NO09G02960.1, NO09G02960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02960.1
Unique NameNO09G02960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1840
Alignment locationchr9:871967..873806 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:871967..873806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO09G02960.1 vs.
Match: EWM27499.1 (hypothetical protein Naga_100099g2 [Nannochloropsis gaditana])

HSP 1 Score: 398.3 bits (1022), Expect = 3.100e-107
Identity = 241/438 (55.02%), Postives = 287/438 (65.53%), Query Frame = 0
Query:   14 AENGVELTISTLGCAAAPVFRTATLEDCRVGVTFLDSLAPKGEMSGQRGNAARLGGARGEGGGGGLIPGTVLELYGASGSGKTEVALNAVCGWVLPKALGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGGGAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQ----------------------YLTAALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPTLLVLDSLGSLFYERKAAESCQQGQTCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHGGREMEGGREGGRDGYLYLGLEHKEYMPGQWSKLVTHRMTLVKEDGGGGGGGGGGGGGGGGGERGRAVFSARVVSMGMVPQQQQQQQQQQQYQQQQRLLQGEGRG-GAVAVHAWFQVGKEGVLAYGEGQE 429
            A+   EL+ISTLGCAA P+FRTA    CRV V FLD+LAP  ++ G  G     G AR +G GGGL+PGTVLELYGASGSGKTEVALNAVCGWVLP+   GVGGVAV+VD+DFRVDVRRLRCLLL RIR+AL    GG  E R       Q T RK    +  + ET++    S    F A+                       +  AA+ Q+VL RC+D+LEAFSVLETLK+DLD+G GAG PTL+VLDSLGS FYERKAAESC QGQ+CFD+M+ARC+GRMA ++AV+V+ACKPALFAG RTVH GG+  EGG+E G   Y Y GLEHKEYMPGQWS+LVTHR+TLVKE            GG GG E   AVFSAR V +G +           Q  Q     +G G G G +A H WF+V ++G+   G  +E
Sbjct:    7 ADEPEELSISTLGCAAGPIFRTAATGSCRVNVPFLDTLAPITKV-GVAGEGLPQGRAREDGKGGGLLPGTVLELYGASGSGKTEVALNAVCGWVLPRKFSGVGGVAVVVDMDFRVDVRRLRCLLLGRIRKALQLGQGGWDERR-------QGTKRKW---SNGESETSYGQGISGNNGFRATTMGSIGTPDSAGACQGGEDTPFVWTQAAMDQVVLVRCVDDLEAFSVLETLKYDLDRGEGAGTPTLVVLDSLGSCFYERKAAESCHQGQSCFDYMIARCIGRMAQSQAVSVIACKPALFAGQRTVHEGGK--EGGKEEGNGRYRYPGLEHKEYMPGQWSRLVTHRLTLVKE------------GGEGGRE---AVFSARAVLLGAL-----------QPHQPGPTWKGMGGGAGVLASHCWFKVEQDGICQVGWPKE 405          
The following BLAST results are available for this feature:
BLAST of NO09G02960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27499.13.100e-10755.02hypothetical protein Naga_100099g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02960NO09G02960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02960.1NO09G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02960.1.cds1NO09G02960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02960.1 ID=NO09G02960.1|Name=NO09G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp
AAAAACAAAAAAACATACATACAGGCGTGCTTGTTCCGTGCGCGAGGAAG
CGGCAGCGCGCGTTCAAACCTCGCGAGATGTTGCTCCAACAAACAGCTGG
AGGAGGAGACAAAGGAGCGGAAAATGGGGTGGAGTTGACTATTTCGACCT
TAGGGTGTGCAGCGGCACCCGTCTTTCGCACCGCTACCTTGGAGGACTGC
CGTGTAGGCGTGACATTTCTTGATTCCCTGGCCCCAAAGGGAGAAATGAG
CGGCCAGAGAGGAAATGCTGCGCGGCTAGGAGGTGCACGGGGAGAAGGAG
GAGGAGGAGGGCTGATTCCGGGGACGGTGCTGGAGCTGTACGGCGCATCG
GGGAGCGGCAAGACCGAAGTGGCACTCAATGCCGTGTGTGGTTGGGTGCT
GCCCAAGGCGTTAGGAGGGGTGGGAGGCGTTGCTGTGATCGTGGATCTGG
ACTTCCGGGTGGATGTGCGCCGGTTGCGGTGCTTGCTCTTAGCTCGTATC
CGACGGGCCTTGGCAACAGCAGGAGGAGGAGCCGTTGAAGGACGAGATAA
TGGACTGCAGAATGGACAGCCAACACATCGAAAATGCCATCAAAGCAACA
AGAACGATAAAGAAACTGCACATCCCTCCTCTTTCTCAACCGCCACCGCA
TTCACAGCTTCCCAATACCTAACCGCGGCCCTCCACCAAATCGTCCTCGC
CCGGTGCATGGACGAGCTCGAAGCCTTCTCCGTCCTAGAAACCCTCAAAT
TTGATCTTGACAAAGGTCCAGGCGCTGGTGTCCCAACCCTTCTCGTTCTG
GACAGTCTGGGGTCGTTATTTTATGAAAGAAAAGCGGCGGAGAGCTGCCA
GCAAGGGCAAACCTGTTTTGATTTCATGGTTGCGCGGTGCGTGGGTCGAA
TGGCAACAGCGCGGGCAGTTGCTGTGGTGGCGTGCAAGCCTGCTTTGTTC
GCGGGGGCACGGACGGTGCACCATGGAGGGAGAGAGATGGAGGGAGGGAG
GGAGGGAGGGAGGGACGGGTACCTGTACCTCGGGCTTGAGCATAAGGAGT
ACATGCCAGGGCAGTGGTCTAAGCTGGTGACGCATCGGATGACGCTGGTG
AAGGAAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAAAGGGGGAGAGCAGTTTTCTCAGCGAGGGTGGTGTCGA
TGGGCATGGTGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAC
CAGCAGCAGCAGCGACTGCTGCAGGGAGAAGGACGAGGAGGGGCAGTGGC
AGTGCATGCGTGGTTCCAGGTGGGAAAGGAGGGAGTACTAGCGTATGGCG
AAGGACAGGAAGGAGAGTGCCAGTAAAAGAGAGGGAGGGAATGGTAGAGG
GAGGGAGGGAGGGAGGGAGGAAGCAATGTACAGCCCTTTCTCCGTGTGGA
GCTAATAGGTATAAATGTACATGTTAATTACCAGCAATCGCATCGCCTAA
GCTAGTCCGCTCGAAGGGGGCGTGGGAGGAGAGAAGGGGCCTGAAAAGAA
GAAACCACAGAAAAGTATAAAACGAGTAAGAGAGGGGAAAAGGGTCATGA
AAGGAGCGCACACACCTTAAGGTAAGGTAAGAAAAGGTGGGGCTGTCGGC
CGGCTGCGAGGGTCCACAACAGAATGAAAATACGCGAGTTGAGATATCCA
ACAAAGGGAAAGGAATGGCAATGGCGATGGTTCTCTGCTGTCCCTCCTTC
TTCCCGCCTCGGTCCTTAGAATGTCGGTCGTATGCTGCGTCGTCAAAAAG
