NO09G03080.1, NO09G03080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03080.1
Unique NameNO09G03080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2729
Alignment locationchr9:898084..901177 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:898084..901177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03080.1 vs.
Match: EWM27492.1 (choline dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 341.3 bits (874), Expect = 4.200e-90
Identity = 221/404 (54.70%), Postives = 270/404 (66.83%), Query Frame = 0 
Query:    1 MKLSLALAYAVFYCCPSFPAPTHAFLLTNLASRSLKHPTPSQQKGLYSRVEYEARGPLLDEYGLPLDPSDLVEKPTVPFKDRFYDVVDKTTELVESFRGGRREQDARRIVHQRRSIAKAMAIKDKVIVSLDYVTHPGKAWKTFVADPISARQKRQNAIRAEKRAKLERSLQRYYAAKNRFYETIDAIESTSRKTFKVAKGVGSAVVGAPATVQRTVKSVKSHVQDTTEAVAKVASGVSTIVSKIGSVIKKDGPNAVGGSGGEARKGKKDGKEGRVEGEADPMKVREIWETKQQTAVRTIWQEDELVKKPAISVTSAPVPAPTADARGPATMATATDAPTAAVAAAPANPTSVTTPTD-TRLSVSQDVGEKRCSTNQRSSGSMGEGLSFRQRVDAEEKAR--SRR 402
            MKLS ALA  V +C  S       FLL+NLA RSLKHP P  QKGLYSR+EY+AR P LDE+GLPLDP+DL+EKP VP KDR Y ++D T + V++   GRRE++ RRI+ +RR+ AKAMAIKDKV++SLDYV HP KAW+TFVADP+ AR +RQ   +AEKRA+LER LQRY   KNRF++T+D +EST+R + KVAK V SAVVGAP TV RTVK VKS  Q T EAVAKV+S VS++VSKI SVI+K+   A+ G+     KGKKD +    EG+ADP+KVREIWETK+QTA+RTIW+ DELV          PV  P                     A A A+  SV+ P D    S+SQ       ST+  SS      LSFR RV+A+EK R  SRR
Sbjct:  767 MKLSPALA-VVGFCFNSINV--QGFLLSNLAGRSLKHPVP--QKGLYSRIEYDAREPRLDEFGLPLDPADLMEKPRVPLKDRVYHIIDMTNDWVDAVSRGRREEETRRIIQRRRAAAKAMAIKDKVLISLDYVFHPVKAWRTFVADPLEARHQRQLRQQAEKRARLERYLQRYNTVKNRFHDTLDLLESTTRTSVKVAKSVSSAVVGAPGTVTRTVKEVKSQAQGTAEAVAKVSSSVSSVVSKITSVIRKE-DGALAGA-----KGKKDPR-SEDEGKADPVKVREIWETKEQTAIRTIWEADELV---------TPVTPP---------------------ATAMASTVSVSEPQDENEASISQGAAPSP-STSSPSSPEPVTRLSFRARVEADEKERFGSRR 1127
The following BLAST results are available for this feature:
BLAST of NO09G03080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27492.14.200e-9054.70choline dehydrogenase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03080NO09G03080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03080.1NO09G03080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03080.1.cds1NO09G03080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03080.1.cds2NO09G03080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03080.1.cds3NO09G03080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03080.1 ID=NO09G03080.1|Name=NO09G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2729bp
