NO09G03150.1, NO09G03150.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO09G03150.1
Unique Name	NO09G03150.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1794
Alignment location	chr9:914649..917224 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr9	genome	chr9:914649..917224 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO09G03150.1 vs.
Match: EWM27493.1 (putative mitochondrial aspartate-glutamate transporter [Nannochloropsis gaditana])

HSP 1 Score: 502.7 bits (1293), Expect = 8.200e-139
Identity = 262/304 (86.18%), Postives = 279/304 (91.78%), Query Frame = 0

Query:    1 MSAAVAAV-SGTEEIAIDMKKPVPKVPLAAKLVVGAVAGVVGTVCIFPIDMVKTRLQSGNALYTGPISAAKAILKSEGVAGFYRGLGANLAGVTPEKAIKLAANDLLREALELPDGTLPLHREMMAGAGAGLCQVVATNPMEIVKIRMQMQALLPAAERQGTMDVVRGLGLRGMYQGTTATLSRDIPFSLIFFPLYANLKRAFADKTTGDNSIVSLLGAGGLAGAMGSWAATPADVIKTRLQLVGGKEKYGDIGNCFRTVLKEEGPTALFKGSVPRMCVVAPLFGIALLSFEMQKEYMIKSGML 304
            MSA VAA  + TE++A+++KK  PKVPLAAKLVVGAVAGVVGT CIFPIDMVKTRLQSGNA YTGPISAA +ILK+EGVAGFYRGLG NL GVTPEKAIKLAANDL+REALE PDG+LPLH+EM+AGAGAGLCQVVATNPMEIVKIRMQMQALLP AERQ TM+VVRGLGLRGMYQGTTATLSRDIPFSLIFFPLYANLK+AFAD  T +NSI SLLGAGGLAGAMGSWAATPADVIKTRLQL GGKEKY D+  CFR VLKEEG +ALFKGSVPRMCVVAPLFGIALLSFEMQK YMIKSGML
Sbjct:    1 MSAVVAAPPASTEDVALEVKK-APKVPLAAKLVVGAVAGVVGTTCIFPIDMVKTRLQSGNAQYTGPISAASSILKNEGVAGFYRGLGPNLVGVTPEKAIKLAANDLIREALESPDGSLPLHKEMIAGAGAGLCQVVATNPMEIVKIRMQMQALLPPAERQSTMEVVRGLGLRGMYQGTTATLSRDIPFSLIFFPLYANLKKAFADPKTKENSIASLLGAGGLAGAMGSWAATPADVIKTRLQLAGGKEKYKDMQTCFRMVLKEEGVSALFKGSVPRMCVVAPLFGIALLSFEMQKNYMIKSGML 303

The following BLAST results are available for this feature:

BLAST of NO09G03150.1 vs.

BLAST of NO09G03150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM27493.1	8.200e-139	86.18	putative mitochondrial aspartate-glutamate transpo...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO09G03150	NO09G03150	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO09G03150.1	NO09G03150.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO09G03150.1.cds1	NO09G03150.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G03150.1.cds2	NO09G03150.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G03150.1.cds3	NO09G03150.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G03150.1.cds4	NO09G03150.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO09G03150.1.cds5	NO09G03150.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:914649..917224-
coding sequence from alignment at chr9:914649..917224-

