|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:881432..884588 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G03020.1 vs.
Match: XP_005852691.1 (gdsl lipase acylhydrolase family protein [Nannochloropsis gaditana CCMP526]; EKU23139.1 gdsl lipase acylhydrolase family protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 484.2 bits (1245), Expect = 3.400e-133 Identity = 235/340 (69.12%), Postives = 282/340 (82.94%), Query Frame = 0
Query: 1 MATLSTRATGTSIPISATYVSVRRSSLLFLTLGSFAMGTVLANMGTRSWRRIQRYMESRRSNGGRRPVIVCFGDSITQGGHSPEYVGWMGRLEDFYGRKADVLNRGFSGYNTDWLCRMLNDLFLRLFRRRPPALVTIWVGANDATVESSTQHVPLWKFKQNLEKMVRFFRRLGRRDRKVAVLLITPPPLHEADWLASLRSSTPSALPDRSFARTYAYAQAVKEVGQTLRTPVVDMHAALEGGQDEDRGEEGVPPPGEAYRGYLSDGLHLNFKGNKKAFEAIIEGIKNNFPWLDPINLEMQGPAWETLRSAYLDEAEGGVEGGGECAITLYSSKSSIILNS 341
MA+ + + ++P +Y+S+RRSSLL +TLGSFA+GT++ANM +RSWRR+QRY++SRRSNGGRRPVIVCFGDSITQGGHSPE+VGW+GRLEDFY RKADVLNRGFSGYNTDWL RML DLF R+FRRRPP LVTIW+GANDATVESS QHVPLWK+K+NLEKMVRFF+ LGRRDR+VA+LL+TPPPLHE WLA LRSS P++L DRSFART +YA A +EVGQ ++ PVVD+HA+ +E G EG+P E Y +LSDGLHLN KGN++AFEA+ + IK++FPWLDPINLE Q P WE+LRS YLDEAEG E G + LYSSKSS+I N+
Sbjct: 1 MASSMSSRSAIAVP-PTSYISIRRSSLLLITLGSFALGTLIANMTSRSWRRVQRYIDSRRSNGGRRPVIVCFGDSITQGGHSPEHVGWVGRLEDFYCRKADVLNRGFSGYNTDWLSRMLVDLFSRMFRRRPPVLVTIWLGANDATVESSRQHVPLWKYKENLEKMVRFFKGLGRRDRQVAILLVTPPPLHEGKWLAFLRSSCPTSLLDRSFARTASYALAAREVGQAIKVPVVDIHASFGVQIEEAVGGEGMPQD-ETYASFLSDGLHLNEKGNRRAFEAVRDSIKHHFPWLDPINLETQAPGWESLRSLYLDEAEGRGEKGEGGTVPLYSSKSSVIFNA 338
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G03020.1 ID=NO09G03020.1|Name=NO09G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=2964bp AATTCGGTGGTCCCACGTAACGCTCCAGATTAAGGAGGAACGCGGCATTC TTCTAGCTTACGTCATACGCTATGATTCAAAATTTCCGTTGTATTTAGGA CTAAATTGAACTTTCACTATCTTGTCAGGCAACCCTGGTTCAAGGCACAA GACACAAAGATCACTTCTATGTATTTCAGGGTCTGGAATACAGTTTTGAG ATTGAGTAAAGGAATGGATCGGGAACCAATCATGCAATTGTCTTTTTGAA CACCGTTGCAAATCCACGCGACACTGCATTTGCTGCAGGGAGAGATGTTT ATATGGTGCTTCAAAATTGGTAGTTCTCCGGCAGGCCACCCTGGGGCTCC