NO09G03170.1, NO09G03170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03170.1
Unique NameNO09G03170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2929
Alignment locationchr9:921918..925002 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:921918..925002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G03170.1 vs.
Match: EWM27487.1 (malate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 572.0 bits (1473), Expect = 1.400e-159
Identity = 296/343 (86.30%), Postives = 320/343 (93.29%), Query Frame = 0 
Query:   64 MLAARTALRPVTMAAA----RSFSSTKSTAAKVAVVGASGGIGQPLSMLLKLDPSIKELNLYDIVHTPGVAADLSHIPFPAKVKGFKGAESVEAALKGCDVIVVPAGVPRKPGMTRDDLFNINAGIVKTIAEAAAKVAPNACYLIISNPVNSTVPIFAEVLKKAGTYNPKKLFGVTTLDVIRANTFVSENQCTDPTSTNVTVVGGHAGTTILPLLSQVKGAKFSPEALAALTHRIQFGGDEVVKAKDGAGSATLSMAYAGYLFTAQLLKALKGEKGVVACTFVENTVTAAPFFAVPVTLGKGGVEKIHSLGELSAVEKEAMDKAIPDLVAQAKKGVEFVKNAK 403
            M AAR++LRP  M A     RS SSTK+TAA+VAVVGASGGIGQPLSMLLKLDPSIKELNLYDIVHTPGVAADLSHIPFPAKV G+KGA+S+ AAL+GCDVIVVPAGVPRKPGMTRDDLFNINAGIVKTIAEA+AKVAP ACYLIISNPVNSTVPIFAEVLKKAGTYNPKKLFGVTTLDVIRANTFV+ENQ TD   TNVTVVGGHAGTTILPLLSQVKGA F+P+ALAALTHRIQFGGDEVVKAKDGAGSATLSMAYAGYLFTA+LL+ALKGEK VVAC FVENT+TAAPFFA PVTLGK GVEK+H+LG LSA+E+EA++KA+PDL+AQAKKGVEFV+NAK
Sbjct:    1 MFAARSSLRPAAMGAVACAVRSISSTKATAARVAVVGASGGIGQPLSMLLKLDPSIKELNLYDIVHTPGVAADLSHIPFPAKVTGYKGADSIHAALEGCDVIVVPAGVPRKPGMTRDDLFNINAGIVKTIAEASAKVAPKACYLIISNPVNSTVPIFAEVLKKAGTYNPKKLFGVTTLDVIRANTFVAENQGTDVLQTNVTVVGGHAGTTILPLLSQVKGASFTPDALAALTHRIQFGGDEVVKAKDGAGSATLSMAYAGYLFTAKLLQALKGEKDVVACAFVENTLTAAPFFAAPVTLGKEGVEKVHALGSLSAMEQEALEKALPDLLAQAKKGVEFVQNAK 343
The following BLAST results are available for this feature:
BLAST of NO09G03170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27487.11.400e-15986.30malate dehydrogenase [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03170NO09G03170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03170.1NO09G03170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03170.1.cds1NO09G03170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03170.1.cds2NO09G03170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03170.1 ID=NO09G03170.1|Name=NO09G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2929bp
