NO09G03070.1, NO09G03070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03070.1
Unique NameNO09G03070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1590
Alignment locationchr9:895913..897608 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:895913..897608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO09G03070.1 vs.
Match: EWM27505.1 (u3 small nucleolar rna-associated protein 15 [Nannochloropsis gaditana])

HSP 1 Score: 496.9 bits (1278), Expect = 7.800e-137
Identity = 309/582 (53.09%), Postives = 365/582 (62.71%), Query Frame = 0 
Query:    1 MADYKKVRHRQRPRPVERPKPDGNFWAKFIK-------------------PTDL-------------------------SFPGAVYALDFHPLAPHDALVTASARLSLVSISRGAPKVS-------KTFSRLNGLAYSGVFRPTDGRLIACGDDGGVVTVFDVATKASLRQFTTAANHRGTTGAAARVVRWRRDGLALFSGSDDKCVRYWDL-GTGQLLTTIPQAHGDYVRCGATNPAAASE--IPVEACVVLPGGSLLVSAGTDTIKIWDLLGGGGEGNSPL-HSFSNHAKTITSLTIDREGSRLLSSSLDGHVKVYDLQTYDVLHSLRFSGPLLSVGLSPNKGKLMVGKADGCLSIRTRRAATSTTSSSLPSSSSGL----FPKTSTNPLLFGGTTKYFQRGKNAVASTGDFEVELAKRHRLAPYDVALKGFKYHEALDRALESRNPRTIVAVLDELVMRRGLKISLTGRDEAGLEPLLAFLARYLNHPDFALSLGEACHFVLDMYAPMVGQSAVLDELMGRVARGVKAEVGVQREMLELLGAMEMVMATQIEGGGGGGGGRGGGCGVVRGGWKGGEGGE 524
            MADYKKVRHRQRPRPVERPKPDGNFW+KFIK                   P D                           F G  Y+  F P      L+       +V++   A K S        T     G A   V    DG  +  G D   V  +D+ T   L     A       GA    +          SGS D  ++ WD+ G G          G     G+  P +      PVEAC+ LPGGSLLVSAG +TIK+WDLLGGGG  +  L H+FSNHAKTITSLT DREGSRLLS+SLDGHVKVYDLQTYDVLHS R +GPLLSVGL+P+ GKL++G+ADG  S+RTRR+A ++TS++  SSSSGL     P+T   PLLFGGT ++F RGKNAVA  GDF+VELAKR RLAPYD++LKGF+YHEALD+AL SRNPRTIVAVLDEL+MRRGL+++LTGRDEAG+EPLLAFLARYLNHPD+A SL + CH VLD+YAPM+GQS VLDEL+GRVARGVKAEV VQREML L+GAM+M++ATQ+E   G GG          GGW GG   E
Sbjct:    1 MADYKKVRHRQRPRPVERPKPDGNFWSKFIKPTDLSFPGAVYAVDFNPLSPYDALVTASARLSLVSLSRGSPKVSKTFSRFNGLAYSGVFRPT--DGKLIACGDDNGVVTVFDMATKASLRQFTTAATHRGTTGAAARIVRWRKDGLALFSGSDDKCVRYWDLGTAQLLTTIPQAHKDYVRCGA----INPAAASELFVSGSYDHTLKVWDMRGRG--------GGGG----GSNRPVSRFNHGCPVEACLALPGGSLLVSAGGETIKVWDLLGGGGGAHGGLLHAFSNHAKTITSLTTDREGSRLLSASLDGHVKVYDLQTYDVLHSFRAAGPLLSVGLAPDNGKLVMGQADGTFSVRTRRSALTSTSAAPISSSSGLPSSELPRT---PLLFGGTARHFHRGKNAVAGAGDFQVELAKRQRLAPYDISLKGFRYHEALDKALASRNPRTIVAVLDELIMRRGLRVALTGRDEAGMEPLLAFLARYLNHPDYASSLSDVCHMVLDIYAPMLGQSPVLDELIGRVARGVKAEVAVQREMLGLVGAMDMLIATQLEASVGEGGR--------DGGWPGGNEEE 553
