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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:907157..908620 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03110.1 vs.
Match: EWM27494.1 (ammonium transporter [Nannochloropsis gaditana]) HSP 1 Score: 840.9 bits (2171), Expect = 2.000e-240 Identity = 426/489 (87.12%), Postives = 455/489 (93.05%), Query Frame = 0
Query: 3 DKITKKRVITASVLSVIFALCIAMTVFDSKDG-SFIMADDDASVIAYNDAYPTDEEPKLLPGDIAWMLTSTALVLLMTPGLAFFYGGMVRAKNVISTLLQSFMAMGVITILWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAADTNFSATIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFIILFSLFIYCPLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRKDVKKMQPANIPFVMLGTALLWFGWFGFNAGSALAASPLAVQAFLTTNTATAAAMLTWVFVDHIRGSKSTAMGACVGAVVGLVVITPGAGFVTIGGSACMGIIGAVISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCFCTSTVNPDSPDGLFYGDPTTFWHHLVALVCIIPFIMGMSFVCYQITNFIYPLRCGEKSEKLGLDMSQHKETIILEDE---GMEKPVDDLDASSRIELGSM 488
DKI K+R+IT SVLS++ AL IAMT FD+K G ++IMADDD S+I YN A PT+EEP+LLPGDIAWML +TALVLLMTPGLAFFYGGMVRAKNVISTLL SF+AMGVIT+LWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAADTNFS TIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFI+LFSLF+YCPLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRK+V KMQPANIPFVMLGTALLWFGWFGFNAGSALAA P+AVQAFLTTNTATAAAMLTWVFVDH+RGSKSTAMGACVGAVVGLVVITPGAGFVT+GG+ACMG+IGA ISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCF T + N D DGLFYGD T FWHHLVALVC+IP+IMGMSF+CYQITN IYPLR GEKSEKLGLDMSQHKE+I++ DE + KP DDLDASSRIELGSM
Sbjct: 56 DKIVKRRIITGSVLSLLLALSIAMTCFDAKKGGAYIMADDDPSIINYNAALPTEEEPQLLPGDIAWMLAATALVLLMTPGLAFFYGGMVRAKNVISTLLMSFVAMGVITMLWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAADTNFSNTIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFIVLFSLFVYCPLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRKNVGKMQPANIPFVMLGTALLWFGWFGFNAGSALAADPVAVQAFLTTNTATAAAMLTWVFVDHLRGSKSTAMGACVGAVVGLVVITPGAGFVTVGGAACMGMIGAFISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCFATVSANADGADGLFYGDATLFWHHLVALVCLIPYIMGMSFLCYQITNLIYPLRVGEKSEKLGLDMSQHKESIMVHDEEEDDVVKPADDLDASSRIELGSM 544
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03110.1 ID=NO09G03110.1|Name=NO09G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp ATGATCGACAAGATAACCAAGAAGCGGGTCATTACCGCCTCCGTGCTGAG CGTCATCTTTGCCCTGTGCATCGCCATGACGGTCTTCGACAGCAAGGACG GAAGCTTCATTATGGCGGATGACGACGCTTCCGTGATTGCCTACAATGAT GCCTACCCGACTGACGAGGAGCCTAAGCTCCTGCCTGGTGACATAGCGTG GATGCTCACCTCCACTGCTCTTGTCTTGCTCATGACTCCCGGCCTGGCCT TCTTCTACGGCGGCATGGTGCGTGCCAAGAACGTGATTTCCACCTTGCTC CAGTCGTTTATGGCCATGGGTGTTATCACGATCCTCTGGACTGTCGTCGG TTTCTCCCTGGCCTTTGGTGACTCCCTCTCGGGCTACATGGGCAACCCCG CCACCTTCCCCTTCTATAACAATGTGGGCGCAGCCGCCGATACTAACTTC