GGAACGCCACCCTCTAGTTGCCATCAATCCCCTGAAACTTTTTTCTTTCC
ATTTTCCCTTTCTGTCCCTTTGATTTAATACATCCCCACTTTAGGCATTT
CCCCCTCCCTCCCTTCCTACCTCCTTCCCTCCAATCTTCGTGACTTCACG
CGCCTCCCTTCCACGGGACTCCGTACGTCTCCTCACACACCACCTCGTCC
ATATCAAACCTCAATGATGCCGGGGGCTGCTTCGATGACACTGCATGCCC
CTCCTTCCCTTCCTGTGCCGCTTCCTCGGCAGGCGTGGCGGCATAGCCCA
CACAAACCACCACCGGCACTATGTACCGGGAAGGCACCTTCAACAACCTC
CTCAACCGCCGGGCATCAAACCCCTCCATGGGGCACGTCGTCAGTCCATG
CGATGATGCAGCCAACATAAAGGTCATGGCGGCAAGCATCGTATTCTTCG
CTGCCCAGGTCTCCGGTCGCTCGAAGCGTGGCACTGGTTTGAATGTCCCC
ACCACGTTCATAAACATTCTCTTTCCCCAGTACAAACACCATCGAACCAA
AGAAAATCGATACCCCGTCGAGAAAAGGGTCGCGAAAAAAGAAATTTGCT
TGAGAAAGCCTTCTGGGAAAGTGCCTGTTCGACGAAAGAGCTCTACGACA
CGCGGCATGAGCCGCCCACTTTCCAAGTCGGCGGCAAAGATAACAGTGAC
AGGGGCGTTACGCACCCGGTCACCGTTGGCGCCGAGCATGGCATGCGTGG
CCACCTTGTCGCGAAGGGCGGGGTCTTGCAGGACGATGAGTTTGAACGGC
TGGGTATTGAAGGAGGAAGGAGAGCGTTGTGTCAGGCGGAGGAGGTCGTT
GAGGATGGTTCTTGACACGGACTTATGCGCGTAGTGAGAGTTGGAGTAAC
GGTTCCGCACGACGTCGGAAAAGGGTGCGGCCAGAATGGAAGGTGGCGGT
TGATTCCCTCCCAAACTAGCCGCCGCAGCAGCAGCAGCGTCGAGAACCAC
AGGTGAAGGAGGATTGGAGGGGGAGGAGGCTCGTGATGATAATGCTGGGG
GTGATGGTGACCGCAGGACAAAACCCTCGGCCGTCGCAGGCAGCAGGGTC
AGGAGAAGGAATGGCAAAATGAGGAGGCGCATCATCTAGCGTAGTAATAG
CTGGACAGTCGCCTGTGGTGTGAGGTGTGAGGATTAGATGATCGAAGGGA
GGGGAGAAGCGATGGGGGAGGGATTTGTTCTTTTCGATGACGGAGGCTTG
GCTGCCGCGACGAGAGAAGCAGGGAGAGATGACACGAAACTCCCCCGCAC
ACGCGCATTACATGTTGCGCCCTTGTCCACATAATAATGGAACACAGCAC
AGCATGGCAGCAGTCTCCTCTTCAAGTCGCTTTATCGCCCCAAGCGATGA
GGGAGGCACCTAAAACCCATCTGCCTTCTTGATTCGATTCTACTGATGGC
GCAAGCATGCAATGACGACGACAACCACACGTTCTGGACGCTGTCGCCTC
CAACCCATATATTGCCACGCTTTTCTTATCAATCGTACAACCTTTCTGCT
GTGCGCCTACCGCGTGCGCCCGCCACTCCTTTCCCTCGTCGCTCACATGT
ATTTCCCCGCTTCCCCGTCCCAGGCCACAGACCACTGCCACAAACCAAAC
ATGCTTGCTGCTCGTACGGCTCTGCGTCCCGTTACTATGGCCGCTGCCCG
CTCCTTCTCCTCCACCAAGTCTACGGCCGCCAAGGTTGCTGTGGTGGGTG
CGTCGGGAGGCATTGGGCAGCCCTTATCCATGCTCCTAAAGCTGGACCCC
AGCATCAAGGAGCTCAACTTGTACGATATTGTGCACACCCCCGGTGTGGC
CGCGGATTTGTCCCACATCCCCTTCCCTGCGAAAGTCAAGGGATTCAAAG
GTGCGGAATCCGTCGAAGCCGCGCTGAAGGGATGCGATGTGATTGTTGTC
CCGGCCGGCGTGCCGCGAAAGCCTGGTATGACCCGTGACGACCTCTTCAA
