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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:917784..921917 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03160.1 vs.
Match: EWM27488.1 (hypothetical protein Naga_100099g23 [Nannochloropsis gaditana]) HSP 1 Score: 548.1 bits (1411), Expect = 2.600e-152 Identity = 275/328 (83.84%), Postives = 297/328 (90.55%), Query Frame = 0
Query: 41 MSAKTAFCLAFMALPTASAFLFPASHPIST-QVGQRV---QPTCGMRVAPETRRGAAVAASAATQAKADTERELTLADVKGSNSDPVWSEVPEELYFIANYAAALGGEYPPENVDKSYWEQIKPATYTKLAALAKTADPTTISSGQYLMLMEAIVRDAIAADPKMTRPSMEEPTLTEQQEYIYNWIQTVPNSEFLKFKEEYKLEDMSPADWWSKIDEIAKDNAAKGVNLPEMTLDLTKDDFLGVAREEFVKSIKQFLKVESELYPVFIISKPGCEEGAKLVNAFNKTMDIPVRTYEVFGFDAFNFKVKADYDWGEARLEAIEELTGSK 365
MSA+TAFCLA +ALP+ASAFLFP+S P+S+ G + CG RVAPETRRGA VAASAATQAKADT RELTLADVKGSN+D VW+EVPEELYFIANYAAALGGEYPPENVDKSYW+QIKPATYTKLAALAKTADP+TIS GQYLMLMEAIVRDAIA DP + RP+MEEP+LTEQQEYIYNWIQ VPN EFLKFKEE K+E+MSPA+WW KIDE+AK+NAAKG+ LPEMTLDLT DDFLGVAREEFVKSIKQFLKVESELYPVFIISKPGC EGAK+V FNKTMDIPVRTYEVFGFDAF FKVKADYDWGEARLEAIEELTGS+
Sbjct: 1 MSARTAFCLAIVALPSASAFLFPSSSPLSSLTTGPPTLSGKSACGFRVAPETRRGATVAASAATQAKADTGRELTLADVKGSNTDAVWAEVPEELYFIANYAAALGGEYPPENVDKSYWDQIKPATYTKLAALAKTADPSTISQGQYLMLMEAIVRDAIAKDPSLARPTMEEPSLTEQQEYIYNWIQNVPNDEFLKFKEENKMENMSPAEWWGKIDEVAKENAAKGIKLPEMTLDLTTDDFLGVAREEFVKSIKQFLKVESELYPVFIISKPGCAEGAKMVELFNKTMDIPVRTYEVFGFDAFKFKVKADYDWGEARLEAIEELTGSQ 328
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03160.1 ID=NO09G03160.1|Name=NO09G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2652bp CGCTGTCGTCGCCGTAAGCCAGAGAGCTTGACCCTTGCCCCAGATACCAT TTCTTTATCCCCGTTTTTCTCCTCTTTGCCTTTCCCTGCATGCATGGTTT TGCGACTCAGCATCTTTACGATGTCGGCATCTGGGTGGTCGCGAGGAAGA GGCAGGCACTGGACGGGTGAGCCTTGCTCTACACTTCCTCTCCTGGTCGC CTTTTGCCTCCAAGGGTTGTCATAAGTGCAAGCCGACCTTTGCTGGGGAC TTCATGGTCTTGGGATGGCCTTGGCAAGCATCGGCCACGTTCACAATCCT TTACTTTCCCTCACGCTGCACGGCGTATCCAATCAGGGAGAATGACCTAC ATGATGGTCCGCATTGCGACACCTCAAGATACACGGCAATCCCTCCTCTT TCCCATGCGCGTGGGTGGGTTGGGTCGGGTCGCTTGGCTAGGGTTGAAAG GTCAACCAGCGGTCAGGACACGGGACGCATCGACCACCGCGGTGGCTGGA TACTGAGAGGCATGTTTGCTGCTGCTACGCAGGTGCCTTCGCAAGCCTTG GGCCGGACTTTGAAACCCGCCGGCGTGCAGTGTCCAAGGCATGCTGCATC TGGACAATCGATCCGATACCGCCTTTCAGGCTTTATGGCGCTCACATTTA