NO09G03020.1, NO09G03020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G03020.1
Unique NameNO09G03020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2964
Alignment locationchr9:881432..884588 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:881432..884588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G03020.1 vs.
Match: XP_005852691.1 (gdsl lipase acylhydrolase family protein [Nannochloropsis gaditana CCMP526]; EKU23139.1 gdsl lipase acylhydrolase family protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 484.2 bits (1245), Expect = 3.400e-133
Identity = 235/340 (69.12%), Postives = 282/340 (82.94%), Query Frame = 0
Query:    1 MATLSTRATGTSIPISATYVSVRRSSLLFLTLGSFAMGTVLANMGTRSWRRIQRYMESRRSNGGRRPVIVCFGDSITQGGHSPEYVGWMGRLEDFYGRKADVLNRGFSGYNTDWLCRMLNDLFLRLFRRRPPALVTIWVGANDATVESSTQHVPLWKFKQNLEKMVRFFRRLGRRDRKVAVLLITPPPLHEADWLASLRSSTPSALPDRSFARTYAYAQAVKEVGQTLRTPVVDMHAALEGGQDEDRGEEGVPPPGEAYRGYLSDGLHLNFKGNKKAFEAIIEGIKNNFPWLDPINLEMQGPAWETLRSAYLDEAEGGVEGGGECAITLYSSKSSIILNS 341
            MA+  +  +  ++P   +Y+S+RRSSLL +TLGSFA+GT++ANM +RSWRR+QRY++SRRSNGGRRPVIVCFGDSITQGGHSPE+VGW+GRLEDFY RKADVLNRGFSGYNTDWL RML DLF R+FRRRPP LVTIW+GANDATVESS QHVPLWK+K+NLEKMVRFF+ LGRRDR+VA+LL+TPPPLHE  WLA LRSS P++L DRSFART +YA A +EVGQ ++ PVVD+HA+     +E  G EG+P   E Y  +LSDGLHLN KGN++AFEA+ + IK++FPWLDPINLE Q P WE+LRS YLDEAEG  E G    + LYSSKSS+I N+
Sbjct:    1 MASSMSSRSAIAVP-PTSYISIRRSSLLLITLGSFALGTLIANMTSRSWRRVQRYIDSRRSNGGRRPVIVCFGDSITQGGHSPEHVGWVGRLEDFYCRKADVLNRGFSGYNTDWLSRMLVDLFSRMFRRRPPVLVTIWLGANDATVESSRQHVPLWKYKENLEKMVRFFKGLGRRDRQVAILLVTPPPLHEGKWLAFLRSSCPTSLLDRSFARTASYALAAREVGQAIKVPVVDIHASFGVQIEEAVGGEGMPQD-ETYASFLSDGLHLNEKGNRRAFEAVRDSIKHHFPWLDPINLETQAPGWESLRSLYLDEAEGRGEKGEGGTVPLYSSKSSVIFNA 338          
The following BLAST results are available for this feature:
BLAST of NO09G03020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852691.13.400e-13369.12gdsl lipase acylhydrolase family protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G03020NO09G03020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G03020.1NO09G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G03020.1.cds1NO09G03020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G03020.1.cds2NO09G03020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G03020.1 ID=NO09G03020.1|Name=NO09G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2964bp