CATCAATGCCGGCATTGTGAAAACAATTGCTGAGGCCGCCGCCAAGGTGG
CGCCCAATGCCTGCTATTTGATCATCTCTAACCCGGTCAATTCCACAGTG
CCCATCTTTGCGGAGGTGCTCAAGAAGGCGGGGACCTACAACCCCAAGAA
ACTCTTCGGAGTCACCACGCTGGACGTCATCCGCGCCAACACCTTCGTGT
CCGAGAATCAATGCACGGATCCTACCTCCACCAACGTGACTGTCGTGGGC
GGTCACGCCGGGACGACCATCCTTCCCCTCTTGTCTCAAGTGAAGGGAGC
CAAGTTCTCCCCCGAGGCCCTGGCGGCACTGACCCACCGCATTCAGTTCG
GAGGGGACGAGGTGGTTAAGGCTAAGGATGGCGCCGGATCCGCGACCCTA
AGCATGGCATATGCTGGCTATTTGTTCACGGCCCAGTTGCTCAAGGCCCT
CAAGGGCGAGAAGGGTGTGGTGGCGTGCACTTTCGTGGAGAACACCGTGA
CGGCCGCGCCCTTTTTCGCCGTGCCTGTGACGTTGGGGAAGGGGGGGGTG
GAGAAAATCCATAGTTTGGGTGAGCTCTCGGCCGTGGAGAAGGAGGCCAT
GGACAAGGCGATTCCTGATTTGGTCGCGCAGGCCAAGAAGGGGGTGGAGT
TCGTGAAGAACGCTAAATAGAGGGGAGGGAGGGAGAGAAGGAGGAAGGGA
GGGAGGGAGAAAAGGAGGGACAGTTTTGATTATGCGAGTTGTTAAGTAGA
GAAATATGTATCCTAGGCTCAGCGGAGAGAGACGGAAAGGGAGAGGAGAA
AACGGGCAAGAGAGCAAGGGAATGTAGTAGCACACAAGAGAGGGAAGGAG
GGAGGGAGGTAGGGAGGGAGGGAGTAGTCTCTCACAACAAACTAGAAAAT
AAGAAGTGAAGCATAGGAAGGAAACGAGT
back to top

protein sequence of NO09G03170.1

>NO09G03170.1-protein ID=NO09G03170.1-protein|Name=NO09G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MTTTTTRSGRCRLQPIYCHAFLINRTTFLLCAYRVRPPLLSLVAHMYFPA
SPSQATDHCHKPNMLAARTALRPVTMAAARSFSSTKSTAAKVAVVGASGG
IGQPLSMLLKLDPSIKELNLYDIVHTPGVAADLSHIPFPAKVKGFKGAES
VEAALKGCDVIVVPAGVPRKPGMTRDDLFNINAGIVKTIAEAAAKVAPNA
CYLIISNPVNSTVPIFAEVLKKAGTYNPKKLFGVTTLDVIRANTFVSENQ
CTDPTSTNVTVVGGHAGTTILPLLSQVKGAKFSPEALAALTHRIQFGGDE
VVKAKDGAGSATLSMAYAGYLFTAQLLKALKGEKGVVACTFVENTVTAAP
FFAVPVTLGKGGVEKIHSLGELSAVEKEAMDKAIPDLVAQAKKGVEFVKN
AK*
back to top

mRNA from alignment at chr9:921918..925002+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03170.1 ID=NO09G03170.1|Name=NO09G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=3085bp|location=Sequence derived from alignment at chr9:921918..925002+ (Nannochloropsis oceanica)
GGAACGCCACCCTCTAGTTGCCATCAATCCCCTGAAACTTTTTTCTTTCC
ATTTTCCCTTTCTGTCCCTTTGATTTAATACATCCCCACTTTAGGCATTT
CCCCCTCCCTCCCTTCCTACCTCCTTCCCTCCAATCTTCGTGACTTCACG
CGCCTCCCTTCCACGGGACTCCGTACGTCTCCTCACACACCACCTCGTCC
ATATCAAACCTCAATGATGCCGGGGGCTGCTTCGATGACACTGCATGCCC
CTCCTTCCCTTCCTGTGCCGCTTCCTCGGCAGGCGTGGCGGCATAGCCCA
CACAAACCACCACCGGCACTATGTACCGGGAAGGCACCTTCAACAACCTC
