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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr9 | genome | chr9:871967..873806 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO09G02960.1 vs.
Match: EWM27499.1 (hypothetical protein Naga_100099g2 [Nannochloropsis gaditana]) HSP 1 Score: 398.3 bits (1022), Expect = 3.100e-107 Identity = 241/438 (55.02%), Postives = 287/438 (65.53%), Query Frame = 0
Query: 14 AENGVELTISTLGCAAAPVFRTATLEDCRVGVTFLDSLAPKGEMSGQRGNAARLGGARGEGGGGGLIPGTVLELYGASGSGKTEVALNAVCGWVLPKALGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQ----------------------YLTAALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPTLLVLDSLGSLFYERKAAESCQQGQTCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHGGREMEGGREGGRDGYLYLGLEHKEYMPGQWSKLVTHRMTLVKEDGGGGGGGGGGGGGGGGGERGRAVFSARVVSMGMVPQQQQQQQQQQQYQQQQRLLQGEGRG-GAVAVHAWFQVGKEGVLAYGEGQE 429
A+ EL+ISTLGCAA P+FRTA CRV V FLD+LAP ++ G G G AR +G GGGL+PGTVLELYGASGSGKTEVALNAVCGWVLP+ GVGGVAV+VD+DFRVDVRRLRCLLL RIR+AL GG E R Q T RK + + ET++ S F A+ + AA+ Q+VL RC+D+LEAFSVLETLK+DLD+G GAG PTL+VLDSLGS FYERKAAESC QGQ+CFD+M+ARC+GRMA ++AV+V+ACKPALFAG RTVH GG+ EGG+E G Y Y GLEHKEYMPGQWS+LVTHR+TLVKE GG GG E AVFSAR V +G + Q Q +G G G G +A H WF+V ++G+ G +E
Sbjct: 7 ADEPEELSISTLGCAAGPIFRTAATGSCRVNVPFLDTLAPITKV-GVAGEGLPQGRAREDGKGGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRKFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERR-------QGTKRKW---SNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGK--EGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTLVKE------------GGEGGRE---AVFSARAVLLGAL-----------QPHQPGPTWKGMGGGAGVLASHCWFKVEQDGICQVGWPKE 405
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO09G02960.1 ID=NO09G02960.1|Name=NO09G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp AAAAACAAAAAAACATACATACAGGCGTGCTTGTTCCGTGCGCGAGGAAG CGGCAGCGCGCGTTCAAACCTCGCGAGATGTTGCTCCAACAAACAGCTGG AGGAGGAGACAAAGGAGCGGAAAATGGGGTGGAGTTGACTATTTCGACCT TAGGGTGTGCAGCGGCACCCGTCTTTCGCACCGCTACCTTGGAGGACTGC CGTGTAGGCGTGACATTTCTTGATTCCCTGGCCCCAAAGGGAGAAATGAG CGGCCAGAGAGGAAATGCTGCGCGGCTAGGAGGTGCACGGGGAGAAGGAG GAGGAGGAGGGCTGATTCCGGGGACGGTGCTGGAGCTGTACGGCGCATCG GGGAGCGGCAAGACCGAAGTGGCACTCAATGCCGTGTGTGGTTGGGTGCT GCCCAAGGCGTTAGGAGGGGTGGGAGGCGTTGCTGTGATCGTGGATCTGG ACTTCCGGGTGGATGTGCGCCGGTTGCGGTGCTTGCTCTTAGCTCGTATC CGACGGGCCTTGGCAACAGCAGGAGGAGGAGCCGTTGAAGGACGAGATAA TGGACTGCAGAATGGACAGCCAACACATCGAAAATGCCATCAAAGCAACA AGAACGATAAAGAAACTGCACATCCCTCCTCTTTCTCAACCGCCACCGCA TTCACAGCTTCCCAATACCTAACCGCGGCCCTCCACCAAATCGTCCTCGC CCGGTGCATGGACGAGCTCGAAGCCTTCTCCGTCCTAGAAACCCTCAAAT TTGATCTTGACAAAGGTCCAGGCGCTGGTGTCCCAACCCTTCTCGTTCTG GACAGTCTGGGGTCGTTATTTTATGAAAGAAAAGCGGCGGAGAGCTGCCA GCAAGGGCAAACCTGTTTTGATTTCATGGTTGCGCGGTGCGTGGGTCGAA