The following BLAST results are available for this feature:
BLAST of NO09G03070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27505.17.800e-13753.09u3 small nucleolar rna-associated protein 15 [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03070NO09G03070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03070.1NO09G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03070.1.cds1NO09G03070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03070.1.cds2NO09G03070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03070.1 ID=NO09G03070.1|Name=NO09G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1590bp
ATGGCAGACTACAAAAAAGTACGCCATCGGCAACGGCCTCGACCGGTAGA
GCGCCCCAAACCGGACGGCAACTTCTGGGCCAAGTTTATCAAGCCCACCG
ACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGATTTTCACCCTCTGGCC
CCGCATGATGCCCTCGTCACAGCCTCGGCACGATTGTCCTTAGTCTCAAT
CAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTTTCCCGGCTGAATGGTT
TGGCGTACTCCGGAGTCTTCCGTCCAACCGACGGGCGGCTCATAGCGTGT
GGAGACGATGGGGGCGTCGTCACTGTCTTTGACGTGGCCACCAAGGCCTC
CCTCCGTCAATTTACCACCGCAGCCAATCACCGTGGTACCACAGGCGCAG
CTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCTGGCATTGTTTTCGGGG
TCGGATGATAAGTGCGTGCGGTATTGGGACTTGGGGACAGGCCAGCTCTT
GACCACAATCCCACAAGCCCATGGGGACTACGTCCGTTGCGGTGCCACTA
ACCCTGCAGCAGCCTCGGAGATTCCTGTGGAGGCCTGCGTGGTGCTACCA
GGGGGCTCCTTGCTCGTCTCCGCCGGAACAGACACTATCAAAATATGGGA
TTTGCTCGGCGGCGGTGGAGAAGGCAATAGTCCTCTGCATTCTTTCTCAA
ATCACGCCAAGACCATCACTAGCCTTACAATCGATCGAGAGGGCTCTCGC
CTGCTGTCCTCCTCACTAGATGGGCACGTCAAAGTGTACGACCTTCAGAC
GTACGATGTCCTCCACTCTCTCCGGTTCTCCGGACCCCTCCTCAGCGTCG
GTCTCTCCCCCAACAAGGGCAAGCTCATGGTCGGGAAAGCTGATGGATGC
CTCTCCATTCGCACCCGCCGCGCCGCCACCAGCACGACCTCGTCCTCCCT
CCCTTCCTCGTCCTCTGGTCTTTTCCCCAAAACCAGCACTAATCCCCTGC
TTTTCGGTGGTACGACCAAATATTTCCAACGAGGAAAAAATGCTGTTGCG
TCCACGGGGGATTTTGAGGTGGAGCTGGCGAAGCGTCATCGACTCGCGCC
TTACGACGTAGCCTTGAAGGGATTCAAGTACCATGAGGCTCTGGATAGAG
CGCTGGAAAGTCGGAATCCGCGTACGATCGTCGCTGTTCTCGACGAGCTG
GTGATGCGGAGGGGATTGAAGATTTCGCTTACCGGGAGGGATGAAGCGGG
CCTGGAGCCGTTACTGGCTTTCTTGGCACGATATTTGAATCATCCTGATT
TTGCGCTGTCCCTTGGAGAGGCCTGCCATTTTGTACTAGACATGTACGCA
CCTATGGTGGGGCAGTCTGCGGTGCTTGACGAGCTAATGGGGAGGGTGGC
CCGGGGGGTTAAGGCTGAAGTTGGAGTGCAGAGGGAGATGCTGGAGTTGC
TGGGAGCGATGGAGATGGTGATGGCGACCCAGATCGAGGGGGGGGGGGGG
GGGGGGGGAGGGAGGGGGGGGGGATGTGGAGTTGTTAGAGGGGGATGGAA
AGGAGGAGAAGGAGGAGAAGGAGGGGGAGGAGGCCAGTGA
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protein sequence of NO09G03070.1