CTCAACCGCCGGGCATCAAACCCCTCCATGGGGCACGTCGTCAGTCCATG
CGATGATGCAGCCAACATAAAGGTCATGGCGGCAAGCATCGTATTCTTCG
CTGCCCAGGTCTCCGGTCGCTCGAAGCGTGGCACTGGTTTGAATGTCCCC
ACCACGTTCATAAACATTCTCTTTCCCCAGTACAAACACCATCGAACCAA
AGAAAATCGATACCCCGTCGAGAAAAGGGTCGCGAAAAAAGAAATTTGCT
TGAGAAAGCCTTCTGGGAAAGTGCCTGTTCGACGAAAGAGCTCTACGACA
CGCGGCATGAGCCGCCCACTTTCCAAGTCGGCGGCAAAGATAACAGTGAC
AGGGGCGTTACGCACCCGGTCACCGTTGGCGCCGAGCATGGCATGCGTGG
CCACCTTGTCGCGAAGGGCGGGGTCTTGCAGGACGATGAGTTTGAACGGC
TGGGTATTGAAGGAGGAAGGAGAGCGTTGTGTCAGGCGGAGGAGGTCGTT
GAGGATGGTTCTTGACACGGACTTATGCGCGTAGTGAGAGTTGGAGTAAC
GGTTCCGCACGACGTCGGAAAAGGGTGCGGCCAGAATGGAAGGTGGCGGT
TGATTCCCTCCCAAACTAGCCGCCGCAGCAGCAGCAGCGTCGAGAACCAC
AGGTGAAGGAGGATTGGAGGGGGAGGAGGCTCGTGATGATAATGCTGGGG
GTGATGGTGACCGCAGGACAAAACCCTCGGCCGTCGCAGGCAGCAGGGTC
AGGAGAAGGAATGGCAAAATGAGGAGGCGCATCATCTAGCGTAGTAATAG
CTGGACAGTCGCCTGTGGTGTGAGGTGTGAGGATTAGATGATCGAAGGGA
GGGGAGAAGCGATGGGGGAGGGATTTGTTCTTTTCGATGACGGAGGCTTG
GCTGCCGCGACGAGAGAAGCAGGGAGAGATGACACGAAACTCCCCCGCAC
ACGCGCATTACATGTTGCGCCCTTGTCCACATAATAATGGAACACAGCAC
AGCATGGCAGCAGTCTCCTCTTCAAGTCGCTTTATCGCCCCAAGCGATGA
GGGAGGCACCTAAAACCCATCTGCCTTCTTGATTCGATTCTACTGATGGC
GCAAGCATGCAATGACGACGACAACCACACGTTCTGGACGCTGTCGCCTC
CAACCCATATATTGCCACGCTTTTCTTATCAATCGTACAACCTTTCTGCT
GTGCGCCTACCGCGTGCGCCCGCCACTCCTTTCCCTCGTCGCTCACATGT
ATTTCCCCGCTTCCCCGTCCCAGGCCACAGACCACTGCCACAAACCAAAC
ATGCTTGCTGCTCGTACGGCTCTGCGTCCCGTTACTATGGCCGCTGCCCG
CTCCTTCTCCTCCACCAAGTCTACGGCCGCCAAGGTTGCTGTGGTGGGTG
CGTCGGGAGGCATTGGGCAGCCCTTATCCATGCTCCTAAAGCTGGACCCC
AGCATCAAGGAGCTCAACTTGTACGATATTGTGCACACCCCCGGTGTGGC
CGCGGATTTGTCCCACATCCCCTTCCCTGCGAAAGTCAAGGGATTCAAAG
GTGCGGAATCCGTCGAAGCCGCGCTGAAGGGATGCGATGTGATTGTTGTC
CCGGCCGGCGTGCCGCGAAAGCCTGGTATGACCCGTGACGACCTCTTCAA
CATCAATGCCGGCATTGTGAAAACAATTGCTGAGGCCGCCGCCAAGGTGG
CGCCCAATGCCTGCTATTTGATCATCTCTAACCCGGTCAATTCCACAGTG
CCCATCTTTGCGGAGGTGCTCAAGAAGGTGGGTATAGGTGGGAGTCAATC
ATGGCTGCAGGCATCCTTGCTCCCTCCCTTCCTGACACTTCTCACTCCTT
CCTGATGCAATCCATCTTGTCATGTGTTACATTCACCTCCTTTCTTTCTC
TTCTACCTCCTTTCTTCCTTTCCTCCGTGCCAGGCGGGGACCTACAACCC
CAAGAAACTCTTCGGAGTCACCACGCTGGACGTCATCCGCGCCAACACCT
TCGTGTCCGAGAATCAATGCACGGATCCTACCTCCACCAACGTGACTGTC
GTGGGCGGTCACGCCGGGACGACCATCCTTCCCCTCTTGTCTCAAGTGAA