TCCCAGACAAATGTATGCATAACGGCCGCTGTAAGCGTACTTTAGATTGC
AACCTCCCGAGGACAATTTATGTCGCGTGCTAACGCAGGTCGACACTGTA
CGGTGCAGAGAATCACACCAGCATGGACAGGATGCCCAGATCTCAGGCAC
TTGACAGCATCATTTCGGATCGATTACTTGCTTATTTGTTTTTTTCGCGA
GATCGACATTGACCCGGTCAAGCCATTTGATAAATGTAATTATGGTCTCC
GCATGACTGAAGGAGGGGTGGTACGTCAAATCAAGAGTGGACCCTCCGAG
GACGATGAGCGTGGCATGTCCGCAAATCTCCTCATGAAGGACACAGCCGG
CGGCACAAGAAGAAAAAGCGGACGGTAGAAGGGAGGGGGAATGGAGTGGA
GGAAGAAGGAGAGGAAAGAAGCAGATGATGGTTTTGATGAGGAAGATGAG
CATCTGCCCTACCACACGTCTCCCCAGCCCTCCCGAGTCCGCAAGGCGGA
GAAATTGAGTGGCGGTAGCCCGCTGGCTGTCCTACAATTTAATGACAGAA
GGTGTTGCAGCACACAAGAATATCAAGAACAACCCGGAGCATGTCCTCGT
TGCACCCTGCAGGGTCTTGGTTCATCTCAACGGCTGGAAGCTCGCGTCTG
CTGTCATGCCTTGTCCTCCAACGAGTATAGATTTCTTCCAGCAGTAACAG
GTGCACTTGGACTGTTGCTGCCACCCACCACACAACACGCGAGCGGCTCG
CATCACCCTTTCTATTAACATATTGCACAGGATGAAGACTAGGTTGACAA
CATGCTCCTTGCGAGTTTGTGACCGTTTTACTGGCTGTGGCTGTGCCACG
TTCTGTCGTGTTGACTAAGTGAGGGCCTACCCTTCCACCTCGTTTTCCAA
CCTACACATGCGCTCTCTGTGCATCACTCAACACTTCCACACAGGCGCGG
GCCTGTCGCAACTGCCCAATAACATCTCCTCGACAGCGTGCGCCGCTTGT
CCCAAACCTCCTCTTCGCATCCCAGACTTCACGCTAATCTCGCCCGCGAT
CCTTCTATGAAGCTAAGCCTAGCACTTGCCTACGCCGTTTTCTACTGTTG
CCCCTCCTTTCCCGCTCCTACACATGCATTCCTGCTGACTAACCTTGCCA
GCCGGAGCTTGAAACACCCTACGCCGTCCCAACAAAAGGGCTTGTATAGT
CGCGTCGAGTACGAAGCTCGGGGGCCCCTCCTCGATGAGTATGGCTTGCC
ACTTGACCCGTCTGATTTGGTGGAGAAACCCACTGTGCCCTTCAAGGATC
GCTTTTACGACGTGGTAGATAAGACGACGGAGCTTGTGGAAAGCTTCAGG
GGGGGAAGGAGGGAGCAGGACGCCCGCCGCATCGTTCACCAGCGTCGTTC
AATAGCTAAAGCCATGGCTATAAAAGACAAGGTCATCGTATCCCTAGACT
ATGTTACCCATCCAGGAAAAGCGTGGAAAACCTTCGTCGCGGATCCAATC
TCCGCCCGTCAAAAGCGCCAAAACGCAATTCGAGCCGAAAAACGCGCGAA
ACTCGAAAGGAGCCTCCAACGGTACTATGCGGCGAAGAACCGTTTTTATG
AAACAATAGATGCGATTGAATCGACCTCAAGGAAAACATTCAAGGTTGCC
AAGGGGGTGGGTTCGGCAGTGGTTGGAGCCCCAGCAACCGTGCAGAGGAC
GGTCAAGAGCGTGAAGAGTCATGTGCAGGACACAACAGAGGCAGTGGCGA
AGGTGGCGTCGGGTGTCTCCACGATTGTTTCAAAGATTGGCTCGGTCATC
AAAAAGGATGGGCCGAATGCAGTAGGTGGGTCCGGGGGGGAGGCCCGAAA