TCCGCCACGATTCCCCTGGCGCTTTACTCCCTCTTTCAGCTCAAGTTTGC TATTATTACCCCTGCTTTGATTTCGGGCGCCATTGCTGAGCGTGTCCGCT TCACCTCTTACATCATCTTCATTATCCTCTTCTCCCTCTTCATCTACTGC CCTCTGGCCCACATGACCTGGCACCCGGACGGTCTCCTTGCCAAGGCCGG CATCCTGGATTTCGCCGGCGGCACCGTCGTACACATGTCCTCGGGTTACG CGGCATTGGTTGGCTCGATCATCCTGGGGCCCCGTAAGGACGTGAAGAAG ATGCAGCCCGCCAACATCCCCTTCGTCATGCTCGGAACTGCCCTCCTGTG GTTTGGATGGTTTGGTTTCAACGCCGGCTCGGCCCTTGCGGCGTCTCCGT TAGCAGTGCAGGCTTTCTTGACCACCAACACGGCTACAGCGGCTGCCATG CTTACGTGGGTTTTCGTGGACCACATCCGTGGGAGCAAGTCCACCGCCAT GGGCGCATGTGTTGGGGCTGTGGTAGGGCTCGTCGTGATCACACCCGGCG CCGGGTTCGTCACCATCGGTGGCTCGGCGTGCATGGGCATTATCGGCGCT GTGATTTCCAACGTCGTGGCCCATTACTTTAACACCAAGGCGAACATTGA TGATACGTTGGACGTGTGGCCTTGCCACGGCCTGGGCGGGACTGTTGGCA TGGTCCTCACCTCGTGCTTCTGCACCAGCACCGTTAACCCAGACTCTCCG GACGGCTTGTTCTACGGAGACCCCACCACGTTCTGGCACCATCTAGTGGC GCTTGTGTGCATCATCCCTTTCATCATGGGCATGTCCTTTGTCTGCTACC AGATCACGAACTTCATCTACCCTCTGCGTTGTGGTGAGAAATCCGAAAAG CTCGGCCTGGACATGTCGCAGCACAAGGAGACCATCATCCTTGAGGATGA GGGCATGGAGAAGCCCGTCGACGACTTGGATGCGTCCAGCCGCATTGAGC TTGGCTCCATGTAA back to topprotein sequence of NO09G03110.1 >NO09G03110.1-protein ID=NO09G03110.1-protein|Name=NO09G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp MIDKITKKRVITASVLSVIFALCIAMTVFDSKDGSFIMADDDASVIAYND AYPTDEEPKLLPGDIAWMLTSTALVLLMTPGLAFFYGGMVRAKNVISTLL QSFMAMGVITILWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAADTNF SATIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFIILFSLFIYC PLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRKDVKK MQPANIPFVMLGTALLWFGWFGFNAGSALAASPLAVQAFLTTNTATAAAM LTWVFVDHIRGSKSTAMGACVGAVVGLVVITPGAGFVTIGGSACMGIIGA VISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCFCTSTVNPDSP DGLFYGDPTTFWHHLVALVCIIPFIMGMSFVCYQITNFIYPLRCGEKSEK LGLDMSQHKETIILEDEGMEKPVDDLDASSRIELGSM* back to topmRNA from alignment at chr9:907157..908620+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03110.1 ID=NO09G03110.1|Name=NO09G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp|location=Sequence derived from alignment at chr9:907157..908620+ (Nannochloropsis oceanica) ATGATCGACAAGATAACCAAGAAGCGGGTCATTACCGCCTCCGTGCTGAG
CGTCATCTTTGCCCTGTGCATCGCCATGACGGTCTTCGACAGCAAGGACG
GAAGCTTCATTATGGCGGATGACGACGCTTCCGTGATTGCCTACAATGAT
GCCTACCCGACTGACGAGGAGCCTAAGCTCCTGCCTGGTGACATAGCGTG
GATGCTCACCTCCACTGCTCTTGTCTTGCTCATGACTCCCGGCCTGGCCT
TCTTCTACGGCGGCATGGTGCGTGCCAAGAACGTGATTTCCACCTTGCTC
CAGTCGTTTATGGCCATGGGTGTTATCACGATCCTCTGGACTGTCGTCGG
TTTCTCCCTGGCCTTTGGTGACTCCCTCTCGGGCTACATGGGCAACCCCG
CCACCTTCCCCTTCTATAACAATGTGGGCGCAGCCGCCGATACTAACTTC
TCCGCCACGATTCCCCTGGCGCTTTACTCCCTCTTTCAGCTCAAGTTTGC
TATTATTACCCCTGCTTTGATTTCGGGCGCCATTGCTGAGCGTGTCCGCT
TCACCTCTTACATCATCTTCATTATCCTCTTCTCCCTCTTCATCTACTGC