TGGCAACAGCGCGGGCAGTTGCTGTGGTGGCGTGCAAGCCTGCTTTGTTC GCGGGGGCACGGACGGTGCACCATGGAGGGAGAGAGATGGAGGGAGGGAG GGAGGGAGGGAGGGACGGGTACCTGTACCTCGGGCTTGAGCATAAGGAGT ACATGCCAGGGCAGTGGTCTAAGCTGGTGACGCATCGGATGACGCTGGTG AAGGAAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGAAAGGGGGAGAGCAGTTTTCTCAGCGAGGGTGGTGTCGA TGGGCATGGTGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAC CAGCAGCAGCAGCGACTGCTGCAGGGAGAAGGACGAGGAGGGGCAGTGGC AGTGCATGCGTGGTTCCAGGTGGGAAAGGAGGGAGTACTAGCGTATGGCG AAGGACAGGAAGGAGAGTGCCAGTAAAAGAGAGGGAGGGAATGGTAGAGG GAGGGAGGGAGGGAGGGAGGAAGCAATGTACAGCCCTTTCTCCGTGTGGA GCTAATAGGTATAAATGTACATGTTAATTACCAGCAATCGCATCGCCTAA GCTAGTCCGCTCGAAGGGGGCGTGGGAGGAGAGAAGGGGCCTGAAAAGAA GAAACCACAGAAAAGTATAAAACGAGTAAGAGAGGGGAAAAGGGTCATGA AAGGAGCGCACACACCTTAAGGTAAGGTAAGAAAAGGTGGGGCTGTCGGC CGGCTGCGAGGGTCCACAACAGAATGAAAATACGCGAGTTGAGATATCCA ACAAAGGGAAAGGAATGGCAATGGCGATGGTTCTCTGCTGTCCCTCCTTC TTCCCGCCTCGGTCCTTAGAATGTCGGTCGTATGCTGCGTCGTCAAAAAG GGAGGAGGGGGAGGAGAGAAAGCAACTAACTAACGTCAGT back to topprotein sequence of NO09G02960.1 >NO09G02960.1-protein ID=NO09G02960.1-protein|Name=NO09G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp MLLQQTAGGGDKGAENGVELTISTLGCAAAPVFRTATLEDCRVGVTFLDS LAPKGEMSGQRGNAARLGGARGEGGGGGLIPGTVLELYGASGSGKTEVAL NAVCGWVLPKALGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGG GAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTA ALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPTLLVLDSLGSLFYE RKAAESCQQGQTCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHG GREMEGGREGGRDGYLYLGLEHKEYMPGQWSKLVTHRMTLVKEDGGGGGG GGGGGGGGGGGERGRAVFSARVVSMGMVPQQQQQQQQQQQYQQQQRLLQG EGRGGAVAVHAWFQVGKEGVLAYGEGQEGECQ* back to topmRNA from alignment at chr9:871967..873806- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO09G02960.1 ID=NO09G02960.1|Name=NO09G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp|location=Sequence derived from alignment at chr9:871967..873806- (Nannochloropsis oceanica) AAAAACAAAAAAACATACATACAGGCGTGCTTGTTCCGTGCGCGAGGAAG
CGGCAGCGCGCGTTCAAACCTCGCGAGATGTTGCTCCAACAAACAGCTGG
AGGAGGAGACAAAGGAGCGGAAAATGGGGTGGAGTTGACTATTTCGACCT
TAGGGTGTGCAGCGGCACCCGTCTTTCGCACCGCTACCTTGGAGGACTGC
CGTGTAGGCGTGACATTTCTTGATTCCCTGGCCCCAAAGGGAGAAATGAG
CGGCCAGAGAGGAAATGCTGCGCGGCTAGGAGGTGCACGGGGAGAAGGAG
GAGGAGGAGGGCTGATTCCGGGGACGGTGCTGGAGCTGTACGGCGCATCG
GGGAGCGGCAAGACCGAAGTGGCACTCAATGCCGTGTGTGGTTGGGTGCT
GCCCAAGGCGTTAGGAGGGGTGGGAGGCGTTGCTGTGATCGTGGATCTGG
ACTTCCGGGTGGATGTGCGCCGGTTGCGGTGCTTGCTCTTAGCTCGTATC
CGACGGGCCTTGGCAACAGCAGGAGGAGGAGCCGTTGAAGGACGAGATAA
TGGACTGCAGAATGGACAGCCAACACATCGAAAATGCCATCAAAGCAACA
AGAACGATAAAGAAACTGCACATCCCTCCTCTTTCTCAACCGCCACCGCA
TTCACAGCTTCCCAATACCTAACCGCGGCCCTCCACCAAATCGTCCTCGC
CCGGTGCATGGACGAGCTCGAAGCCTTCTCCGTCCTAGAAACCCTCAAAT
TTGATCTTGACAAAGGTCCAGGCGCTGGTGTCCCAACCCTTCTCGTTCTG