GGGGAAGAAGGACGGGAAGGAGGGACGGGTGGAGGGGGAGGCAGACCCGA
TGAAGGTCCGAGAAATTTGGGAGACGAAGCAACAGACTGCCGTGCGTACG
ATTTGGCAAGAGGACGAGTTGGTGAAGAAACCAGCGATTTCGGTTACATC
TGCTCCTGTTCCAGCCCCCACGGCGGATGCGCGAGGTCCTGCAACCATGG
CTACGGCGACCGACGCACCTACTGCCGCTGTCGCTGCTGCGCCCGCCAAT
CCCACCTCTGTGACTACTCCCACGGATACGCGTCTTTCCGTCAGTCAGGA
TGTGGGTGAGAAACGTTGCTCTACAAACCAGAGAAGCAGTGGCAGCATGG
GCGAAGGCCTCTCCTTCCGTCAGCGCGTGGACGCGGAGGAGAAGGCACGC
TCACGTCGTTAAACCTGTTATTCTCAAGTTGGGAAATACTAGAGAAAAAG
GAAGGAAAGAAAGGAGAATGTGTACAAAATAGCATTATAGCAGTGAGCGA
GAAAGAGAAAAAGAAAGTGAGAGAGAGGAGGGATGGAAGAGAGAACGGAA
GGGAATTACAAGGGCAAGGAGGACGCACTGGTTTTCATTCTTTGCAGTCA
CCTATGGGGTTTTCACACAATCGTGCATGAATTCTTGAAACTTAACATAA
CCATGCATGTGCACATAATTCTCTGTGTCTTTAACATGCGATTTTAATGT
TCCACCGGCACGAAAGAAGGGAGGGATGGACGAAGGAAAGGGAGATGGGG
AAAGGTCTTTGTGTGATAAAAGGAGAGAACTTTTTTTTTTGGAAATTTCC
CCAGCAAGCGGCGGCTTACGCGAAACTCCCAGTAGGCAGGAGTAATAAGA
ATAATCAAAATTAAAGTTTGAAGGTCACA
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protein sequence of NO09G03080.1

>NO09G03080.1-protein ID=NO09G03080.1-protein|Name=NO09G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MKLSLALAYAVFYCCPSFPAPTHAFLLTNLASRSLKHPTPSQQKGLYSRV
EYEARGPLLDEYGLPLDPSDLVEKPTVPFKDRFYDVVDKTTELVESFRGG
RREQDARRIVHQRRSIAKAMAIKDKVIVSLDYVTHPGKAWKTFVADPISA
RQKRQNAIRAEKRAKLERSLQRYYAAKNRFYETIDAIESTSRKTFKVAKG
VGSAVVGAPATVQRTVKSVKSHVQDTTEAVAKVASGVSTIVSKIGSVIKK
DGPNAVGGSGGEARKGKKDGKEGRVEGEADPMKVREIWETKQQTAVRTIW
QEDELVKKPAISVTSAPVPAPTADARGPATMATATDAPTAAVAAAPANPT
SVTTPTDTRLSVSQDVGEKRCSTNQRSSGSMGEGLSFRQRVDAEEKARSR
R*
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mRNA from alignment at chr9:898084..901177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03080.1 ID=NO09G03080.1|Name=NO09G03080.1|organism=Nannochloropsis oceanica|type=mRNA|length=3094bp|location=Sequence derived from alignment at chr9:898084..901177- (Nannochloropsis oceanica)
TCCCAGACAAATGTATGCATAACGGCCGCTGTAAGCGTACTTTAGATTGC
AACCTCCCGAGGACAATTTATGTCGCGTGCTAACGCAGGTCGACACTGTA
CGGTGCAGAGAATCACACCAGCATGGACAGGATGCCCAGATCTCAGGCAC
TTGACAGCATCATTTCGGATCGATTACTTGCTTATTTGTTTTTTTCGCGA
GATCGACATTGACCCGGTCAAGCCATTTGATAAATGTAATTATGGTCTCC
GCATGACTGAAGGAGGGGTGGTACGTCAAATCAAGAGTGGACCCTCCGAG
GACGATGAGCGTGGCATGTCCGCAAATCTCCTCATGAAGGACACAGCCGG