AATTCGGTGGTCCCACGTAACGCTCCAGATTAAGGAGGAACGCGGCATTC
TTCTAGCTTACGTCATACGCTATGATTCAAAATTTCCGTTGTATTTAGGA
CTAAATTGAACTTTCACTATCTTGTCAGGCAACCCTGGTTCAAGGCACAA
GACACAAAGATCACTTCTATGTATTTCAGGGTCTGGAATACAGTTTTGAG
ATTGAGTAAAGGAATGGATCGGGAACCAATCATGCAATTGTCTTTTTGAA
CACCGTTGCAAATCCACGCGACACTGCATTTGCTGCAGGGAGAGATGTTT
ATATGGTGCTTCAAAATTGGTAGTTCTCCGGCAGGCCACCCTGGGGCTCC
ACGGGAAAATCTGTGGTTCTCAGACACCAGCCCGCGCACACCTTGAGGCC
GTCAATTCCCGCCCCCTATCGCATCGATTTCAGGGCCGCCAATGGGGTAA
GCAGGGCGATTGATGCATGTTCATATTCACTTGGGGATTTTGGCAACCAC
GATCGGAAGAAAAGGGCCAATCGATTCCGAGTCCGAAAATGCAATCGCCA
GCGTTTTGGACGCCTCTTCCCATTAGCACGTACATTGACGTACGTATGTC
AACTAGCAGTGATGGTATTCTAGGCCACTGTCTCCGCTTGCCACTCCTCC
ACCGTCTCCGCCTGCTACACCTTTGACCTTCGTGCCCATTCTCCGGTCGC
GCCGCCCGCCTGCTGCTGCAGCTGGACATGCCCCTGCCAAGGGAAGATAA
TCGGGCGCCGCACCGCGTAGAAGATGAACCCGCCCATGCCAACAGACTTA
TGCTCCCGCGACGGTTCGTCGAGCATGCCGCCTTTCTGCGGCAGGATAAC
TTCCTCAACAAATCCTACTGTTCTCGGTGCTCATTATGCCCACTTTCTCC
AGCTCCAGCTCCCCCAGTTTCACATCGGGAACCAGAAGCGGGGCAACGCA
GTCGAAGGCCTGGTTAAAAGACAAATACAAGTCCACGCGCCACCTGCTAG
CTCTCCCCTCCCTCATCTTGTAATAACCCCCTGCTCCCTCCTCCGCGGCT
CATCACCGCGCAAGTAAACGCCGGGTTCGCTGCAGCGCCCATATGTGAGC
TCACTTGTATCCTGTACGTTGGTAAATGCAGCCGAGATTTGTTAATGGGC
GTGTGATTTTAGTGGGAACTTCCGCAAAAGGACATAAGACGCGTTTTTTT
CCCCCGCGCGTGCATTGTTCGTCGGTCGTCGCCTAACACATTTGTTTTAT
CTTTTCAATGAACTTCTGCGGGCCTAAACGACAGTCTTCATGTCATCAAA
GTATCTTTTTTCGGAAAATCTCCCCCTACCGCACCCGAAACCTTGGCGTA
ACTTGGGACCGAAGCCCATCTCACTGTGTTCGTTGGGGGGAGGTTCAGAC
CACGCAGCCTGAGTAGTCTCATGTCAAGCGCTTGTGAATGAAGACTGCCA
GCACATGATACTTTCTATCTATGCGCTCCTACTTCATACTTCTGACTGCT
GTGGATCTTTAACTGCCCTCGCACAGCCCTCCGCACTGAATTGCCCACAG
GCCTTTGTCAACGTACTATATAACGGACGACGATCTTTCCTTCTACATAG
GTGTCCCCTGGCAAGTGACCGTCACCCTGACCCTGCATCTGACACCATCG
CACCACTCCGTTCTCATAGGCAAGCAGGCACCTGGATTTTCACCACACGC
ATCCCAGCCATTTGCAGCTCTGCCTTCGCACACCACAGCCGACAACAGTC
GTCCTGAACTTTTGAACTCTCTTGTCTTTCAGAACATTGCCCGACCCTTC
GAACTTGAGAAAGGTAGAGAAAGCACCCCATTTACACCACTACTACCACG
ACGAATATGGCAACTCTCAGCACCCGGGCCACTGGCACCAGCATCCCCAT
TTCTGCCACCTACGTCTCGGTCCGTCGCTCTTCCCTCTTGTTCCTCACCC