GACAGTCTGGGGTCGTTATTTTATGAAAGAAAAGCGGCGGAGAGCTGCCA
GCAAGGGCAAACCTGTTTTGATTTCATGGTTGCGCGGTGCGTGGGTCGAA
TGGCAACAGCGCGGGCAGTTGCTGTGGTGGCGTGCAAGCCTGCTTTGTTC
GCGGGGGCACGGACGGTGCACCATGGAGGGAGAGAGATGGAGGGAGGGAG
GGAGGGAGGGAGGGACGGGTACCTGTACCTCGGGCTTGAGCATAAGGAGT
ACATGCCAGGGCAGTGGTCTAAGCTGGTGACGCATCGGATGACGCTGGTG
AAGGAAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAAAGGGGGAGAGCAGTTTTCTCAGCGAGGGTGGTGTCGA
TGGGCATGGTGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAC
CAGCAGCAGCAGCGACTGCTGCAGGGAGAAGGACGAGGAGGGGCAGTGGC
AGTGCATGCGTGGTTCCAGGTGGGAAAGGAGGGAGTACTAGCGTATGGCG
AAGGACAGGAAGGAGAGTGCCAGTAAAAGAGAGGGAGGGAATGGTAGAGG
GAGGGAGGGAGGGAGGGAGGAAGCAATGTACAGCCCTTTCTCCGTGTGGA
GCTAATAGGTATAAATGTACATGTTAATTACCAGCAATCGCATCGCCTAA
GCTAGTCCGCTCGAAGGGGGCGTGGGAGGAGAGAAGGGGCCTGAAAAGAA
GAAACCACAGAAAAGTATAAAACGAGTAAGAGAGGGGAAAAGGGTCATGA
AAGGAGCGCACACACCTTAAGGTAAGGTAAGAAAAGGTGGGGCTGTCGGC
CGGCTGCGAGGGTCCACAACAGAATGAAAATACGCGAGTTGAGATATCCA
ACAAAGGGAAAGGAATGGCAATGGCGATGGTTCTCTGCTGTCCCTCCTTC
TTCCCGCCTCGGTCCTTAGAATGTCGGTCGTATGCTGCGTCGTCAAAAAG
GGAGGAGGGGGAGGAGAGAAAGCAACTAACTAACGTCAGT back to topCoding sequence (CDS) from alignment at chr9:871967..873806- >NO09G02960.1 ID=NO09G02960.1|Name=NO09G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at chr9:871967..873806- (Nannochloropsis oceanica) ATGTTGCTCCAACAAACAGCTGGAGGAGGAGACAAAGGAGCGGAAAATGG GGTGGAGTTGACTATTTCGACCTTAGGGTGTGCAGCGGCACCCGTCTTTC GCACCGCTACCTTGGAGGACTGCCGTGTAGGCGTGACATTTCTTGATTCC CTGGCCCCAAAGGGAGAAATGAGCGGCCAGAGAGGAAATGCTGCGCGGCT AGGAGGTGCACGGGGAGAAGGAGGAGGAGGAGGGCTGATTCCGGGGACGG TGCTGGAGCTGTACGGCGCATCGGGGAGCGGCAAGACCGAAGTGGCACTC AATGCCGTGTGTGGTTGGGTGCTGCCCAAGGCGTTAGGAGGGGTGGGAGG CGTTGCTGTGATCGTGGATCTGGACTTCCGGGTGGATGTGCGCCGGTTGC GGTGCTTGCTCTTAGCTCGTATCCGACGGGCCTTGGCAACAGCAGGAGGA GGAGCCGTTGAAGGACGAGATAATGGACTGCAGAATGGACAGCCAACACA TCGAAAATGCCATCAAAGCAACAAGAACGATAAAGAAACTGCACATCCCT CCTCTTTCTCAACCGCCACCGCATTCACAGCTTCCCAATACCTAACCGCG GCCCTCCACCAAATCGTCCTCGCCCGGTGCATGGACGAGCTCGAAGCCTT CTCCGTCCTAGAAACCCTCAAATTTGATCTTGACAAAGGTCCAGGCGCTG GTGTCCCAACCCTTCTCGTTCTGGACAGTCTGGGGTCGTTATTTTATGAA AGAAAAGCGGCGGAGAGCTGCCAGCAAGGGCAAACCTGTTTTGATTTCAT GGTTGCGCGGTGCGTGGGTCGAATGGCAACAGCGCGGGCAGTTGCTGTGG TGGCGTGCAAGCCTGCTTTGTTCGCGGGGGCACGGACGGTGCACCATGGA GGGAGAGAGATGGAGGGAGGGAGGGAGGGAGGGAGGGACGGGTACCTGTA CCTCGGGCTTGAGCATAAGGAGTACATGCCAGGGCAGTGGTCTAAGCTGG TGACGCATCGGATGACGCTGGTGAAGGAAGATGGAGGAGGAGGAGGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGGGGGAGAGCAGT TTTCTCAGCGAGGGTGGTGTCGATGGGCATGGTGCCGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCAATACCAGCAGCAGCAGCGACTGCTGCAGGGA GAAGGACGAGGAGGGGCAGTGGCAGTGCATGCGTGGTTCCAGGTGGGAAA GGAGGGAGTACTAGCGTATGGCGAAGGACAGGAAGGAGAGTGCCAGTAA back to top
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