>NO09G03070.1-protein ID=NO09G03070.1-protein|Name=NO09G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MADYKKVRHRQRPRPVERPKPDGNFWAKFIKPTDLSFPGAVYALDFHPLA
PHDALVTASARLSLVSISRGAPKVSKTFSRLNGLAYSGVFRPTDGRLIAC
GDDGGVVTVFDVATKASLRQFTTAANHRGTTGAAARVVRWRRDGLALFSG
SDDKCVRYWDLGTGQLLTTIPQAHGDYVRCGATNPAAASEIPVEACVVLP
GGSLLVSAGTDTIKIWDLLGGGGEGNSPLHSFSNHAKTITSLTIDREGSR
LLSSSLDGHVKVYDLQTYDVLHSLRFSGPLLSVGLSPNKGKLMVGKADGC
LSIRTRRAATSTTSSSLPSSSSGLFPKTSTNPLLFGGTTKYFQRGKNAVA
STGDFEVELAKRHRLAPYDVALKGFKYHEALDRALESRNPRTIVAVLDEL
VMRRGLKISLTGRDEAGLEPLLAFLARYLNHPDFALSLGEACHFVLDMYA
PMVGQSAVLDELMGRVARGVKAEVGVQREMLELLGAMEMVMATQIEGGGG
GGGGRGGGCGVVRGGWKGGEGGEGGGGGQ*
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mRNA from alignment at chr9:895913..897608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03070.1 ID=NO09G03070.1|Name=NO09G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1696bp|location=Sequence derived from alignment at chr9:895913..897608- (Nannochloropsis oceanica)
ATGGCAGACTACAAAAAAGTACGCCATCGGCAACGGCCTCGACCGGTAGA
GCGCCCCAAACCGGACGGCAACTTCTGGGCCAAGTTTATCAAGCCCACCG
ACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGATTTTCACCCTCTGGCC
CCGCATGATGCCCTCGTCACAGCCTCGGCACGATTGTCCTTAGTCTCAAT
CAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTTTCCCGGCTGAATGGTT
TGGCGTACTCCGGAGTCTTCCGTCCAACCGACGGGCGGCTCATAGCGTGT
GGAGACGATGGGGGCGTCGTCACTGTCTTTGACGTGGCCACCAAGGCCTC
CCTCCGTCAATTTACCACCGCAGCCAATCACCGTGGTACCACAGGCGCAG
CTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCTGGCATTGTTTTCGGGG
TCGGATGATAAGTGCGTGCGGTATTGGGACTTGGGGACAGGCCAGCTCTT
GACCACAATCCCACAAGCCCATGGGGACTACGTCCGTTGCGGTGCCACTA
ACCCTGCAGCAGCCTCGGAGATGTTCGTGTCAGGCTCGTATGACCACACA
TTGAAACTATGGGACATGCGAGGGAGGGGGGAGGGGGGGAGGGAGCAATC
GGCCAGTTGCTAGCTTTGACCACGGCAGTCCTGTGGAGGCCTGCGTGGTG
CTACCAGGGGGCTCCTTGCTCGTCTCCGCCGGAACAGACACTATCAAAAT
ATGGGATTTGCTCGGCGGCGGTGGAGAAGGCAATAGTCCTCTGCATTCTT
TCTCAAATCACGCCAAGACCATCACTAGCCTTACAATCGATCGAGAGGGC
TCTCGCCTGCTGTCCTCCTCACTAGATGGGCACGTCAAAGTGTACGACCT
TCAGACGTACGATGTCCTCCACTCTCTCCGGTTCTCCGGACCCCTCCTCA
GCGTCGGTCTCTCCCCCAACAAGGGCAAGCTCATGGTCGGGAAAGCTGAT
GGATGCCTCTCCATTCGCACCCGCCGCGCCGCCACCAGCACGACCTCGTC
CTCCCTCCCTTCCTCGTCCTCTGGTCTTTTCCCCAAAACCAGCACTAATC
CCCTGCTTTTCGGTGGTACGACCAAATATTTCCAACGAGGAAAAAATGCT
GTTGCGTCCACGGGGGATTTTGAGGTGGAGCTGGCGAAGCGTCATCGACT
CGCGCCTTACGACGTAGCCTTGAAGGGATTCAAGTACCATGAGGCTCTGG
ATAGAGCGCTGGAAAGTCGGAATCCGCGTACGATCGTCGCTGTTCTCGAC