mRNA sequence

>NO09G03150.1 ID=NO09G03150.1|Name=NO09G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1794bp
AGGCTAGCTCGTTTTCCACCCCTCTGCCTCCACAACATCATCATGTCTGC
TGCCGTTGCTGCTGTCTCTGGGACAGAGGAGATTGCCATTGACATGAAGA
AGCCTGTGCCCAAGGTTCCTCTCGCTGCCAAGTTGGTCGTCGGAGCCGTG
GCGGGCGTAGTGGGCACCGTCTGTATCTTCCCCATTGACATGGTCAAAAC
GCGCCTACAAAGCGGGAACGCTCTCTACACCGGCCCCATCTCGGCCGCCA
AGGCTATCCTTAAGAGCGAAGGCGTGGCAGGTTTCTACCGTGGTCTGGGT
GCGAACCTGGCAGGCGTCACGCCCGAGAAGGCCATCAAGCTGGCAGCAAA
CGACTTGCTGCGTGAGGCGTTAGAACTCCCTGACGGGACCCTACCGCTGC
ACCGAGAGATGATGGCGGGCGCCGGCGCGGGTCTGTGTCAAGTGGTGGCG
ACGAATCCCATGGAGATCGTCAAAATCCGCATGCAGATGCAGGCTTTGCT
GCCAGCTGCGGAGCGCCAGGGGACCATGGATGTGGTCCGGGGACTAGGCT
TGAGGGGCATGTACCAAGGCACTACCGCCACGCTCTCGCGAGACATCCCG
TTCTCGTTGATCTTCTTCCCGCTCTACGCGAACTTGAAGAGGGCGTTTGC
GGATAAGACGACAGGGGATAATTCGATTGTGTCTCTGTTGGGGGCGGGGG
GGCTGGCGGGAGCGATGGGGTCGTGGGCAGCAACCCCGGCGGATGTGATC
AAGACGAGGTTGCAACTGGTGGGGGGGAAGGAGAAATATGGAGACATTGG
GAACTGTTTCAGGACCGTCCTGAAGGAGGAGGGCCCGACAGCCTTATTCA
AGGGCAGTGTGCCACGAATGTGTGTGGTTGCGCCTTTGTTCGGGATCGCC
CTCTTGTCGTTTGAGATGCAGAAGGAATACATGATCAAGAGCGGCATGTT
GGGCTAAGCGGAGAAGGAGGAGGAGGAGGAGAATACAGTGGTGGTGGTGG
TGGAGGAGGAGGAGGAGGGAGTCGATTTTTTCTACTATCCCGCTACTTCT
CTCTTCTCCCCTCAGCAACTGCGTTGGGGAAGGGGCATTAGTAGAAGGGG
GGCCTGAGGGAGCGGTGGCCCGGTGGAAACAGGGAGCAGATGGGCGTAAG
GAAGGAGCGGAGGTTGGGAAGGAGACGGAGTAGGAAGAGGAACAGAGGTT
ATAACCTTCGACTTTGTTCAACTGACGTGATTAACTATCAATTCTTTGAG
GTATTTCGTGTGCATGGTCATGGTGGTACGTCTTGGGGAAAAAATCAACC
GTAATTTTCTTTGTTCTGGTCCGTGTATGTGTGTGACAGAGAGTGTGTGT
GTCTTTATGCTTTCAGACCGTCAAAGAGTGCGTGCATATTTTGACTTTAA
AGTCAATAAATTGGGGAACGGATTGGTTTTGATAGCAGTGGTAGTGCATG
AGGGAGAGGAAGAAGGTTCATTTTTGGTTAGGTAGAGGCTTTTGTAATTA
ACTTAGAACGAGATAGCCTGTCAATTCTTATATCTCTTCCTCCTAATCCT
CTCTTCTACGGTGAAGATAAAGAGAGGATGGAGGGACAAAGCAAGAGTTG
TCGCGTGAGATGCGAGGTGGTACAAGGGGAGGCAGGGAGGGAGGGAAGCA
GGGCAGGTGTCACGTGATGGACAAGGAGGAGCAGAGGGACGGTACCCTGT
GCATTCTGAGAGAGGCAGAGGCGAAATAAAAGGGAAGGAGGAAGAAATGG
GAACGTGGTAAAACACAAAAAAACAGAAGAAAAAACAGAAGTCA

protein sequence of NO09G03150.1

>NO09G03150.1-protein ID=NO09G03150.1-protein|Name=NO09G03150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MSAAVAAVSGTEEIAIDMKKPVPKVPLAAKLVVGAVAGVVGTVCIFPIDM
VKTRLQSGNALYTGPISAAKAILKSEGVAGFYRGLGANLAGVTPEKAIKL
AANDLLREALELPDGTLPLHREMMAGAGAGLCQVVATNPMEIVKIRMQMQ
ALLPAAERQGTMDVVRGLGLRGMYQGTTATLSRDIPFSLIFFPLYANLKR
AFADKTTGDNSIVSLLGAGGLAGAMGSWAATPADVIKTRLQLVGGKEKYG
DIGNCFRTVLKEEGPTALFKGSVPRMCVVAPLFGIALLSFEMQKEYMIKS
GMLG*