TTCCTACCCCACTGCGTACATCACACCACACAGACTATAGCCTCGTTGTT CAGATCGACCATGTCAGCGAAGACGGCCTTCTGCCTCGCCTTCATGGCCC TCCCCACTGCCTCCGCCTTCCTCTTCCCCGCCTCCCACCCCATCTCCACC CAAGTCGGCCAACGCGTTCAACCCACCTGTGGCATGCGCGTTGCCCCCGA GACCCGACGAGGCGCCGCTGTCGCTGCTTCGGCCGCCACCCAAGCCAAGG CCGACACGGAGCGGGAGCTTACTTTGGCTGATGTCAAGGGCAGCAACTCG GACCCTGTCTGGAGCGAGGTACCGGAGGAGCTCTACTTTATTGCCAACTA CGCCGCGGCCCTCGGTGGGGAATACCCCCCCGAAAACGTGGACAAGTCGT ACTGGGAACAGATCAAGCCGGCGACCTACACTAAGCTGGCTGCCCTTGCC AAGACGGCGGACCCGACCACCATCTCCTCCGGGCAGTACTTGATGCTGAT GGAGGCGATCGTGCGTGATGCCATCGCGGCGGACCCCAAGATGACCCGTC CCTCCATGGAAGAGCCCACCTTGACGGAGCAGCAGGAGTACATCTACAAT TGGATCCAGACCGTCCCCAATTCCGAGTTCCTGAAGTTCAAGGAGGAGTA CAAGTTGGAGGACATGAGTCCTGCCGATTGGTGGTCTAAGATCGACGAAA TCGCCAAGGACAACGCCGCGAAGGGCGTTAACCTCCCCGAGATGACTTTG GACCTAACCAAGGACGACTTTTTGGGTGTGGCCCGCGAGGAATTCGTGAA GTCCATTAAGCAGTTCCTCAAGGTGGAGTCCGAGCTCTACCCTGTATTTA TCATCTCCAAGCCCGGCTGTGAGGAGGGTGCCAAGCTAGTGAACGCCTTC AACAAGACCATGGACATCCCTGTGCGCACGTACGAGGTATTTGGTTTCGA TGCCTTCAACTTCAAGGTCAAGGCTGACTACGATTGGGGCGAGGCACGGC TGGAGGCGATTGAGGAGCTGACCGGCAGCAAGGAGTTGCCGTTGGTGTAC GTGGGTGGTAAGCTGATCGGCGGCGCCGAGAAAGTTAATGCTCAAATTGC AGACGGCAGCCTGAAGAAGACTGTGGCGACCTTGCGACAGGCCATCGTGG ACATGGTGGAGGCTCGCTTTCCCAAGCAAGAGGAGGAGAGCATGTATATT GGCATGCGTAAGGTGACAGCAGCGGAATATAAGGCCTATGAGGCGTTTCA GGCCAAGACAGGCGGATTGGACCCCTTGGAGGTGAACCGGAAGAAGGCCA AGGAGGCGGCGCAGAATAAGTAGGGGCTTGGGTTAGTTCTGGTTGGGAGG AGGGGGAAAAGAGGGAAGGAGGGAGAAGGGAGTGTAGGGCGGGACAGTGG TGATGGGGGAGGGAGTATGTGTGCGTGTTTTTTATAAACGCCTAAGTGTC TCGTGGTACATTTTAAAGGAGGGAAGGAAGGTAGATTGATTGGGAGGGAC GGATAAAAGCGCCTGAGCGCTGTGTCGTTTGAGATAAGATGGGATGGCGA AAGACAAAAGAAGAGAAAGACGAAGAGAAGGAGGGAAAAGAGCTACCCGG TGGAGAAGGGTCGACGCTTTATTAGGGTTATGTCTCTTTCTTTCATGTTT TCACCTCCTCATGCGCCTGTCTATGTGCATGTGTGTCTGTGTTGTGCGTG CGTGCACTCCTACGTGTGCGATGTGCCTACGTGTGGGGGGGGTTCGTGTG CACGGGGGTAGTGTGTAGGTGTACTACTACTGCTACTGCTATTCGCTTAT GATATCGGTGCGAGGGCTCAACTCACATTTCTGTGTGACCACCAAACCCA ACCATCCCCCCCTTTCCTCCTTCCCTTGTTCCTCCTCACTGTTCTCTCTC CCTTGGACACAGAAGTAGATGTGCCCAGGCAGGGGTGGCAGTAGCAGCAG CAGCAGCAGCAGCGACGAAGAGATAAGGAAATAAAAACCAGGAGGGAAAA CA back to topprotein sequence of NO09G03160.1 >NO09G03160.1-protein ID=NO09G03160.1-protein|Name=NO09G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp MLHLDNRSDTAFQALWRSHLFLPHCVHHTTQTIASLFRSTMSAKTAFCLA