NO09G03110.1, NO09G03110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03110.1
Unique NameNO09G03110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1464
Alignment locationchr9:907157..908620 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:907157..908620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G03110.1 vs.
Match: EWM27494.1 (ammonium transporter [Nannochloropsis gaditana])

HSP 1 Score: 840.9 bits (2171), Expect = 2.000e-240
Identity = 426/489 (87.12%), Postives = 455/489 (93.05%), Query Frame = 0
Query:    3 DKITKKRVITASVLSVIFALCIAMTVFDSKDG-SFIMADDDASVIAYNDAYPTDEEPKLLPGDIAWMLTSTALVLLMTPGLAFFYGGMVRAKNVISTLLQSFMAMGVITILWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAADTNFSATIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFIILFSLFIYCPLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRKDVKKMQPANIPFVMLGTALLWFGWFGFNAGSALAASPLAVQAFLTTNTATAAAMLTWVFVDHIRGSKSTAMGACVGAVVGLVVITPGAGFVTIGGSACMGIIGAVISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCFCTSTVNPDSPDGLFYGDPTTFWHHLVALVCIIPFIMGMSFVCYQITNFIYPLRCGEKSEKLGLDMSQHKETIILEDE---GMEKPVDDLDASSRIELGSM 488
            DKI K+R+IT SVLS++ AL IAMT FD+K G ++IMADDD S+I YN A PT+EEP+LLPGDIAWML +TALVLLMTPGLAFFYGGMVRAKNVISTLL SF+AMGVIT+LWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAADTNFS TIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFI+LFSLF+YCPLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRK+V KMQPANIPFVMLGTALLWFGWFGFNAGSALAA P+AVQAFLTTNTATAAAMLTWVFVDH+RGSKSTAMGACVGAVVGLVVITPGAGFVT+GG+ACMG+IGA ISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCF T + N D  DGLFYGD T FWHHLVALVC+IP+IMGMSF+CYQITN IYPLR GEKSEKLGLDMSQHKE+I++ DE    + KP DDLDASSRIELGSM
Sbjct:   56 DKIVKRRIITGSVLSLLLALSIAMTCFDAKKGGAYIMADDDPSIINYNAALPTEEEPQLLPGDIAWMLAATALVLLMTPGLAFFYGGMVRAKNVISTLLMSFVAMGVITMLWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAADTNFSNTIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFIVLFSLFVYCPLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRKNVGKMQPANIPFVMLGTALLWFGWFGFNAGSALAADPVAVQAFLTTNTATAAAMLTWVFVDHLRGSKSTAMGACVGAVVGLVVITPGAGFVTVGGAACMGMIGAFISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCFATVSANADGADGLFYGDATLFWHHLVALVCLIPYIMGMSFLCYQITNLIYPLRVGEKSEKLGLDMSQHKESIMVHDEEEDDVVKPADDLDASSRIELGSM 544          
The following BLAST results are available for this feature:
BLAST of NO09G03110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27494.12.000e-24087.12ammonium transporter [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03110NO09G03110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03110.1NO09G03110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03110.1.cds1NO09G03110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03110.1 ID=NO09G03110.1|Name=NO09G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp
ATGATCGACAAGATAACCAAGAAGCGGGTCATTACCGCCTCCGTGCTGAG
CGTCATCTTTGCCCTGTGCATCGCCATGACGGTCTTCGACAGCAAGGACG