ACGGGAAAATCTGTGGTTCTCAGACACCAGCCCGCGCACACCTTGAGGCC GTCAATTCCCGCCCCCTATCGCATCGATTTCAGGGCCGCCAATGGGGTAA GCAGGGCGATTGATGCATGTTCATATTCACTTGGGGATTTTGGCAACCAC GATCGGAAGAAAAGGGCCAATCGATTCCGAGTCCGAAAATGCAATCGCCA GCGTTTTGGACGCCTCTTCCCATTAGCACGTACATTGACGTACGTATGTC AACTAGCAGTGATGGTATTCTAGGCCACTGTCTCCGCTTGCCACTCCTCC ACCGTCTCCGCCTGCTACACCTTTGACCTTCGTGCCCATTCTCCGGTCGC GCCGCCCGCCTGCTGCTGCAGCTGGACATGCCCCTGCCAAGGGAAGATAA TCGGGCGCCGCACCGCGTAGAAGATGAACCCGCCCATGCCAACAGACTTA TGCTCCCGCGACGGTTCGTCGAGCATGCCGCCTTTCTGCGGCAGGATAAC TTCCTCAACAAATCCTACTGTTCTCGGTGCTCATTATGCCCACTTTCTCC AGCTCCAGCTCCCCCAGTTTCACATCGGGAACCAGAAGCGGGGCAACGCA GTCGAAGGCCTGGTTAAAAGACAAATACAAGTCCACGCGCCACCTGCTAG CTCTCCCCTCCCTCATCTTGTAATAACCCCCTGCTCCCTCCTCCGCGGCT CATCACCGCGCAAGTAAACGCCGGGTTCGCTGCAGCGCCCATATGTGAGC TCACTTGTATCCTGTACGTTGGTAAATGCAGCCGAGATTTGTTAATGGGC GTGTGATTTTAGTGGGAACTTCCGCAAAAGGACATAAGACGCGTTTTTTT CCCCCGCGCGTGCATTGTTCGTCGGTCGTCGCCTAACACATTTGTTTTAT CTTTTCAATGAACTTCTGCGGGCCTAAACGACAGTCTTCATGTCATCAAA GTATCTTTTTTCGGAAAATCTCCCCCTACCGCACCCGAAACCTTGGCGTA ACTTGGGACCGAAGCCCATCTCACTGTGTTCGTTGGGGGGAGGTTCAGAC CACGCAGCCTGAGTAGTCTCATGTCAAGCGCTTGTGAATGAAGACTGCCA GCACATGATACTTTCTATCTATGCGCTCCTACTTCATACTTCTGACTGCT GTGGATCTTTAACTGCCCTCGCACAGCCCTCCGCACTGAATTGCCCACAG GCCTTTGTCAACGTACTATATAACGGACGACGATCTTTCCTTCTACATAG GTGTCCCCTGGCAAGTGACCGTCACCCTGACCCTGCATCTGACACCATCG CACCACTCCGTTCTCATAGGCAAGCAGGCACCTGGATTTTCACCACACGC ATCCCAGCCATTTGCAGCTCTGCCTTCGCACACCACAGCCGACAACAGTC GTCCTGAACTTTTGAACTCTCTTGTCTTTCAGAACATTGCCCGACCCTTC GAACTTGAGAAAGGTAGAGAAAGCACCCCATTTACACCACTACTACCACG ACGAATATGGCAACTCTCAGCACCCGGGCCACTGGCACCAGCATCCCCAT TTCTGCCACCTACGTCTCGGTCCGTCGCTCTTCCCTCTTGTTCCTCACCC TCGGGTCATTTGCCATGGGGACAGTCCTCGCCAACATGGGCACGCGATCT TGGCGGCGTATTCAACGCTACATGGAGTCACGTCGTAGTAACGGGGGGCG ACGACCCGTGATTGTCTGCTTTGGAGACAGTATCACGCAAGGGGGACACA GCCCAGAATATGTCGGGTGGATGGGGCGTTTGGAAGACTTCTATGGTAGA AAAGCAGATGTGCTTAATCGTGGCTTTTCTGGATACAACACTGATTGGCT CTGCCGGATGTTGAATGATTTGTTTTTGCGATTATTTAGACGGCGACCAC CGGCCTTGGTGACGATCTGGGTGGGTGCGAATGACGCGACAGTTGAGAGC