FMALPTASAFLFPASHPISTQVGQRVQPTCGMRVAPETRRGAAVAASAAT QAKADTERELTLADVKGSNSDPVWSEVPEELYFIANYAAALGGEYPPENV DKSYWEQIKPATYTKLAALAKTADPTTISSGQYLMLMEAIVRDAIAADPK MTRPSMEEPTLTEQQEYIYNWIQTVPNSEFLKFKEEYKLEDMSPADWWSK IDEIAKDNAAKGVNLPEMTLDLTKDDFLGVAREEFVKSIKQFLKVESELY PVFIISKPGCEEGAKLVNAFNKTMDIPVRTYEVFGFDAFNFKVKADYDWG EARLEAIEELTGSKELPLVYVGGKLIGGAEKVNAQIADGSLKKTVATLRQ AIVDMVEARFPKQEEESMYIGMRKVTAAEYKAYEAFQAKTGGLDPLEVNR KKAKEAAQNK* back to topmRNA from alignment at chr9:917784..921917+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03160.1 ID=NO09G03160.1|Name=NO09G03160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4134bp|location=Sequence derived from alignment at chr9:917784..921917+ (Nannochloropsis oceanica) CGCTGTCGTCGCCGTAAGCCAGAGAGCTTGACCCTTGCCCCAGATACCAT
TTCTTTATCCCCGTTTTTCTCCTCTTTGCCTTTCCCTGCATGCATGGTTT
TGCGACTCAGCATCTTTACGATGTCGGCATCTGGGTGGTCGCGAGGAAGA
GGCAGGCACTGGACGGGTGAGCCTTGCTCTACACTTCCTCTCCTGGTCGC
CTTTTGCCTCCAAGGGTTGTCATAAGTGCAAGCCGACCTTTGCTGGGGAC
TTCATGGTCTTGGGATGGCCTTGGCAAGCATCGGCCACGTTCACAATCCT
TTACTTTCCCTCACGCTGCACGGCGTATCCAATCAGGGAGAATGACCTAC
ATGATGGTCCGCATTGCGACACCTCAAGATACACGGCAATCCCTCCTCTT
TCCCATGCGCGTGGGTGGGTTGGGTCGGGTCGCTTGGCTAGGGTTGAAAG
GTCAACCAGCGGTCAGGACACGGGACGCATCGACCACCGCGGTGGCTGGA
TACTGAGAGGCATGTTTGCTGCTGCTACGCAGGTGCCTTCGCAAGCCTTG
GGCCGGACTTTGAAACCCGCCGGCGTGCAGTGTCCAAGGCATGCTGCATC
TGGACAATCGATCCGATACCGCCTTTCAGGCTTTATGGCGCTCACATTTA
TTCCTACCCCACTGCGTACATCACACCACACAGACTATAGCCTCGTTGTT
CAGATCGACCATGTCAGCGAAGACGGTAAGTCAATCAATCTCTCTTGTCC
GTGTTCGACCAAAAGCTTGCCCTGTCTCGACTCAAGCGCCCTGCAAGCAG
CCGTGAATGATAACCAGAGGAATGAGGAGGGGGCGGGGGACGGAAGTTTG
ATCACCAGGATAAGGTTTAAATGCAGCCTCGATGTCCACTGGTGTGCGTG
TGCTCTACCTTTGCGCCGGGTCGCATGCCTCGTGTATGTGAAGGATTGCA
AAACAAGACTCCCTGTAACTGTCTCTACAACCCCAGCACCAGCACATCTT
TCTCCCCTTGAACAATCTTCTCGACACATTATCTCACCTCCCGCTCTCCC
TCCGTTCCCCCCTCCTTCTCACTCACACAGGCCTTCTGCCTCGCCTTCAT
GGCCCTCCCCACTGCCTCCGCCTTCCTCTTCCCCGCCTCCCACCCCATCT
CCACCCAAGTCGGCCAACGCGTTCAACCCACCTGTGGCATGCGCGTTGCC
CCCGAGACCCGACGAGGCGCCGCTGTCGCTGCTTCGGCCGCCACCCAAGC
CAAGGCCGACACGGAGCGGGAGCTTACTTTGGCTGATGTCAAGGGCAGCA
ACTCGGACCCTGTCTGGAGCGAGGTACCGGAGGAGCTCTACTTTATTGCC
AACTACGCCGCGGCCCTCGGTGGGGAATACCCCCCCGAAAACGTGGACAA
GTCGTACTGGGAACAGATCAAGCCGGCGACCTACACTAAGCTGGCTGCCC