CCTCTGGCCCACATGACCTGGCACCCGGACGGTCTCCTTGCCAAGGCCGG
CATCCTGGATTTCGCCGGCGGCACCGTCGTACACATGTCCTCGGGTTACG
CGGCATTGGTTGGCTCGATCATCCTGGGGCCCCGTAAGGACGTGAAGAAG
ATGCAGCCCGCCAACATCCCCTTCGTCATGCTCGGAACTGCCCTCCTGTG
GTTTGGATGGTTTGGTTTCAACGCCGGCTCGGCCCTTGCGGCGTCTCCGT
TAGCAGTGCAGGCTTTCTTGACCACCAACACGGCTACAGCGGCTGCCATG
CTTACGTGGGTTTTCGTGGACCACATCCGTGGGAGCAAGTCCACCGCCAT
GGGCGCATGTGTTGGGGCTGTGGTAGGGCTCGTCGTGATCACACCCGGCG
CCGGGTTCGTCACCATCGGTGGCTCGGCGTGCATGGGCATTATCGGCGCT
GTGATTTCCAACGTCGTGGCCCATTACTTTAACACCAAGGCGAACATTGA
TGATACGTTGGACGTGTGGCCTTGCCACGGCCTGGGCGGGACTGTTGGCA
TGGTCCTCACCTCGTGCTTCTGCACCAGCACCGTTAACCCAGACTCTCCG
GACGGCTTGTTCTACGGAGACCCCACCACGTTCTGGCACCATCTAGTGGC
GCTTGTGTGCATCATCCCTTTCATCATGGGCATGTCCTTTGTCTGCTACC
AGATCACGAACTTCATCTACCCTCTGCGTTGTGGTGAGAAATCCGAAAAG
CTCGGCCTGGACATGTCGCAGCACAAGGAGACCATCATCCTTGAGGATGA
GGGCATGGAGAAGCCCGTCGACGACTTGGATGCGTCCAGCCGCATTGAGC
TTGGCTCCATGTAA back to topCoding sequence (CDS) from alignment at chr9:907157..908620+ >NO09G03110.1 ID=NO09G03110.1|Name=NO09G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr9:907157..908620+ (Nannochloropsis oceanica) ATGATCGACAAGATAACCAAGAAGCGGGTCATTACCGCCTCCGTGCTGAG CGTCATCTTTGCCCTGTGCATCGCCATGACGGTCTTCGACAGCAAGGACG GAAGCTTCATTATGGCGGATGACGACGCTTCCGTGATTGCCTACAATGAT GCCTACCCGACTGACGAGGAGCCTAAGCTCCTGCCTGGTGACATAGCGTG GATGCTCACCTCCACTGCTCTTGTCTTGCTCATGACTCCCGGCCTGGCCT TCTTCTACGGCGGCATGGTGCGTGCCAAGAACGTGATTTCCACCTTGCTC CAGTCGTTTATGGCCATGGGTGTTATCACGATCCTCTGGACTGTCGTCGG TTTCTCCCTGGCCTTTGGTGACTCCCTCTCGGGCTACATGGGCAACCCCG CCACCTTCCCCTTCTATAACAATGTGGGCGCAGCCGCCGATACTAACTTC TCCGCCACGATTCCCCTGGCGCTTTACTCCCTCTTTCAGCTCAAGTTTGC TATTATTACCCCTGCTTTGATTTCGGGCGCCATTGCTGAGCGTGTCCGCT TCACCTCTTACATCATCTTCATTATCCTCTTCTCCCTCTTCATCTACTGC CCTCTGGCCCACATGACCTGGCACCCGGACGGTCTCCTTGCCAAGGCCGG CATCCTGGATTTCGCCGGCGGCACCGTCGTACACATGTCCTCGGGTTACG CGGCATTGGTTGGCTCGATCATCCTGGGGCCCCGTAAGGACGTGAAGAAG ATGCAGCCCGCCAACATCCCCTTCGTCATGCTCGGAACTGCCCTCCTGTG GTTTGGATGGTTTGGTTTCAACGCCGGCTCGGCCCTTGCGGCGTCTCCGT TAGCAGTGCAGGCTTTCTTGACCACCAACACGGCTACAGCGGCTGCCATG CTTACGTGGGTTTTCGTGGACCACATCCGTGGGAGCAAGTCCACCGCCAT GGGCGCATGTGTTGGGGCTGTGGTAGGGCTCGTCGTGATCACACCCGGCG CCGGGTTCGTCACCATCGGTGGCTCGGCGTGCATGGGCATTATCGGCGCT GTGATTTCCAACGTCGTGGCCCATTACTTTAACACCAAGGCGAACATTGA TGATACGTTGGACGTGTGGCCTTGCCACGGCCTGGGCGGGACTGTTGGCA TGGTCCTCACCTCGTGCTTCTGCACCAGCACCGTTAACCCAGACTCTCCG GACGGCTTGTTCTACGGAGACCCCACCACGTTCTGGCACCATCTAGTGGC GCTTGTGTGCATCATCCCTTTCATCATGGGCATGTCCTTTGTCTGCTACC AGATCACGAACTTCATCTACCCTCTGCGTTGTGGTGAGAAATCCGAAAAG CTCGGCCTGGACATGTCGCAGCACAAGGAGACCATCATCCTTGAGGATGA GGGCATGGAGAAGCCCGTCGACGACTTGGATGCGTCCAGCCGCATTGAGC TTGGCTCCATGTAA back to top
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