CGGCACAAGAAGAAAAAGCGGACGGTAGAAGGGAGGGGGAATGGAGTGGA
GGAAGAAGGAGAGGAAAGAAGCAGATGATGGTTTTGATGAGGAAGATGAG
CATCTGCCCTACCACACGTCTCCCCAGCCCTCCCGAGTCCGCAAGGCGGA
GAAATTGAGTGGCGGTAGCCCGCTGGCTGTCCTACAATTTAATGACAGAA
GGTGTTGCAGCACACAAGAATATCAAGAACAACCCGGAGCATGTCCTCGT
TGCACCCTGCAGGGTCTTGGTTCATCTCAACGGCTGGAAGCTCGCGTCTG
CTGTCATGCCTTGTCCTCCAACGAGTATAGATTTCTTCCAGCAGTAACAG
GTGCACTTGGACTGTTGCTGCCACCCACCACACAACACGCGAGCGGCTCG
CATCACCCTTTCTATTAACATATTGCACAGGATGAAGACTAGGTTGACAA
CATGCTCCTTGCGAGTTTGTGACCGTTTTACTGGCTGTGGCTGTGCCACG
TTCTGTCGTGTTGACTAAGTGAGGGCCTACCCTTCCACCTCGTTTTCCAA
CCTACACATGCGCTCTCTGTGCATCACTCAACACTTCCACACAGGCGCGG
GCCTGTCGCAACTGCCCAATAACATCTCCTCGACAGCGTGCGCCGCTTGT
CCCAAACCTCCTCTTCGCATCCCAGACTTCACGCTAATCTCGCCCGCGAT
CCTTCTATGAAGCTAAGCCTAGCACTTGCCTACGCCGTTTTCTACTGTTG
CCCCTCCTTTCCCGCTCCTACACATGCATTCCTGCTGACTAACCTTGCCA
GCCGGAGCTTGAAACACCCTACGCCGTCCCAACAAAAGGGCTTGTATAGT
CGCGTCGAGTACGAAGCTCGGGGGCCCCTCCTCGATGAGTATGGCTTGCC
ACTTGACCCGTCTGATTTGGTGGAGAAACCCACTGTGCCCTTCAAGGTAT
GAGAGAATTAATAGAAATCAGTTTGATTGAAGGATATTTGCCTCTATGTC
TACGTTATTGCCTGCATGTTGGTTGGGCAGTGGGAACGTTCGTGGCGGGA
TCAATGTGACGTTCCACTATGTATTTTCACATTTTCACATTCTTGTTCCC
CTTTTTATCACGACTACCATGACAGGATCGCTTTTACGACGTGGTAGATA
AGACGACGGAGCTTGTGGAAAGCTTCAGGGGGGGAAGGAGGGAGCAGGAC
GCCCGCCGCATCGTTCACCAGCGTCGTTCAATAGCTAAGTGAGTGAAAGA
TCATTTACTTGCGCAACTCCCTGCTTTCGCGGTCTAGAATGGGCATGAGT
ATTGTCTCTATGACCCTGTTGCGGTCTCTTTCTCTCTCTGCTCTCTCTCC
CTTTCCTCTCCCTCACAACCCTTTGCTTCCCGGTCTCCTTCCTTCCTTTC
AACCATCCTCATCCACCCTCACAGAGCCATGGCTATAAAAGACAAGGTCA
TCGTATCCCTAGACTATGTTACCCATCCAGGAAAAGCGTGGAAAACCTTC
GTCGCGGATCCAATCTCCGCCCGTCAAAAGCGCCAAAACGCAATTCGAGC
CGAAAAACGCGCGAAACTCGAAAGGAGCCTCCAACGGTACTATGCGGCGA
AGAACCGTTTTTATGAAACAATAGATGCGATTGAATCGACCTCAAGGAAA
ACATTCAAGGTTGCCAAGGGGGTGGGTTCGGCAGTGGTTGGAGCCCCAGC
AACCGTGCAGAGGACGGTCAAGAGCGTGAAGAGTCATGTGCAGGACACAA
CAGAGGCAGTGGCGAAGGTGGCGTCGGGTGTCTCCACGATTGTTTCAAAG
ATTGGCTCGGTCATCAAAAAGGATGGGCCGAATGCAGTAGGTGGGTCCGG
GGGGGAGGCCCGAAAGGGGAAGAAGGACGGGAAGGAGGGACGGGTGGAGG
GGGAGGCAGACCCGATGAAGGTCCGAGAAATTTGGGAGACGAAGCAACAG
ACTGCCGTGCGTACGATTTGGCAAGAGGACGAGTTGGTGAAGAAACCAGC
GATTTCGGTTACATCTGCTCCTGTTCCAGCCCCCACGGCGGATGCGCGAG
GTCCTGCAACCATGGCTACGGCGACCGACGCACCTACTGCCGCTGTCGCT
GCTGCGCCCGCCAATCCCACCTCTGTGACTACTCCCACGGATACGCGTCT