GAGCTGGTGATGCGGAGGGGATTGAAGATTTCGCTTACCGGGAGGGATGA
AGCGGGCCTGGAGCCGTTACTGGCTTTCTTGGCACGATATTTGAATCATC
CTGATTTTGCGCTGTCCCTTGGAGAGGCCTGCCATTTTGTACTAGACATG
TACGCACCTATGGTGGGGCAGTCTGCGGTGCTTGACGAGCTAATGGGGAG
GGTGGCCCGGGGGGTTAAGGCTGAAGTTGGAGTGCAGAGGGAGATGCTGG
AGTTGCTGGGAGCGATGGAGATGGTGATGGCGACCCAGATCGAGGGGGGG
GGGGGGGGGGGGGGAGGGAGGGGGGGGGGATGTGGAGTTGTTAGAGGGGG
ATGGAAAGGAGGAGAAGGAGGAGAAGGAGGGGGAGGAGGCCAGTGA
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Coding sequence (CDS) from alignment at chr9:895913..897608-

>NO09G03070.1 ID=NO09G03070.1|Name=NO09G03070.1|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at chr9:895913..897608- (Nannochloropsis oceanica)
ATGGCAGACTACAAAAAAGTACGCCATCGGCAACGGCCTCGACCGGTAGA
GCGCCCCAAACCGGACGGCAACTTCTGGGCCAAGTTTATCAAGCCCACCG
ACCTCTCCTTCCCCGGCGCCGTCTACGCCTTGGATTTTCACCCTCTGGCC
CCGCATGATGCCCTCGTCACAGCCTCGGCACGATTGTCCTTAGTCTCAAT
CAGTCGTGGTGCACCCAAAGTCAGCAAGACGTTTTCCCGGCTGAATGGTT
TGGCGTACTCCGGAGTCTTCCGTCCAACCGACGGGCGGCTCATAGCGTGT
GGAGACGATGGGGGCGTCGTCACTGTCTTTGACGTGGCCACCAAGGCCTC
CCTCCGTCAATTTACCACCGCAGCCAATCACCGTGGTACCACAGGCGCAG
CTGCTCGTGTTGTGCGCTGGCGAAGGGATGGCCTGGCATTGTTTTCGGGG
TCGGATGATAAGTGCGTGCGGTATTGGGACTTGGGGACAGGCCAGCTCTT
GACCACAATCCCACAAGCCCATGGGGACTACGTCCGTTGCGGTGCCACTA
ACCCTGCAGCAGCCTCGGAGATTCCTGTGGAGGCCTGCGTGGTGCTACCA
GGGGGCTCCTTGCTCGTCTCCGCCGGAACAGACACTATCAAAATATGGGA
TTTGCTCGGCGGCGGTGGAGAAGGCAATAGTCCTCTGCATTCTTTCTCAA
ATCACGCCAAGACCATCACTAGCCTTACAATCGATCGAGAGGGCTCTCGC
CTGCTGTCCTCCTCACTAGATGGGCACGTCAAAGTGTACGACCTTCAGAC
GTACGATGTCCTCCACTCTCTCCGGTTCTCCGGACCCCTCCTCAGCGTCG
GTCTCTCCCCCAACAAGGGCAAGCTCATGGTCGGGAAAGCTGATGGATGC
CTCTCCATTCGCACCCGCCGCGCCGCCACCAGCACGACCTCGTCCTCCCT
CCCTTCCTCGTCCTCTGGTCTTTTCCCCAAAACCAGCACTAATCCCCTGC
TTTTCGGTGGTACGACCAAATATTTCCAACGAGGAAAAAATGCTGTTGCG
TCCACGGGGGATTTTGAGGTGGAGCTGGCGAAGCGTCATCGACTCGCGCC
TTACGACGTAGCCTTGAAGGGATTCAAGTACCATGAGGCTCTGGATAGAG
CGCTGGAAAGTCGGAATCCGCGTACGATCGTCGCTGTTCTCGACGAGCTG
GTGATGCGGAGGGGATTGAAGATTTCGCTTACCGGGAGGGATGAAGCGGG
CCTGGAGCCGTTACTGGCTTTCTTGGCACGATATTTGAATCATCCTGATT
TTGCGCTGTCCCTTGGAGAGGCCTGCCATTTTGTACTAGACATGTACGCA
CCTATGGTGGGGCAGTCTGCGGTGCTTGACGAGCTAATGGGGAGGGTGGC
CCGGGGGGTTAAGGCTGAAGTTGGAGTGCAGAGGGAGATGCTGGAGTTGC
TGGGAGCGATGGAGATGGTGATGGCGACCCAGATCGAGGGGGGGGGGGGG
GGGGGGGGAGGGAGGGGGGGGGGATGTGGAGTTGTTAGAGGGGGATGGAA
AGGAGGAGAAGGAGGAGAAGGAGGGGGAGGAGGCCAGTGA
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Synonyms
Publications