TCGACGCAGCACGTGCCCTTGTGGAAGTTTAAGCAGAATTTGGAGAAAAT GGTCCGTTTTTTCCGAAGGCTAGGACGCAGGGATCGAAAGGTGGCCGTTC TCCTCATTACCCCCCCTCCCCTCCACGAAGCAGATTGGCTCGCCTCGCTG CGTTCCTCCACTCCCTCCGCCCTTCCTGACCGCTCATTCGCCCGCACCTA TGCATATGCCCAAGCCGTCAAAGAAGTAGGACAAACGCTGAGAACACCCG TCGTGGATATGCACGCGGCTCTTGAAGGAGGGCAAGACGAGGACAGGGGG GAGGAGGGGGTGCCCCCTCCGGGCGAAGCTTACAGAGGCTACCTTTCTGA TGGTCTCCATTTGAATTTCAAGGGAAACAAAAAGGCCTTCGAGGCCATAA TAGAGGGCATCAAGAATAATTTCCCTTGGCTCGATCCGATTAATCTGGAG ATGCAGGGGCCAGCATGGGAGACGTTGAGGTCAGCTTATTTGGATGAAGC GGAGGGCGGGGTCGAGGGAGGGGGGGAGTGCGCTATAACCTTGTATAGCT CCAAGAGTAGCATCATCTTGAATTCGGATTAGAAAGTAGGGAGGGAGAAA GGATGGAGGGACACTGAAGGAGGGAGGGGGGAAGAAAAAAAAATCGTGGT ATGGGTATGGAAGA back to topprotein sequence of NO09G03020.1 >NO09G03020.1-protein ID=NO09G03020.1-protein|Name=NO09G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp MATLSTRATGTSIPISATYVSVRRSSLLFLTLGSFAMGTVLANMGTRSWR RIQRYMESRRSNGGRRPVIVCFGDSITQGGHSPEYVGWMGRLEDFYGRKA DVLNRGFSGYNTDWLCRMLNDLFLRLFRRRPPALVTIWVGANDATVESST QHVPLWKFKQNLEKMVRFFRRLGRRDRKVAVLLITPPPLHEADWLASLRS STPSALPDRSFARTYAYAQAVKEVGQTLRTPVVDMHAALEGGQDEDRGEE GVPPPGEAYRGYLSDGLHLNFKGNKKAFEAIIEGIKNNFPWLDPINLEMQ GPAWETLRSAYLDEAEGGVEGGGECAITLYSSKSSIILNSD* back to topmRNA from alignment at chr9:881432..884588+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G03020.1 ID=NO09G03020.1|Name=NO09G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=3157bp|location=Sequence derived from alignment at chr9:881432..884588+ (Nannochloropsis oceanica) AATTCGGTGGTCCCACGTAACGCTCCAGATTAAGGAGGAACGCGGCATTC
TTCTAGCTTACGTCATACGCTATGATTCAAAATTTCCGTTGTATTTAGGA
CTAAATTGAACTTTCACTATCTTGTCAGGCAACCCTGGTTCAAGGCACAA
GACACAAAGATCACTTCTATGTATTTCAGGGTCTGGAATACAGTTTTGAG
ATTGAGTAAAGGAATGGATCGGGAACCAATCATGCAATTGTCTTTTTGAA
CACCGTTGCAAATCCACGCGACACTGCATTTGCTGCAGGGAGAGATGTTT
ATATGGTGCTTCAAAATTGGTAGTTCTCCGGCAGGCCACCCTGGGGCTCC
ACGGGAAAATCTGTGGTTCTCAGACACCAGCCCGCGCACACCTTGAGGCC
GTCAATTCCCGCCCCCTATCGCATCGATTTCAGGGCCGCCAATGGGGTAA
GCAGGGCGATTGATGCATGTTCATATTCACTTGGGGATTTTGGCAACCAC
