NO09G03140.1, NO09G03140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03140.1
Unique NameNO09G03140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1351
Alignment locationchr9:913151..914501 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:913151..914501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03140.1 vs.
Match: EWM27502.1 (hypothetical protein Naga_100099g20 [Nannochloropsis gaditana])

HSP 1 Score: 199.9 bits (507), Expect = 9.000e-48
Identity = 118/245 (48.16%), Postives = 160/245 (65.31%), Query Frame = 0 
Query:    5 AHDDVLEQLAVRLARVEAEIVGPGNEHLVRSLAVSSAAAGGGTSSSV----IWRRLLQVTARVETNARRLGDAALLRQLEKDLFMPSQSSSS----------ATSAGAGGGRDELCLPPPSGTALLGLPEKEALILGQEEEFRQTMAYLQNIDELKAYITGPFLEGKGGKEEVALHQRLTKLEMEFWDMEAVAVALAREMEEMLTVYDEVVELLSRKCVEWEGTLASMARRKERRKERREREGGG 236
            +HD+ LE+LA+RLARVEA+I GPG+++++   A SS   GG          +W+R+L+ +  VE  ARR+G+  +L +LE +LF    S S           A+   A    D   +PPPS   L+G+PEK  L+L +EEE R+T+A L  IDELKA+I+GPFLEG G +EE AL+ +L ++E +FWD+EAVA AL REMEE+LTVYDEVVE LS KCVEWEG LA+  + ++R    R RE  G
Sbjct:    7 SHDEALEELAIRLARVEAKIFGPGDDNILHIRASSSE--GGSPERRACPMELWQRVLKASKCVEEYARRMGEKPVLNELETELFNAPHSLSRSAFRRKGFPPASINQAAAPPDGPSVPPPSSNVLVGIPEKTTLVLAKEEETRRTLALLSEIDELKAFISGPFLEGGGHREEAALYTQLQRVERDFWDVEAVAFALTREMEEVLTVYDEVVERLSGKCVEWEGVLAARWKARKRGFGARNREKDG 249
The following BLAST results are available for this feature:
BLAST of NO09G03140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27502.19.000e-4848.16hypothetical protein Naga_100099g20 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03140NO09G03140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03140.1NO09G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03140.1.cds1NO09G03140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03140.1 ID=NO09G03140.1|Name=NO09G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp
ATAGATTTGTCCTCTCATCCCCATAGCTTGGCGCACCACGGCGACAACTT
CACCGCCTAAATTTCTTCGGCGAGGCGGCTTCCGTACGGCACACCACTCA
CCCAGCAGTACCCACACCATGGCCACGTTCGCGCACGACGATGTTCTGGA
GCAGCTAGCGGTACGCCTGGCCAGGGTTGAGGCTGAAATTGTTGGTCCTG
GCAACGAACACCTGGTTCGTTCCCTTGCGGTCTCCTCTGCCGCAGCTGGA
GGCGGAACGAGCTCGAGTGTGATATGGCGACGGCTCTTGCAGGTGACCGC
GCGCGTGGAAACCAATGCCCGCAGGCTGGGCGATGCTGCACTCCTGCGAC
AGCTGGAAAAGGATCTGTTCATGCCCTCCCAGTCTTCCTCCTCTGCGACA
TCAGCAGGGGCAGGAGGAGGGAGGGACGAGTTGTGCCTGCCTCCCCCATC
GGGCACGGCCTTGCTTGGACTCCCCGAAAAGGAGGCCCTGATATTGGGCC
AAGAAGAGGAATTTCGACAAACTATGGCTTACCTCCAAAACATCGACGAA
CTAAAAGCGTACATCACCGGGCCATTTCTCGAGGGGAAGGGAGGGAAGGA
GGAAGTGGCGTTGCATCAACGCCTGACAAAACTTGAAATGGAGTTTTGGG
ACATGGAGGCGGTGGCTGTGGCGCTGGCGAGGGAGATGGAAGAGATGCTG
ACGGTGTATGATGAGGTGGTGGAGTTGTTGTCGAGAAAATGTGTTGAGTG
GGAGGGAACGTTGGCGAGCATGGCGAGGAGGAAGGAGAGGAGGAAGGAGA
GGAGGGAGAGGGAGGGAGGAGGAGGAGGGAGGAGAGAAGGGTGATGGGAG
AAGAGAAAGTCTTTGTAAGTTATTTCGATGGTATACGATGGGACGAAAAT
TCTTTCTCTCCGTATTTTTCTTCTGTTTCTTTGTTCGCTTGAACGCTATC
AACACTTTTCCCCCCGGCTTGCTCCTCTCCTTTCCTCCTTCCCTCCCTCT
ATCCCTCCATCTCTTTCTTCTTATCTACTGATCCTGCTGCTTTACTCAGC
CCCCTTCGGTCTCAAGGCCCTGACCGGGTTACTCCTACCAGCATGACATG
GTCGTGCCACACCACCAGAAGGCCCTTTACGTCAAGGGCGCCGTCATTAT
GAAGGAAGGCTCCCGGCCACCCTATCTCGATCCCTACTGATTCCCCCCTC
CCTCAATCCTTCCTCGAAATCACGATTTTGGGATCAAGCTTTCTCGAAAA
AGAGAAGAGATGAAAGAGCTTGAAATGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAACATGCTATCTACATTTCGTGCATGTCCCCCCCCCTTCCCCCCG
C
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protein sequence of NO09G03140.1