TTGCCAAGACGGCGGACCCGACCACCATCTCCTCCGGGCAGTACTTGATG
CTGATGGAGGCGATCGTGCGTGATGCCATCGCGGCGGACCCCAAGATGAC
CCGTCCCTCCATGGAAGAGCCCACCTTGACGGAGCAGCAGGAGTACATCT
ACAATTGGATCCAGACCGTCCCCAATTCCGAGTTCCTGAAGGTGAGGAAA
GAGCAGGAAGGAGGGAGGGAAGGAGGGAGGGAACAAGGGTCAGCAATCAT
GGGAAAGGGAAGGACGGAGTCAAGGGGAAATGACCAACGGGGAGAAGAGG
GACAAGAGAAGGGGAAAAGAGGATGAGGGTGCGTTTGAACTCATGGGGCC
TTCCTGTCGTGCTTTCTTCACCTTTCATCCCTCCTTCCGTCCATCCCACA
GTTCAAGGAGGAGTACAAGTTGGAGGACATGAGTCCTGCCGATTGGTGGT
CTAAGATCGACGAAATCGCCAAGGACAACGCCGCGAAGGGCGTTAACCTC
CCCGAGGTACGTCCTCTCCCTCCCTCCCTCTTTTCCCTCTTCCCCCCATC
CTTCTTTTGCCGTTTTTCCCACCCTTTAGCTTCCTACCGTTGCTGACCAC
GCCCTTCCCTCCTTCTCTCTCTCCCTCCCTCCCCCCCTCTTTCCCCTTAG
ATGACTTTGGACCTAACCAAGGACGACTTTTTGGGTGTGGCCCGCGAGGA
ATTCGTGAAGTCCATTAAGCAGTTCCTCAAGGTTTGTCCTTACCCCTGCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGGTACGTCCAT
GGTCTGTGTCTCTAAAAACTGACGCCCAACCCTGCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCGCTCCTCACCAGGTGGAGTCCGAGCTC
TACCCTGTATTTATCATCTCCAAGCCCGGCTGTGAGGAGGGTGCCAAGCT
AGTGAACGTGAGTCGGGCCGAGGGAGGGAGGGAGGGAGGGAAGAGCATGT
CTCATGACCGGCGAGTTCCAGCAGAGAGGAGGTTGCTTACCAAAATAACG
TCTCGTTTCCCTCCCTCCCTCCCTCAGGCCTTCAACAAGACCATGGACAT
CCCTGTGCGCACGTACGAGGTATTTGGTTTCGATGCCTTCAACTTCAAGG
TCAAGGCTGACTACGATTGGGGCGAGGCACGGCTGGAGGCGATTGAGGAG
CTGACCGGCAGCAAGGTCAGGAAGGAGGGAGGGAGGGAAGGGGGGGGTGA
GAGTGGGAGGGTGGGAAGGGGAATGGATAATCACTTTGGTGTAAGCCACA
ACGGACGGGATTGAACGAGTCGACAGGCGACATCATGGATAAGCCCCTCA
AAAAAGCAAGCCCATCTGACACGCCCTCCTTCCCCCCCCCCCTCCCTCCC
TCCCTCCTTCTCGCCTCACAGGAGTTGCCGTTGGTGTACGTGGGTGGTAA
GCTGATCGGCGGCGCCGAGAAAGTTAATGCTCAAATTGCAGACGGCAGCC
TGAAGAAGACTGTGGCGACCTTGCGACAGGTAGACAGGGTGGGAAGGAGG
GGGGGGGATGACCTCACAATAAAGAGGGATTTGGGTTGAATGAGAGGGGG
ATCTCTCTCTCCCAGCCAATGTGGGGATATAATTACAAATTCTTTCATAT
TGGTTTCTTTAATGCACTCATGCTCGTGTCTATGTCGTGGTGGACACGGC
TAGGTTCTATCTTTCAACTTAAGGGAGAAAAGACCTTGTGCAATTGAAGC
ACACACACAAGCAGCAGCTGCTTACCCCCTCCTCCCTTCCCCCCGTTCTT
CGCGCCTTTTTCTCCTTCACAGGCCATCGTGGACATGGTGGAGGCTCGCT
TTCCCAAGCAAGAGGAGGAGAGCATGTATATTGGCATGCGTAAGGTGACA
GCAGCGGAATATAAGGCCTATGAGGCGTTTCAGGCCAAGACAGGCGGATT
GGACCCCTTGGAGGTGAACCGGAAGAAGGCCAAGGAGGCGGCGCAGAATA
AGTAGGGGCTTGGGTTAGTTCTGGTTGGGAGGAGGGGGAAAAGAGGGAAG
GAGGGAGAAGGGAGTGTAGGGCGGGACAGTGGTGATGGGGGAGGGAGTAT
GTGTGCGTGTTTTTTATAAACGCCTAAGTGTCTCGTGGTACATTTTAAAG