mRNA from alignment at chr9:914649..917224-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO09G03150.1 ID=NO09G03150.1|Name=NO09G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2576bp|location=Sequence derived from alignment at chr9:914649..917224- (Nannochloropsis oceanica)
AGGCTAGCTCGTTTTCCACCCCTCTGCCTCCACAACATCATCATGTCTGC
TGCCGTTGCTGCTGTCTCTGGGACAGAGGAGATTGCCATTGACATGAAGA
AGCCTGTGCCCAAGGTAAGAGAGATTTCCAGCCGGAAGCCAGAGGCGGGG
GTATTGGCCTGTCCTTCCTGCATCCCGTCGAGCACTTTTTACTCACGCTG
CTGTCTCTCCTCTCCACCCACCAGGTTCCTCTCGCTGCCAAGTTGGTCGT
CGGAGCCGTGGCGGGCGTAGTGGGCACCGTCTGTATCTTCCCCATTGGTA
CGTGTGAGGACAAGATGATACACGCCAACAAGAGGGGGTGTGCGGATGGC
ACAGGACACTATAACACGTGCATGCTGTGTCTACGCTCGGCCCAGGGTAC
TTCATGTTAAGCCTATTCATGGCCTCAAGACAGTCCTGTACTTTATCTCC
CATCTCCCTTTTCCTCATCTTAGATCGCTGCCCCACCGCTCGTCGTTCGC
TTGAGCATTTATTCTTCATCCCTTCTCATCCTAACATCATCACCGACCCC
CTTTCCTGCCACTCTCCTCTCCCCCCTCGAACAGACATGGTCAAAACGCG
CCTACAAAGCGGGAACGCTCTCTACACCGGCCCCATCTCGGCCGCCAAGG
CTATCCTTAAGAGCGAAGGCGTGGCAGGTTTCTACCGTGGTATGTGCTCC
GCGCCCTTTTCTCCATCTCTCTTCCCCGCTTCTCCGTCCTCCCGTGATCC
TGCTTGCTCAACTGTGGCTCTTTCTTTTACTCACTGATCTCTTCCCTCCC
CTTCCTCCCGCCCTCCCTCCATCCCTCCTTCCCAGGTCTGGGTGCGAACC
TGGCAGGCGTCACGCCCGAGAAGGCCATCAAGCTGGCAGCAAACGACTTG
CTGCGTGAGGCGTTAGAACTCCCTGACGGGACCCTACCGCTGCACCGAGA
GATGATGGCGGGCGCCGGTAAGACGGGAGGGATGAAGGAAAGGAGGGAGG
GAGGGAGGGAGAGGGCGAGGAAGGGCAGGAGGACGTTGGGAGATGGAGCG
GATTCTGCGTACAAATTACCACCCCCATCTTTTCGTTCTAAAAACGATTG
CATCATCTATCATCGCCCTCCCCCGCACTGCTTTTCCTGTCCTCAATATC
TCTCCTTCCCCTCTTATCTATCCTGACCCCTTCTACCCTTGCACCTACCC
TCGCAGGCGCGGGTCTGTGTCAAGTGGTGGCGACGAATCCCATGGAGATC
GTCAAAATCCGCATGCAGATGCAGGCTTTGCTGCCAGCTGCGGAGCGCCA
GGGGACCATGGATGTGGTCCGGGGACTAGGCTTGAGGGGCATGTACCAAG
GCACTACCGCCACGCTCTCGCGAGACATCCCGTTCTCGTTGATCTTCTTC
CCGCTCTACGCGAACTTGAAGAGGGCGTTTGCGGATAAGACGACAGGGGA
TAATTCGATTGTGTCTCTGTTGGGGGCGGGGGGGCTGGCGGGAGCGATGG
GGTCGTGGGCAGCAACCCCGGCGGATGTGATCAAGACGAGGTTGCAACTG
GTGGGGGGGAAGGAGAAATATGGAGACATTGGGAACTGTTTCAGGACCGT
CCTGAAGGAGGAGGGCCCGACAGCCTTATTCAAGGGCAGTGTGCCACGAA
TGTGTGTGGTTGCGCCTTTGTTCGGGATCGCCCTCTTGTCGTTTGAGATG
CAGAAGGAATACATGATCAAGAGCGGCATGTTGGGCTAAGCGGAGAAGGA
GGAGGAGGAGGAGAATACAGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGG
GAGTCGATTTTTTCTACTATCCCGCTACTTCTCTCTTCTCCCCTCAGCAA
CTGCGTTGGGGAAGGGGCATTAGTAGAAGGGGGGCCTGAGGGAGCGGTGG
CCCGGTGGAAACAGGGAGCAGATGGGCGTAAGGAAGGAGCGGAGGTTGGG
AAGGAGACGGAGTAGGAAGAGGAACAGAGGTTATAACCTTCGACTTTGTT
CAACTGACGTGATTAACTATCAATTCTTTGAGGTATTTCGTGTGCATGGT
CATGGTGGTACGTCTTGGGGAAAAAATCAACCGTAATTTTCTTTGTTCTG
GTCCGTGTATGTGTGTGACAGAGAGTGTGTGTGTCTTTATGCTTTCAGAC
CGTCAAAGAGTGCGTGCATATTTTGACTTTAAAGTCAATAAATTGGGGAA
CGGATTGGTTTTGATAGCAGTGGTAGTGCATGAGGGAGAGGAAGAAGGTT
CATTTTTGGTTAGGTAGAGGCTTTTGTAATTAACTTAGAACGAGATAGCC
TGTCAATTCTTATATCTCTTCCTCCTAATCCTCTCTTCTACGGTGAAGAT
AAAGAGAGGATGGAGGGACAAAGCAAGAGTTGTCGCGTGAGATGCGAGGT
GGTACAAGGGGAGGCAGGGAGGGAGGGAAGCAGGGCAGGTGTCACGTGAT
GGACAAGGAGGAGCAGAGGGACGGTACCCTGTGCATTCTGAGAGAGGCAG
AGGCGAAATAAAAGGGAAGGAGGAAGAAATGGGAACGTGGTAAAACACAA
AAAAACAGAAGAAAAAACAGAAGTCA