GAAGCTTCATTATGGCGGATGACGACGCTTCCGTGATTGCCTACAATGAT
GCCTACCCGACTGACGAGGAGCCTAAGCTCCTGCCTGGTGACATAGCGTG
GATGCTCACCTCCACTGCTCTTGTCTTGCTCATGACTCCCGGCCTGGCCT
TCTTCTACGGCGGCATGGTGCGTGCCAAGAACGTGATTTCCACCTTGCTC
CAGTCGTTTATGGCCATGGGTGTTATCACGATCCTCTGGACTGTCGTCGG
TTTCTCCCTGGCCTTTGGTGACTCCCTCTCGGGCTACATGGGCAACCCCG
CCACCTTCCCCTTCTATAACAATGTGGGCGCAGCCGCCGATACTAACTTC
TCCGCCACGATTCCCCTGGCGCTTTACTCCCTCTTTCAGCTCAAGTTTGC
TATTATTACCCCTGCTTTGATTTCGGGCGCCATTGCTGAGCGTGTCCGCT
TCACCTCTTACATCATCTTCATTATCCTCTTCTCCCTCTTCATCTACTGC
CCTCTGGCCCACATGACCTGGCACCCGGACGGTCTCCTTGCCAAGGCCGG
CATCCTGGATTTCGCCGGCGGCACCGTCGTACACATGTCCTCGGGTTACG
CGGCATTGGTTGGCTCGATCATCCTGGGGCCCCGTAAGGACGTGAAGAAG
ATGCAGCCCGCCAACATCCCCTTCGTCATGCTCGGAACTGCCCTCCTGTG
GTTTGGATGGTTTGGTTTCAACGCCGGCTCGGCCCTTGCGGCGTCTCCGT
TAGCAGTGCAGGCTTTCTTGACCACCAACACGGCTACAGCGGCTGCCATG
CTTACGTGGGTTTTCGTGGACCACATCCGTGGGAGCAAGTCCACCGCCAT
GGGCGCATGTGTTGGGGCTGTGGTAGGGCTCGTCGTGATCACACCCGGCG
CCGGGTTCGTCACCATCGGTGGCTCGGCGTGCATGGGCATTATCGGCGCT
GTGATTTCCAACGTCGTGGCCCATTACTTTAACACCAAGGCGAACATTGA
TGATACGTTGGACGTGTGGCCTTGCCACGGCCTGGGCGGGACTGTTGGCA
TGGTCCTCACCTCGTGCTTCTGCACCAGCACCGTTAACCCAGACTCTCCG
GACGGCTTGTTCTACGGAGACCCCACCACGTTCTGGCACCATCTAGTGGC
GCTTGTGTGCATCATCCCTTTCATCATGGGCATGTCCTTTGTCTGCTACC
AGATCACGAACTTCATCTACCCTCTGCGTTGTGGTGAGAAATCCGAAAAG
CTCGGCCTGGACATGTCGCAGCACAAGGAGACCATCATCCTTGAGGATGA
GGGCATGGAGAAGCCCGTCGACGACTTGGATGCGTCCAGCCGCATTGAGC
TTGGCTCCATGTAA
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protein sequence of NO09G03110.1

>NO09G03110.1-protein ID=NO09G03110.1-protein|Name=NO09G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MIDKITKKRVITASVLSVIFALCIAMTVFDSKDGSFIMADDDASVIAYND
AYPTDEEPKLLPGDIAWMLTSTALVLLMTPGLAFFYGGMVRAKNVISTLL
QSFMAMGVITILWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAADTNF
SATIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFIILFSLFIYC
PLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRKDVKK
MQPANIPFVMLGTALLWFGWFGFNAGSALAASPLAVQAFLTTNTATAAAM
LTWVFVDHIRGSKSTAMGACVGAVVGLVVITPGAGFVTIGGSACMGIIGA
VISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCFCTSTVNPDSP
DGLFYGDPTTFWHHLVALVCIIPFIMGMSFVCYQITNFIYPLRCGEKSEK
LGLDMSQHKETIILEDEGMEKPVDDLDASSRIELGSM*
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mRNA from alignment at chr9:907157..908620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03110.1 ID=NO09G03110.1|Name=NO09G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp|location=Sequence derived from alignment at chr9:907157..908620+ (Nannochloropsis oceanica)