GATCGGAAGAAAAGGGCCAATCGATTCCGAGTCCGAAAATGCAATCGCCA
GCGTTTTGGACGCCTCTTCCCATTAGCACGTACATTGACGTACGTATGTC
AACTAGCAGTGATGGTATTCTAGGCCACTGTCTCCGCTTGCCACTCCTCC
ACCGTCTCCGCCTGCTACACCTTTGACCTTCGTGCCCATTCTCCGGTCGC
GCCGCCCGCCTGCTGCTGCAGCTGGACATGCCCCTGCCAAGGGAAGATAA
TCGGGCGCCGCACCGCGTAGAAGATGAACCCGCCCATGCCAACAGACTTA
TGCTCCCGCGACGGTTCGTCGAGCATGCCGCCTTTCTGCGGCAGGATAAC
TTCCTCAACAAATCCTACTGTTCTCGGTGCTCATTATGCCCACTTTCTCC
AGCTCCAGCTCCCCCAGTTTCACATCGGGAACCAGAAGCGGGGCAACGCA
GTCGAAGGCCTGGTTAAAAGACAAATACAAGTCCACGCGCCACCTGCTAG
CTCTCCCCTCCCTCATCTTGTAATAACCCCCTGCTCCCTCCTCCGCGGCT
CATCACCGCGCAAGTAAACGCCGGGTTCGCTGCAGCGCCCATATGTGAGC
TCACTTGTATCCTGTACGTTGGTAAATGCAGCCGAGATTTGTTAATGGGC
GTGTGATTTTAGTGGGAACTTCCGCAAAAGGACATAAGACGCGTTTTTTT
CCCCCGCGCGTGCATTGTTCGTCGGTCGTCGCCTAACACATTTGTTTTAT
CTTTTCAATGAACTTCTGCGGGCCTAAACGACAGTCTTCATGTCATCAAA
GTATCTTTTTTCGGAAAATCTCCCCCTACCGCACCCGAAACCTTGGCGTA
ACTTGGGACCGAAGCCCATCTCACTGTGTTCGTTGGGGGGAGGTTCAGAC
CACGCAGCCTGAGTAGTCTCATGTCAAGCGCTTGTGAATGAAGACTGCCA
GCACATGATACTTTCTATCTATGCGCTCCTACTTCATACTTCTGACTGCT
GTGGATCTTTAACTGCCCTCGCACAGCCCTCCGCACTGAATTGCCCACAG
GCCTTTGTCAACGTACTATATAACGGACGACGATCTTTCCTTCTACATAG
GTGTCCCCTGGCAAGTGACCGTCACCCTGACCCTGCATCTGACACCATCG
CACCACTCCGTTCTCATAGGCAAGCAGGCACCTGGATTTTCACCACACGC
ATCCCAGCCATTTGCAGCTCTGCCTTCGCACACCACAGCCGACAACAGTC
GTCCTGAACTTTTGAACTCTCTTGTCTTTCAGAACATTGCCCGACCCTTC
GAACTTGAGAAAGGTAGAGAAAGCACCCCATTTACACCACTACTACCACG
ACGAATATGGCAACTCTCAGCACCCGGGCCACTGGCACCAGCATCCCCAT
TTCTGCCACCTACGTCTCGGTCCGTCGCTCTTCCCTCTTGTTCCTCACCC
TCGGGTCATTTGCCATGGGGACAGTCCTCGCCAACATGGGCACGCGATCT
TGGCGGCGTATTCAACGCTACATGGAGTCACGTCGTAGTAACGGGGGGCG
ACGACCCGTGATTGTCTGCTTTGGAGACAGTATCACGCAAGGGGGACACA
GCCCAGAATATGTCGGGTGGATGGGGCGTTTGGAAGACTTCTATGGTAGA
AAAGCAGATGTGCTTAATCGTGGCTTTTCTGGATACAACACTGATTGGCT
CTGCCGGATGTTGAATGATTTGTTTTTGCGATTATTTAGACGGCGACCAC
CGGCCTTGGTGACGATCTGGGTGGGTGCGAATGACGCGACAGTTGAGAGC
TCGACGCAGCACGTGCCCTTGTGGAAGTTTAAGCAGAATTTGGAGAAAAT
GGTCCGTTTTTTCCGAAGGCTAGGACGCAGGGATCGAAAGGTAAAGAGAG
AGGGAGGGAGATACGGAGCGTGGAACATCATTAGTTTCTACCTTTCTGGC