Coding sequence (CDS) from alignment at chr9:914649..917224-

>NO09G03150.1 ID=NO09G03150.1|Name=NO09G03150.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr9:914649..917224- (Nannochloropsis oceanica)
ATGTCTGCTGCCGTTGCTGCTGTCTCTGGGACAGAGGAGATTGCCATTGA
CATGAAGAAGCCTGTGCCCAAGGTTCCTCTCGCTGCCAAGTTGGTCGTCG
GAGCCGTGGCGGGCGTAGTGGGCACCGTCTGTATCTTCCCCATTGACATG
GTCAAAACGCGCCTACAAAGCGGGAACGCTCTCTACACCGGCCCCATCTC
GGCCGCCAAGGCTATCCTTAAGAGCGAAGGCGTGGCAGGTTTCTACCGTG
GTCTGGGTGCGAACCTGGCAGGCGTCACGCCCGAGAAGGCCATCAAGCTG
GCAGCAAACGACTTGCTGCGTGAGGCGTTAGAACTCCCTGACGGGACCCT
ACCGCTGCACCGAGAGATGATGGCGGGCGCCGGCGCGGGTCTGTGTCAAG
TGGTGGCGACGAATCCCATGGAGATCGTCAAAATCCGCATGCAGATGCAG
GCTTTGCTGCCAGCTGCGGAGCGCCAGGGGACCATGGATGTGGTCCGGGG
ACTAGGCTTGAGGGGCATGTACCAAGGCACTACCGCCACGCTCTCGCGAG
ACATCCCGTTCTCGTTGATCTTCTTCCCGCTCTACGCGAACTTGAAGAGG
GCGTTTGCGGATAAGACGACAGGGGATAATTCGATTGTGTCTCTGTTGGG
GGCGGGGGGGCTGGCGGGAGCGATGGGGTCGTGGGCAGCAACCCCGGCGG
ATGTGATCAAGACGAGGTTGCAACTGGTGGGGGGGAAGGAGAAATATGGA
GACATTGGGAACTGTTTCAGGACCGTCCTGAAGGAGGAGGGCCCGACAGC
CTTATTCAAGGGCAGTGTGCCACGAATGTGTGTGGTTGCGCCTTTGTTCG
GGATCGCCCTCTTGTCGTTTGAGATGCAGAAGGAATACATGATCAAGAGC
GGCATGTTGGGCTAA

Synonyms

Publications