GAGGGAAGGAAGGTAGATTGATTGGGAGGGACGGATAAAAGCGCCTGAGC
GCTGTGTCGTTTGAGATAAGATGGGATGGCGAAAGACAAAAGAAGAGAAA
GACGAAGAGAAGGAGGGAAAAGAGCTACCCGGTGGAGAAGGGTCGACGCT
TTATTAGGGTTATGTCTCTTTCTTTCATGTTTTCACCTCCTCATGCGCCT
GTCTATGTGCATGTGTGTCTGTGTTGTGCGTGCGTGCACTCCTACGTGTG
CGATGTGCCTACGTGTGGGGGGGGTTCGTGTGCACGGGGGTAGTGTGTAG
GTGTACTACTACTGCTACTGCTATTCGCTTATGATATCGGTGCGAGGGCT
CAACTCACATTTCTGTGTGACCACCAAACCCAACCATCCCCCCCTTTCCT
CCTTCCCTTGTTCCTCCTCACTGTTCTCTCTCCCTTGGACACAGAAGTAG
ATGTGCCCAGGCAGGGGTGGCAGTAGCAGCAGCAGCAGCAGCAGCGACGA
AGAGATAAGGAAATAAAAACCAGGAGGGAAAACA back to topCoding sequence (CDS) from alignment at chr9:917784..921917+ >NO09G03160.1 ID=NO09G03160.1|Name=NO09G03160.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr9:917784..921917+ (Nannochloropsis oceanica) ATGCTGCATCTGGACAATCGATCCGATACCGCCTTTCAGGCTTTATGGCG CTCACATTTATTCCTACCCCACTGCGTACATCACACCACACAGACTATAG CCTCGTTGTTCAGATCGACCATGTCAGCGAAGACGGCCTTCTGCCTCGCC TTCATGGCCCTCCCCACTGCCTCCGCCTTCCTCTTCCCCGCCTCCCACCC CATCTCCACCCAAGTCGGCCAACGCGTTCAACCCACCTGTGGCATGCGCG TTGCCCCCGAGACCCGACGAGGCGCCGCTGTCGCTGCTTCGGCCGCCACC CAAGCCAAGGCCGACACGGAGCGGGAGCTTACTTTGGCTGATGTCAAGGG CAGCAACTCGGACCCTGTCTGGAGCGAGGTACCGGAGGAGCTCTACTTTA TTGCCAACTACGCCGCGGCCCTCGGTGGGGAATACCCCCCCGAAAACGTG GACAAGTCGTACTGGGAACAGATCAAGCCGGCGACCTACACTAAGCTGGC TGCCCTTGCCAAGACGGCGGACCCGACCACCATCTCCTCCGGGCAGTACT TGATGCTGATGGAGGCGATCGTGCGTGATGCCATCGCGGCGGACCCCAAG ATGACCCGTCCCTCCATGGAAGAGCCCACCTTGACGGAGCAGCAGGAGTA CATCTACAATTGGATCCAGACCGTCCCCAATTCCGAGTTCCTGAAGTTCA AGGAGGAGTACAAGTTGGAGGACATGAGTCCTGCCGATTGGTGGTCTAAG ATCGACGAAATCGCCAAGGACAACGCCGCGAAGGGCGTTAACCTCCCCGA GATGACTTTGGACCTAACCAAGGACGACTTTTTGGGTGTGGCCCGCGAGG AATTCGTGAAGTCCATTAAGCAGTTCCTCAAGGTGGAGTCCGAGCTCTAC CCTGTATTTATCATCTCCAAGCCCGGCTGTGAGGAGGGTGCCAAGCTAGT GAACGCCTTCAACAAGACCATGGACATCCCTGTGCGCACGTACGAGGTAT TTGGTTTCGATGCCTTCAACTTCAAGGTCAAGGCTGACTACGATTGGGGC GAGGCACGGCTGGAGGCGATTGAGGAGCTGACCGGCAGCAAGGAGTTGCC GTTGGTGTACGTGGGTGGTAAGCTGATCGGCGGCGCCGAGAAAGTTAATG CTCAAATTGCAGACGGCAGCCTGAAGAAGACTGTGGCGACCTTGCGACAG GCCATCGTGGACATGGTGGAGGCTCGCTTTCCCAAGCAAGAGGAGGAGAG CATGTATATTGGCATGCGTAAGGTGACAGCAGCGGAATATAAGGCCTATG AGGCGTTTCAGGCCAAGACAGGCGGATTGGACCCCTTGGAGGTGAACCGG AAGAAGGCCAAGGAGGCGGCGCAGAATAAGTAG back to top
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