GGGAGCCAAGTTCTCCCCCGAGGCCCTGGCGGCACTGACCCACCGCATTC
AGTTCGGAGGGGACGAGGTGGTTAAGGCTAAGGATGGCGCCGGATCCGCG
ACCCTAAGCATGGCATATGCTGGCTATTTGTTCACGGCCCAGTTGCTCAA
GGCCCTCAAGGGCGAGAAGGGTGTGGTGGCGTGCACTTTCGTGGAGAACA
CCGTGACGGCCGCGCCCTTTTTCGCCGTGCCTGTGACGTTGGGGAAGGGG
GGGGTGGAGAAAATCCATAGTTTGGGTGAGCTCTCGGCCGTGGAGAAGGA
GGCCATGGACAAGGCGATTCCTGATTTGGTCGCGCAGGCCAAGAAGGGGG
TGGAGTTCGTGAAGAACGCTAAATAGAGGGGAGGGAGGGAGAGAAGGAGG
AAGGGAGGGAGGGAGAAAAGGAGGGACAGTTTTGATTATGCGAGTTGTTA
AGTAGAGAAATATGTATCCTAGGCTCAGCGGAGAGAGACGGAAAGGGAGA
GGAGAAAACGGGCAAGAGAGCAAGGGAATGTAGTAGCACACAAGAGAGGG
AAGGAGGGAGGGAGGTAGGGAGGGAGGGAGTAGTCTCTCACAACAAACTA
GAAAATAAGAAGTGAAGCATAGGAAGGAAACGAGT
back to top

Coding sequence (CDS) from alignment at chr9:921918..925002+

>NO09G03170.1 ID=NO09G03170.1|Name=NO09G03170.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr9:921918..925002+ (Nannochloropsis oceanica)
ATGACGACGACAACCACACGTTCTGGACGCTGTCGCCTCCAACCCATATA
TTGCCACGCTTTTCTTATCAATCGTACAACCTTTCTGCTGTGCGCCTACC
GCGTGCGCCCGCCACTCCTTTCCCTCGTCGCTCACATGTATTTCCCCGCT
TCCCCGTCCCAGGCCACAGACCACTGCCACAAACCAAACATGCTTGCTGC
TCGTACGGCTCTGCGTCCCGTTACTATGGCCGCTGCCCGCTCCTTCTCCT
CCACCAAGTCTACGGCCGCCAAGGTTGCTGTGGTGGGTGCGTCGGGAGGC
ATTGGGCAGCCCTTATCCATGCTCCTAAAGCTGGACCCCAGCATCAAGGA
GCTCAACTTGTACGATATTGTGCACACCCCCGGTGTGGCCGCGGATTTGT
CCCACATCCCCTTCCCTGCGAAAGTCAAGGGATTCAAAGGTGCGGAATCC
GTCGAAGCCGCGCTGAAGGGATGCGATGTGATTGTTGTCCCGGCCGGCGT
GCCGCGAAAGCCTGGTATGACCCGTGACGACCTCTTCAACATCAATGCCG
GCATTGTGAAAACAATTGCTGAGGCCGCCGCCAAGGTGGCGCCCAATGCC
TGCTATTTGATCATCTCTAACCCGGTCAATTCCACAGTGCCCATCTTTGC
GGAGGTGCTCAAGAAGGCGGGGACCTACAACCCCAAGAAACTCTTCGGAG
TCACCACGCTGGACGTCATCCGCGCCAACACCTTCGTGTCCGAGAATCAA
TGCACGGATCCTACCTCCACCAACGTGACTGTCGTGGGCGGTCACGCCGG
GACGACCATCCTTCCCCTCTTGTCTCAAGTGAAGGGAGCCAAGTTCTCCC
CCGAGGCCCTGGCGGCACTGACCCACCGCATTCAGTTCGGAGGGGACGAG
GTGGTTAAGGCTAAGGATGGCGCCGGATCCGCGACCCTAAGCATGGCATA
TGCTGGCTATTTGTTCACGGCCCAGTTGCTCAAGGCCCTCAAGGGCGAGA
AGGGTGTGGTGGCGTGCACTTTCGTGGAGAACACCGTGACGGCCGCGCCC
TTTTTCGCCGTGCCTGTGACGTTGGGGAAGGGGGGGGTGGAGAAAATCCA
TAGTTTGGGTGAGCTCTCGGCCGTGGAGAAGGAGGCCATGGACAAGGCGA
TTCCTGATTTGGTCGCGCAGGCCAAGAAGGGGGTGGAGTTCGTGAAGAAC
GCTAAATAG
back to top
Synonyms
Publications