGAGAGGGAGGGGGGTTGGGATTGGAGG AGAAGGTAAAACAGGTAAGGGCGGAACGGGAGTAGCCGTCAAAAAGCCGG CGGCGAAGAAGGGAAAGAAGGTGGCGCATCCGCATGTGGAGGTGGAGTAC GAGCATGAAGACGAGGAGGTGGAGGTGCAGGCGGGGGGAGGCTCGTGGTG A back to top
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