>NO09G03140.1-protein ID=NO09G03140.1-protein|Name=NO09G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MATFAHDDVLEQLAVRLARVEAEIVGPGNEHLVRSLAVSSAAAGGGTSSS
VIWRRLLQVTARVETNARRLGDAALLRQLEKDLFMPSQSSSSATSAGAGG
GRDELCLPPPSGTALLGLPEKEALILGQEEEFRQTMAYLQNIDELKAYIT
GPFLEGKGGKEEVALHQRLTKLEMEFWDMEAVAVALAREMEEMLTVYDEV
VELLSRKCVEWEGTLASMARRKERRKERREREGGGGGRREG*
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mRNA from alignment at chr9:913151..914501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03140.1 ID=NO09G03140.1|Name=NO09G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1351bp|location=Sequence derived from alignment at chr9:913151..914501- (Nannochloropsis oceanica)
ATAGATTTGTCCTCTCATCCCCATAGCTTGGCGCACCACGGCGACAACTT
CACCGCCTAAATTTCTTCGGCGAGGCGGCTTCCGTACGGCACACCACTCA
CCCAGCAGTACCCACACCATGGCCACGTTCGCGCACGACGATGTTCTGGA
GCAGCTAGCGGTACGCCTGGCCAGGGTTGAGGCTGAAATTGTTGGTCCTG
GCAACGAACACCTGGTTCGTTCCCTTGCGGTCTCCTCTGCCGCAGCTGGA
GGCGGAACGAGCTCGAGTGTGATATGGCGACGGCTCTTGCAGGTGACCGC
GCGCGTGGAAACCAATGCCCGCAGGCTGGGCGATGCTGCACTCCTGCGAC
AGCTGGAAAAGGATCTGTTCATGCCCTCCCAGTCTTCCTCCTCTGCGACA
TCAGCAGGGGCAGGAGGAGGGAGGGACGAGTTGTGCCTGCCTCCCCCATC
GGGCACGGCCTTGCTTGGACTCCCCGAAAAGGAGGCCCTGATATTGGGCC
AAGAAGAGGAATTTCGACAAACTATGGCTTACCTCCAAAACATCGACGAA
CTAAAAGCGTACATCACCGGGCCATTTCTCGAGGGGAAGGGAGGGAAGGA
GGAAGTGGCGTTGCATCAACGCCTGACAAAACTTGAAATGGAGTTTTGGG
ACATGGAGGCGGTGGCTGTGGCGCTGGCGAGGGAGATGGAAGAGATGCTG
ACGGTGTATGATGAGGTGGTGGAGTTGTTGTCGAGAAAATGTGTTGAGTG
GGAGGGAACGTTGGCGAGCATGGCGAGGAGGAAGGAGAGGAGGAAGGAGA
GGAGGGAGAGGGAGGGAGGAGGAGGAGGGAGGAGAGAAGGGTGATGGGAG
AAGAGAAAGTCTTTGTAAGTTATTTCGATGGTATACGATGGGACGAAAAT
TCTTTCTCTCCGTATTTTTCTTCTGTTTCTTTGTTCGCTTGAACGCTATC
AACACTTTTCCCCCCGGCTTGCTCCTCTCCTTTCCTCCTTCCCTCCCTCT
ATCCCTCCATCTCTTTCTTCTTATCTACTGATCCTGCTGCTTTACTCAGC
CCCCTTCGGTCTCAAGGCCCTGACCGGGTTACTCCTACCAGCATGACATG
GTCGTGCCACACCACCAGAAGGCCCTTTACGTCAAGGGCGCCGTCATTAT
GAAGGAAGGCTCCCGGCCACCCTATCTCGATCCCTACTGATTCCCCCCTC
CCTCAATCCTTCCTCGAAATCACGATTTTGGGATCAAGCTTTCTCGAAAA
AGAGAAGAGATGAAAGAGCTTGAAATGAAGAAGAAGAAGAAGAAGAAGAA
GAAGAAACATGCTATCTACATTTCGTGCATGTCCCCCCCCCTTCCCCCCG
C
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Coding sequence (CDS) from alignment at chr9:913151..914501-

>NO09G03140.1 ID=NO09G03140.1|Name=NO09G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at chr9:913151..914501- (Nannochloropsis oceanica)
ATGGCCACGTTCGCGCACGACGATGTTCTGGAGCAGCTAGCGGTACGCCT
GGCCAGGGTTGAGGCTGAAATTGTTGGTCCTGGCAACGAACACCTGGTTC
GTTCCCTTGCGGTCTCCTCTGCCGCAGCTGGAGGCGGAACGAGCTCGAGT
GTGATATGGCGACGGCTCTTGCAGGTGACCGCGCGCGTGGAAACCAATGC
CCGCAGGCTGGGCGATGCTGCACTCCTGCGACAGCTGGAAAAGGATCTGT
TCATGCCCTCCCAGTCTTCCTCCTCTGCGACATCAGCAGGGGCAGGAGGA
GGGAGGGACGAGTTGTGCCTGCCTCCCCCATCGGGCACGGCCTTGCTTGG
ACTCCCCGAAAAGGAGGCCCTGATATTGGGCCAAGAAGAGGAATTTCGAC
AAACTATGGCTTACCTCCAAAACATCGACGAACTAAAAGCGTACATCACC
GGGCCATTTCTCGAGGGGAAGGGAGGGAAGGAGGAAGTGGCGTTGCATCA
ACGCCTGACAAAACTTGAAATGGAGTTTTGGGACATGGAGGCGGTGGCTG
TGGCGCTGGCGAGGGAGATGGAAGAGATGCTGACGGTGTATGATGAGGTG
GTGGAGTTGTTGTCGAGAAAATGTGTTGAGTGGGAGGGAACGTTGGCGAG
CATGGCGAGGAGGAAGGAGAGGAGGAAGGAGAGGAGGGAGAGGGAGGGAG
GAGGAGGAGGGAGGAGAGAAGGGTGA
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Synonyms
Publications