ATGATCGACAAGATAACCAAGAAGCGGGTCATTACCGCCTCCGTGCTGAG CGTCATCTTTGCCCTGTGCATCGCCATGACGGTCTTCGACAGCAAGGACG GAAGCTTCATTATGGCGGATGACGACGCTTCCGTGATTGCCTACAATGAT GCCTACCCGACTGACGAGGAGCCTAAGCTCCTGCCTGGTGACATAGCGTG GATGCTCACCTCCACTGCTCTTGTCTTGCTCATGACTCCCGGCCTGGCCT TCTTCTACGGCGGCATGGTGCGTGCCAAGAACGTGATTTCCACCTTGCTC CAGTCGTTTATGGCCATGGGTGTTATCACGATCCTCTGGACTGTCGTCGG TTTCTCCCTGGCCTTTGGTGACTCCCTCTCGGGCTACATGGGCAACCCCG CCACCTTCCCCTTCTATAACAATGTGGGCGCAGCCGCCGATACTAACTTC TCCGCCACGATTCCCCTGGCGCTTTACTCCCTCTTTCAGCTCAAGTTTGC TATTATTACCCCTGCTTTGATTTCGGGCGCCATTGCTGAGCGTGTCCGCT TCACCTCTTACATCATCTTCATTATCCTCTTCTCCCTCTTCATCTACTGC CCTCTGGCCCACATGACCTGGCACCCGGACGGTCTCCTTGCCAAGGCCGG CATCCTGGATTTCGCCGGCGGCACCGTCGTACACATGTCCTCGGGTTACG CGGCATTGGTTGGCTCGATCATCCTGGGGCCCCGTAAGGACGTGAAGAAG ATGCAGCCCGCCAACATCCCCTTCGTCATGCTCGGAACTGCCCTCCTGTG GTTTGGATGGTTTGGTTTCAACGCCGGCTCGGCCCTTGCGGCGTCTCCGT TAGCAGTGCAGGCTTTCTTGACCACCAACACGGCTACAGCGGCTGCCATG CTTACGTGGGTTTTCGTGGACCACATCCGTGGGAGCAAGTCCACCGCCAT GGGCGCATGTGTTGGGGCTGTGGTAGGGCTCGTCGTGATCACACCCGGCG CCGGGTTCGTCACCATCGGTGGCTCGGCGTGCATGGGCATTATCGGCGCT GTGATTTCCAACGTCGTGGCCCATTACTTTAACACCAAGGCGAACATTGA TGATACGTTGGACGTGTGGCCTTGCCACGGCCTGGGCGGGACTGTTGGCA TGGTCCTCACCTCGTGCTTCTGCACCAGCACCGTTAACCCAGACTCTCCG GACGGCTTGTTCTACGGAGACCCCACCACGTTCTGGCACCATCTAGTGGC GCTTGTGTGCATCATCCCTTTCATCATGGGCATGTCCTTTGTCTGCTACC AGATCACGAACTTCATCTACCCTCTGCGTTGTGGTGAGAAATCCGAAAAG CTCGGCCTGGACATGTCGCAGCACAAGGAGACCATCATCCTTGAGGATGA GGGCATGGAGAAGCCCGTCGACGACTTGGATGCGTCCAGCCGCATTGAGC TTGGCTCCATGTAA
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Coding sequence (CDS) from alignment at chr9:907157..908620+

>NO09G03110.1 ID=NO09G03110.1|Name=NO09G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr9:907157..908620+ (Nannochloropsis oceanica)
ATGATCGACAAGATAACCAAGAAGCGGGTCATTACCGCCTCCGTGCTGAG
CGTCATCTTTGCCCTGTGCATCGCCATGACGGTCTTCGACAGCAAGGACG
GAAGCTTCATTATGGCGGATGACGACGCTTCCGTGATTGCCTACAATGAT
GCCTACCCGACTGACGAGGAGCCTAAGCTCCTGCCTGGTGACATAGCGTG
GATGCTCACCTCCACTGCTCTTGTCTTGCTCATGACTCCCGGCCTGGCCT
TCTTCTACGGCGGCATGGTGCGTGCCAAGAACGTGATTTCCACCTTGCTC
CAGTCGTTTATGGCCATGGGTGTTATCACGATCCTCTGGACTGTCGTCGG
TTTCTCCCTGGCCTTTGGTGACTCCCTCTCGGGCTACATGGGCAACCCCG
CCACCTTCCCCTTCTATAACAATGTGGGCGCAGCCGCCGATACTAACTTC
TCCGCCACGATTCCCCTGGCGCTTTACTCCCTCTTTCAGCTCAAGTTTGC
TATTATTACCCCTGCTTTGATTTCGGGCGCCATTGCTGAGCGTGTCCGCT
TCACCTCTTACATCATCTTCATTATCCTCTTCTCCCTCTTCATCTACTGC
CCTCTGGCCCACATGACCTGGCACCCGGACGGTCTCCTTGCCAAGGCCGG
CATCCTGGATTTCGCCGGCGGCACCGTCGTACACATGTCCTCGGGTTACG
CGGCATTGGTTGGCTCGATCATCCTGGGGCCCCGTAAGGACGTGAAGAAG
ATGCAGCCCGCCAACATCCCCTTCGTCATGCTCGGAACTGCCCTCCTGTG
GTTTGGATGGTTTGGTTTCAACGCCGGCTCGGCCCTTGCGGCGTCTCCGT
TAGCAGTGCAGGCTTTCTTGACCACCAACACGGCTACAGCGGCTGCCATG
CTTACGTGGGTTTTCGTGGACCACATCCGTGGGAGCAAGTCCACCGCCAT
GGGCGCATGTGTTGGGGCTGTGGTAGGGCTCGTCGTGATCACACCCGGCG
CCGGGTTCGTCACCATCGGTGGCTCGGCGTGCATGGGCATTATCGGCGCT
GTGATTTCCAACGTCGTGGCCCATTACTTTAACACCAAGGCGAACATTGA
TGATACGTTGGACGTGTGGCCTTGCCACGGCCTGGGCGGGACTGTTGGCA
TGGTCCTCACCTCGTGCTTCTGCACCAGCACCGTTAACCCAGACTCTCCG
GACGGCTTGTTCTACGGAGACCCCACCACGTTCTGGCACCATCTAGTGGC
GCTTGTGTGCATCATCCCTTTCATCATGGGCATGTCCTTTGTCTGCTACC
AGATCACGAACTTCATCTACCCTCTGCGTTGTGGTGAGAAATCCGAAAAG
CTCGGCCTGGACATGTCGCAGCACAAGGAGACCATCATCCTTGAGGATGA
GGGCATGGAGAAGCCCGTCGACGACTTGGATGCGTCCAGCCGCATTGAGC
TTGGCTCCATGTAA
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Synonyms
Publications