TTCCGTCAGTCAGGATGTGGGTGAGAAACGTTGCTCTACAAACCAGAGAA
GCAGTGGCAGCATGGGCGAAGGCCTCTCCTTCCGTCAGCGCGTGGACGCG
GAGGAGAAGGCACGCTCACGTCGTTAAACCTGTTATTCTCAAGTTGGGAA
ATACTAGAGAAAAAGGAAGGAAAGAAAGGAGAATGTGTACAAAATAGCAT
TATAGCAGTGAGCGAGAAAGAGAAAAAGAAAGTGAGAGAGAGGAGGGATG
GAAGAGAGAACGGAAGGGAATTACAAGGGCAAGGAGGACGCACTGGTTTT
CATTCTTTGCAGTCACCTATGGGGTTTTCACACAATCGTGCATGAATTCT
TGAAACTTAACATAACCATGCATGTGCACATAATTCTCTGTGTCTTTAAC
ATGCGATTTTAATGTTCCACCGGCACGAAAGAAGGGAGGGATGGACGAAG
GAAAGGGAGATGGGGAAAGGTCTTTGTGTGATAAAAGGAGAGAACTTTTT
TTTTTGGAAATTTCCCCAGCAAGCGGCGGCTTACGCGAAACTCCCAGTAG
GCAGGAGTAATAAGAATAATCAAAATTAAAGTTTGAAGGTCACA
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Coding sequence (CDS) from alignment at chr9:898084..901177-

>NO09G03080.1 ID=NO09G03080.1|Name=NO09G03080.1|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr9:898084..901177- (Nannochloropsis oceanica)
ATGAAGCTAAGCCTAGCACTTGCCTACGCCGTTTTCTACTGTTGCCCCTC
CTTTCCCGCTCCTACACATGCATTCCTGCTGACTAACCTTGCCAGCCGGA
GCTTGAAACACCCTACGCCGTCCCAACAAAAGGGCTTGTATAGTCGCGTC
GAGTACGAAGCTCGGGGGCCCCTCCTCGATGAGTATGGCTTGCCACTTGA
CCCGTCTGATTTGGTGGAGAAACCCACTGTGCCCTTCAAGGATCGCTTTT
ACGACGTGGTAGATAAGACGACGGAGCTTGTGGAAAGCTTCAGGGGGGGA
AGGAGGGAGCAGGACGCCCGCCGCATCGTTCACCAGCGTCGTTCAATAGC
TAAAGCCATGGCTATAAAAGACAAGGTCATCGTATCCCTAGACTATGTTA
CCCATCCAGGAAAAGCGTGGAAAACCTTCGTCGCGGATCCAATCTCCGCC
CGTCAAAAGCGCCAAAACGCAATTCGAGCCGAAAAACGCGCGAAACTCGA
AAGGAGCCTCCAACGGTACTATGCGGCGAAGAACCGTTTTTATGAAACAA
TAGATGCGATTGAATCGACCTCAAGGAAAACATTCAAGGTTGCCAAGGGG
GTGGGTTCGGCAGTGGTTGGAGCCCCAGCAACCGTGCAGAGGACGGTCAA
GAGCGTGAAGAGTCATGTGCAGGACACAACAGAGGCAGTGGCGAAGGTGG
CGTCGGGTGTCTCCACGATTGTTTCAAAGATTGGCTCGGTCATCAAAAAG
GATGGGCCGAATGCAGTAGGTGGGTCCGGGGGGGAGGCCCGAAAGGGGAA
GAAGGACGGGAAGGAGGGACGGGTGGAGGGGGAGGCAGACCCGATGAAGG
TCCGAGAAATTTGGGAGACGAAGCAACAGACTGCCGTGCGTACGATTTGG
CAAGAGGACGAGTTGGTGAAGAAACCAGCGATTTCGGTTACATCTGCTCC
TGTTCCAGCCCCCACGGCGGATGCGCGAGGTCCTGCAACCATGGCTACGG
CGACCGACGCACCTACTGCCGCTGTCGCTGCTGCGCCCGCCAATCCCACC
TCTGTGACTACTCCCACGGATACGCGTCTTTCCGTCAGTCAGGATGTGGG
TGAGAAACGTTGCTCTACAAACCAGAGAAGCAGTGGCAGCATGGGCGAAG
GCCTCTCCTTCCGTCAGCGCGTGGACGCGGAGGAGAAGGCACGCTCACGT
CGTTAA
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Synonyms
Publications