TCGGGTCATTTGCCATGGGGACAGTCCTCGCCAACATGGGCACGCGATCT
TGGCGGCGTATTCAACGCTACATGGAGTCACGTCGTAGTAACGGGGGGCG
ACGACCCGTGATTGTCTGCTTTGGAGACAGTATCACGCAAGGGGGACACA
GCCCAGAATATGTCGGGTGGATGGGGCGTTTGGAAGACTTCTATGGTAGA
AAAGCAGATGTGCTTAATCGTGGCTTTTCTGGATACAACACTGATTGGCT
CTGCCGGATGTTGAATGATTTGTTTTTGCGATTATTTAGACGGCGACCAC
CGGCCTTGGTGACGATCTGGGTGGGTGCGAATGACGCGACAGTTGAGAGC
TCGACGCAGCACGTGCCCTTGTGGAAGTTTAAGCAGAATTTGGAGAAAAT
GGTCCGTTTTTTCCGAAGGCTAGGACGCAGGGATCGAAAGGTGGCCGTTC
TCCTCATTACCCCCCCTCCCCTCCACGAAGCAGATTGGCTCGCCTCGCTG
CGTTCCTCCACTCCCTCCGCCCTTCCTGACCGCTCATTCGCCCGCACCTA
TGCATATGCCCAAGCCGTCAAAGAAGTAGGACAAACGCTGAGAACACCCG
TCGTGGATATGCACGCGGCTCTTGAAGGAGGGCAAGACGAGGACAGGGGG
GAGGAGGGGGTGCCCCCTCCGGGCGAAGCTTACAGAGGCTACCTTTCTGA
TGGTCTCCATTTGAATTTCAAGGGAAACAAAAAGGCCTTCGAGGCCATAA
TAGAGGGCATCAAGAATAATTTCCCTTGGCTCGATCCGATTAATCTGGAG
ATGCAGGGGCCAGCATGGGAGACGTTGAGGTCAGCTTATTTGGATGAAGC
GGAGGGCGGGGTCGAGGGAGGGGGGGAGTGCGCTATAACCTTGTATAGCT
CCAAGAGTAGCATCATCTTGAATTCGGATTAGAAAGTAGGGAGGGAGAAA
GGATGGAGGGACACTGAAGGAGGGAGGGGGGAAGAAAAAAAAATCGTGGT
ATGGGTATGGAAGA
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protein sequence of NO09G03020.1

>NO09G03020.1-protein ID=NO09G03020.1-protein|Name=NO09G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MATLSTRATGTSIPISATYVSVRRSSLLFLTLGSFAMGTVLANMGTRSWR
RIQRYMESRRSNGGRRPVIVCFGDSITQGGHSPEYVGWMGRLEDFYGRKA
DVLNRGFSGYNTDWLCRMLNDLFLRLFRRRPPALVTIWVGANDATVESST
QHVPLWKFKQNLEKMVRFFRRLGRRDRKVAVLLITPPPLHEADWLASLRS
STPSALPDRSFARTYAYAQAVKEVGQTLRTPVVDMHAALEGGQDEDRGEE
GVPPPGEAYRGYLSDGLHLNFKGNKKAFEAIIEGIKNNFPWLDPINLEMQ
GPAWETLRSAYLDEAEGGVEGGGECAITLYSSKSSIILNSD*
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mRNA from alignment at chr9:881432..884588+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G03020.1 ID=NO09G03020.1|Name=NO09G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=3157bp|location=Sequence derived from alignment at chr9:881432..884588+ (Nannochloropsis oceanica)