AAAAACGAAGAGAATCTCCCAGTCCTCCTGGGCCTGTAATCATGTGTCAT
TCACCTACTTACCCGCCCCGTCTTCCTCTTCCCCTCCTTCTCTCCCTCCT
TCTCCATCTCTCTCCTTCATTTCCCCCCCACAGGTGGCCGTTCTCCTCAT
TACCCCCCCTCCCCTCCACGAAGCAGATTGGCTCGCCTCGCTGCGTTCCT
CCACTCCCTCCGCCCTTCCTGACCGCTCATTCGCCCGCACCTATGCATAT
GCCCAAGCCGTCAAAGAAGTAGGACAAACGCTGAGAACACCCGTCGTGGA
TATGCACGCGGCTCTTGAAGGAGGGCAAGACGAGGACAGGGGGGAGGAGG
GGGTGCCCCCTCCGGGCGAAGCTTACAGAGGCTACCTTTCTGATGGTCTC
CATTTGAATTTCAAGGGAAACAAAAAGGCCTTCGAGGCCATAATAGAGGG
CATCAAGAATAATTTCCCTTGGCTCGATCCGATTAATCTGGAGATGCAGG
GGCCAGCATGGGAGACGTTGAGGTCAGCTTATTTGGATGAAGCGGAGGGC
GGGGTCGAGGGAGGGGGGGAGTGCGCTATAACCTTGTATAGCTCCAAGAG
TAGCATCATCTTGAATTCGGATTAGAAAGTAGGGAGGGAGAAAGGATGGA
GGGACACTGAAGGAGGGAGGGGGGAAGAAAAAAAAATCGTGGTATGGGTA
TGGAAGA back to topCoding sequence (CDS) from alignment at chr9:881432..884588+ >NO09G03020.1 ID=NO09G03020.1|Name=NO09G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr9:881432..884588+ (Nannochloropsis oceanica) ATGGCAACTCTCAGCACCCGGGCCACTGGCACCAGCATCCCCATTTCTGC CACCTACGTCTCGGTCCGTCGCTCTTCCCTCTTGTTCCTCACCCTCGGGT CATTTGCCATGGGGACAGTCCTCGCCAACATGGGCACGCGATCTTGGCGG CGTATTCAACGCTACATGGAGTCACGTCGTAGTAACGGGGGGCGACGACC CGTGATTGTCTGCTTTGGAGACAGTATCACGCAAGGGGGACACAGCCCAG AATATGTCGGGTGGATGGGGCGTTTGGAAGACTTCTATGGTAGAAAAGCA GATGTGCTTAATCGTGGCTTTTCTGGATACAACACTGATTGGCTCTGCCG GATGTTGAATGATTTGTTTTTGCGATTATTTAGACGGCGACCACCGGCCT TGGTGACGATCTGGGTGGGTGCGAATGACGCGACAGTTGAGAGCTCGACG CAGCACGTGCCCTTGTGGAAGTTTAAGCAGAATTTGGAGAAAATGGTCCG TTTTTTCCGAAGGCTAGGACGCAGGGATCGAAAGGTGGCCGTTCTCCTCA TTACCCCCCCTCCCCTCCACGAAGCAGATTGGCTCGCCTCGCTGCGTTCC TCCACTCCCTCCGCCCTTCCTGACCGCTCATTCGCCCGCACCTATGCATA TGCCCAAGCCGTCAAAGAAGTAGGACAAACGCTGAGAACACCCGTCGTGG ATATGCACGCGGCTCTTGAAGGAGGGCAAGACGAGGACAGGGGGGAGGAG GGGGTGCCCCCTCCGGGCGAAGCTTACAGAGGCTACCTTTCTGATGGTCT CCATTTGAATTTCAAGGGAAACAAAAAGGCCTTCGAGGCCATAATAGAGG GCATCAAGAATAATTTCCCTTGGCTCGATCCGATTAATCTGGAGATGCAG GGGCCAGCATGGGAGACGTTGAGGTCAGCTTATTTGGATGAAGCGGAGGG CGGGGTCGAGGGAGGGGGGGAGTGCGCTATAACCTTGTATAGCTCCAAGA GTAGCATCATCTTGAATTCGGATTAG back to top
|