AATTCGGTGGTCCCACGTAACGCTCCAGATTAAGGAGGAACGCGGCATTC TTCTAGCTTACGTCATACGCTATGATTCAAAATTTCCGTTGTATTTAGGA CTAAATTGAACTTTCACTATCTTGTCAGGCAACCCTGGTTCAAGGCACAA GACACAAAGATCACTTCTATGTATTTCAGGGTCTGGAATACAGTTTTGAG ATTGAGTAAAGGAATGGATCGGGAACCAATCATGCAATTGTCTTTTTGAA CACCGTTGCAAATCCACGCGACACTGCATTTGCTGCAGGGAGAGATGTTT ATATGGTGCTTCAAAATTGGTAGTTCTCCGGCAGGCCACCCTGGGGCTCC ACGGGAAAATCTGTGGTTCTCAGACACCAGCCCGCGCACACCTTGAGGCC GTCAATTCCCGCCCCCTATCGCATCGATTTCAGGGCCGCCAATGGGGTAA GCAGGGCGATTGATGCATGTTCATATTCACTTGGGGATTTTGGCAACCAC GATCGGAAGAAAAGGGCCAATCGATTCCGAGTCCGAAAATGCAATCGCCA GCGTTTTGGACGCCTCTTCCCATTAGCACGTACATTGACGTACGTATGTC AACTAGCAGTGATGGTATTCTAGGCCACTGTCTCCGCTTGCCACTCCTCC ACCGTCTCCGCCTGCTACACCTTTGACCTTCGTGCCCATTCTCCGGTCGC GCCGCCCGCCTGCTGCTGCAGCTGGACATGCCCCTGCCAAGGGAAGATAA TCGGGCGCCGCACCGCGTAGAAGATGAACCCGCCCATGCCAACAGACTTA TGCTCCCGCGACGGTTCGTCGAGCATGCCGCCTTTCTGCGGCAGGATAAC TTCCTCAACAAATCCTACTGTTCTCGGTGCTCATTATGCCCACTTTCTCC AGCTCCAGCTCCCCCAGTTTCACATCGGGAACCAGAAGCGGGGCAACGCA GTCGAAGGCCTGGTTAAAAGACAAATACAAGTCCACGCGCCACCTGCTAG CTCTCCCCTCCCTCATCTTGTAATAACCCCCTGCTCCCTCCTCCGCGGCT CATCACCGCGCAAGTAAACGCCGGGTTCGCTGCAGCGCCCATATGTGAGC TCACTTGTATCCTGTACGTTGGTAAATGCAGCCGAGATTTGTTAATGGGC GTGTGATTTTAGTGGGAACTTCCGCAAAAGGACATAAGACGCGTTTTTTT CCCCCGCGCGTGCATTGTTCGTCGGTCGTCGCCTAACACATTTGTTTTAT CTTTTCAATGAACTTCTGCGGGCCTAAACGACAGTCTTCATGTCATCAAA GTATCTTTTTTCGGAAAATCTCCCCCTACCGCACCCGAAACCTTGGCGTA ACTTGGGACCGAAGCCCATCTCACTGTGTTCGTTGGGGGGAGGTTCAGAC CACGCAGCCTGAGTAGTCTCATGTCAAGCGCTTGTGAATGAAGACTGCCA GCACATGATACTTTCTATCTATGCGCTCCTACTTCATACTTCTGACTGCT GTGGATCTTTAACTGCCCTCGCACAGCCCTCCGCACTGAATTGCCCACAG GCCTTTGTCAACGTACTATATAACGGACGACGATCTTTCCTTCTACATAG GTGTCCCCTGGCAAGTGACCGTCACCCTGACCCTGCATCTGACACCATCG CACCACTCCGTTCTCATAGGCAAGCAGGCACCTGGATTTTCACCACACGC ATCCCAGCCATTTGCAGCTCTGCCTTCGCACACCACAGCCGACAACAGTC GTCCTGAACTTTTGAACTCTCTTGTCTTTCAGAACATTGCCCGACCCTTC GAACTTGAGAAAGGTAGAGAAAGCACCCCATTTACACCACTACTACCACG ACGAATATGGCAACTCTCAGCACCCGGGCCACTGGCACCAGCATCCCCAT TTCTGCCACCTACGTCTCGGTCCGTCGCTCTTCCCTCTTGTTCCTCACCC TCGGGTCATTTGCCATGGGGACAGTCCTCGCCAACATGGGCACGCGATCT TGGCGGCGTATTCAACGCTACATGGAGTCACGTCGTAGTAACGGGGGGCG ACGACCCGTGATTGTCTGCTTTGGAGACAGTATCACGCAAGGGGGACACA GCCCAGAATATGTCGGGTGGATGGGGCGTTTGGAAGACTTCTATGGTAGA AAAGCAGATGTGCTTAATCGTGGCTTTTCTGGATACAACACTGATTGGCT CTGCCGGATGTTGAATGATTTGTTTTTGCGATTATTTAGACGGCGACCAC CGGCCTTGGTGACGATCTGGGTGGGTGCGAATGACGCGACAGTTGAGAGC TCGACGCAGCACGTGCCCTTGTGGAAGTTTAAGCAGAATTTGGAGAAAAT GGTCCGTTTTTTCCGAAGGCTAGGACGCAGGGATCGAAAGGTAAAGAGAG AGGGAGGGAGATACGGAGCGTGGAACATCATTAGTTTCTACCTTTCTGGC AAAAACGAAGAGAATCTCCCAGTCCTCCTGGGCCTGTAATCATGTGTCAT TCACCTACTTACCCGCCCCGTCTTCCTCTTCCCCTCCTTCTCTCCCTCCT TCTCCATCTCTCTCCTTCATTTCCCCCCCACAGGTGGCCGTTCTCCTCAT TACCCCCCCTCCCCTCCACGAAGCAGATTGGCTCGCCTCGCTGCGTTCCT CCACTCCCTCCGCCCTTCCTGACCGCTCATTCGCCCGCACCTATGCATAT GCCCAAGCCGTCAAAGAAGTAGGACAAACGCTGAGAACACCCGTCGTGGA TATGCACGCGGCTCTTGAAGGAGGGCAAGACGAGGACAGGGGGGAGGAGG GGGTGCCCCCTCCGGGCGAAGCTTACAGAGGCTACCTTTCTGATGGTCTC CATTTGAATTTCAAGGGAAACAAAAAGGCCTTCGAGGCCATAATAGAGGG CATCAAGAATAATTTCCCTTGGCTCGATCCGATTAATCTGGAGATGCAGG GGCCAGCATGGGAGACGTTGAGGTCAGCTTATTTGGATGAAGCGGAGGGC GGGGTCGAGGGAGGGGGGGAGTGCGCTATAACCTTGTATAGCTCCAAGAG TAGCATCATCTTGAATTCGGATTAGAAAGTAGGGAGGGAGAAAGGATGGA GGGACACTGAAGGAGGGAGGGGGGAAGAAAAAAAAATCGTGGTATGGGTA TGGAAGA
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Coding sequence (CDS) from alignment at chr9:881432..884588+

>NO09G03020.1 ID=NO09G03020.1|Name=NO09G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr9:881432..884588+ (Nannochloropsis oceanica)
ATGGCAACTCTCAGCACCCGGGCCACTGGCACCAGCATCCCCATTTCTGC
CACCTACGTCTCGGTCCGTCGCTCTTCCCTCTTGTTCCTCACCCTCGGGT
CATTTGCCATGGGGACAGTCCTCGCCAACATGGGCACGCGATCTTGGCGG
CGTATTCAACGCTACATGGAGTCACGTCGTAGTAACGGGGGGCGACGACC
CGTGATTGTCTGCTTTGGAGACAGTATCACGCAAGGGGGACACAGCCCAG
AATATGTCGGGTGGATGGGGCGTTTGGAAGACTTCTATGGTAGAAAAGCA
GATGTGCTTAATCGTGGCTTTTCTGGATACAACACTGATTGGCTCTGCCG
GATGTTGAATGATTTGTTTTTGCGATTATTTAGACGGCGACCACCGGCCT
TGGTGACGATCTGGGTGGGTGCGAATGACGCGACAGTTGAGAGCTCGACG
CAGCACGTGCCCTTGTGGAAGTTTAAGCAGAATTTGGAGAAAATGGTCCG
TTTTTTCCGAAGGCTAGGACGCAGGGATCGAAAGGTGGCCGTTCTCCTCA
TTACCCCCCCTCCCCTCCACGAAGCAGATTGGCTCGCCTCGCTGCGTTCC
TCCACTCCCTCCGCCCTTCCTGACCGCTCATTCGCCCGCACCTATGCATA
TGCCCAAGCCGTCAAAGAAGTAGGACAAACGCTGAGAACACCCGTCGTGG
ATATGCACGCGGCTCTTGAAGGAGGGCAAGACGAGGACAGGGGGGAGGAG
GGGGTGCCCCCTCCGGGCGAAGCTTACAGAGGCTACCTTTCTGATGGTCT
CCATTTGAATTTCAAGGGAAACAAAAAGGCCTTCGAGGCCATAATAGAGG
GCATCAAGAATAATTTCCCTTGGCTCGATCCGATTAATCTGGAGATGCAG
GGGCCAGCATGGGAGACGTTGAGGTCAGCTTATTTGGATGAAGCGGAGGG
CGGGGTCGAGGGAGGGGGGGAGTGCGCTATAACCTTGTATAGCTCCAAGA
GTAGCATCATCTTGAATTCGGATTAG
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Synonyms
Publications