GGAGGAGGGGGAGGAGAGAAAGCAACTAACTAACGTCAGT
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protein sequence of NO09G02960.1

>NO09G02960.1-protein ID=NO09G02960.1-protein|Name=NO09G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MLLQQTAGGGDKGAENGVELTISTLGCAAAPVFRTATLEDCRVGVTFLDS
LAPKGEMSGQRGNAARLGGARGEGGGGGLIPGTVLELYGASGSGKTEVAL
NAVCGWVLPKALGGVGGVAVIVDLDFRVDVRRLRCLLLARIRRALATAGG
GAVEGRDNGLQNGQPTHRKCHQSNKNDKETAHPSSFSTATAFTASQYLTA
ALHQIVLARCMDELEAFSVLETLKFDLDKGPGAGVPTLLVLDSLGSLFYE
RKAAESCQQGQTCFDFMVARCVGRMATARAVAVVACKPALFAGARTVHHG
GREMEGGREGGRDGYLYLGLEHKEYMPGQWSKLVTHRMTLVKEDGGGGGG
GGGGGGGGGGGERGRAVFSARVVSMGMVPQQQQQQQQQQQYQQQQRLLQG
EGRGGAVAVHAWFQVGKEGVLAYGEGQEGECQ*
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mRNA from alignment at chr9:871967..873806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02960.1 ID=NO09G02960.1|Name=NO09G02960.1|organism=Nannochloropsis oceanica|type=mRNA|length=1840bp|location=Sequence derived from alignment at chr9:871967..873806- (Nannochloropsis oceanica)
AAAAACAAAAAAACATACATACAGGCGTGCTTGTTCCGTGCGCGAGGAAG CGGCAGCGCGCGTTCAAACCTCGCGAGATGTTGCTCCAACAAACAGCTGG AGGAGGAGACAAAGGAGCGGAAAATGGGGTGGAGTTGACTATTTCGACCT TAGGGTGTGCAGCGGCACCCGTCTTTCGCACCGCTACCTTGGAGGACTGC CGTGTAGGCGTGACATTTCTTGATTCCCTGGCCCCAAAGGGAGAAATGAG CGGCCAGAGAGGAAATGCTGCGCGGCTAGGAGGTGCACGGGGAGAAGGAG GAGGAGGAGGGCTGATTCCGGGGACGGTGCTGGAGCTGTACGGCGCATCG GGGAGCGGCAAGACCGAAGTGGCACTCAATGCCGTGTGTGGTTGGGTGCT GCCCAAGGCGTTAGGAGGGGTGGGAGGCGTTGCTGTGATCGTGGATCTGG ACTTCCGGGTGGATGTGCGCCGGTTGCGGTGCTTGCTCTTAGCTCGTATC CGACGGGCCTTGGCAACAGCAGGAGGAGGAGCCGTTGAAGGACGAGATAA TGGACTGCAGAATGGACAGCCAACACATCGAAAATGCCATCAAAGCAACA AGAACGATAAAGAAACTGCACATCCCTCCTCTTTCTCAACCGCCACCGCA TTCACAGCTTCCCAATACCTAACCGCGGCCCTCCACCAAATCGTCCTCGC CCGGTGCATGGACGAGCTCGAAGCCTTCTCCGTCCTAGAAACCCTCAAAT TTGATCTTGACAAAGGTCCAGGCGCTGGTGTCCCAACCCTTCTCGTTCTG GACAGTCTGGGGTCGTTATTTTATGAAAGAAAAGCGGCGGAGAGCTGCCA GCAAGGGCAAACCTGTTTTGATTTCATGGTTGCGCGGTGCGTGGGTCGAA TGGCAACAGCGCGGGCAGTTGCTGTGGTGGCGTGCAAGCCTGCTTTGTTC GCGGGGGCACGGACGGTGCACCATGGAGGGAGAGAGATGGAGGGAGGGAG GGAGGGAGGGAGGGACGGGTACCTGTACCTCGGGCTTGAGCATAAGGAGT ACATGCCAGGGCAGTGGTCTAAGCTGGTGACGCATCGGATGACGCTGGTG AAGGAAGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG AGGAGGAGGAGAAAGGGGGAGAGCAGTTTTCTCAGCGAGGGTGGTGTCGA TGGGCATGGTGCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATAC CAGCAGCAGCAGCGACTGCTGCAGGGAGAAGGACGAGGAGGGGCAGTGGC AGTGCATGCGTGGTTCCAGGTGGGAAAGGAGGGAGTACTAGCGTATGGCG AAGGACAGGAAGGAGAGTGCCAGTAAAAGAGAGGGAGGGAATGGTAGAGG GAGGGAGGGAGGGAGGGAGGAAGCAATGTACAGCCCTTTCTCCGTGTGGA GCTAATAGGTATAAATGTACATGTTAATTACCAGCAATCGCATCGCCTAA GCTAGTCCGCTCGAAGGGGGCGTGGGAGGAGAGAAGGGGCCTGAAAAGAA GAAACCACAGAAAAGTATAAAACGAGTAAGAGAGGGGAAAAGGGTCATGA AAGGAGCGCACACACCTTAAGGTAAGGTAAGAAAAGGTGGGGCTGTCGGC CGGCTGCGAGGGTCCACAACAGAATGAAAATACGCGAGTTGAGATATCCA ACAAAGGGAAAGGAATGGCAATGGCGATGGTTCTCTGCTGTCCCTCCTTC TTCCCGCCTCGGTCCTTAGAATGTCGGTCGTATGCTGCGTCGTCAAAAAG GGAGGAGGGGGAGGAGAGAAAGCAACTAACTAACGTCAGT
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Coding sequence (CDS) from alignment at chr9:871967..873806-

>NO09G02960.1 ID=NO09G02960.1|Name=NO09G02960.1|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at chr9:871967..873806- (Nannochloropsis oceanica)
ATGTTGCTCCAACAAACAGCTGGAGGAGGAGACAAAGGAGCGGAAAATGG
GGTGGAGTTGACTATTTCGACCTTAGGGTGTGCAGCGGCACCCGTCTTTC
GCACCGCTACCTTGGAGGACTGCCGTGTAGGCGTGACATTTCTTGATTCC
CTGGCCCCAAAGGGAGAAATGAGCGGCCAGAGAGGAAATGCTGCGCGGCT
AGGAGGTGCACGGGGAGAAGGAGGAGGAGGAGGGCTGATTCCGGGGACGG
TGCTGGAGCTGTACGGCGCATCGGGGAGCGGCAAGACCGAAGTGGCACTC
AATGCCGTGTGTGGTTGGGTGCTGCCCAAGGCGTTAGGAGGGGTGGGAGG
CGTTGCTGTGATCGTGGATCTGGACTTCCGGGTGGATGTGCGCCGGTTGC
GGTGCTTGCTCTTAGCTCGTATCCGACGGGCCTTGGCAACAGCAGGAGGA
GGAGCCGTTGAAGGACGAGATAATGGACTGCAGAATGGACAGCCAACACA
TCGAAAATGCCATCAAAGCAACAAGAACGATAAAGAAACTGCACATCCCT
CCTCTTTCTCAACCGCCACCGCATTCACAGCTTCCCAATACCTAACCGCG
GCCCTCCACCAAATCGTCCTCGCCCGGTGCATGGACGAGCTCGAAGCCTT
CTCCGTCCTAGAAACCCTCAAATTTGATCTTGACAAAGGTCCAGGCGCTG
GTGTCCCAACCCTTCTCGTTCTGGACAGTCTGGGGTCGTTATTTTATGAA
AGAAAAGCGGCGGAGAGCTGCCAGCAAGGGCAAACCTGTTTTGATTTCAT
GGTTGCGCGGTGCGTGGGTCGAATGGCAACAGCGCGGGCAGTTGCTGTGG
TGGCGTGCAAGCCTGCTTTGTTCGCGGGGGCACGGACGGTGCACCATGGA
GGGAGAGAGATGGAGGGAGGGAGGGAGGGAGGGAGGGACGGGTACCTGTA
CCTCGGGCTTGAGCATAAGGAGTACATGCCAGGGCAGTGGTCTAAGCTGG
TGACGCATCGGATGACGCTGGTGAAGGAAGATGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGGGGGAGAGCAGT
TTTCTCAGCGAGGGTGGTGTCGATGGGCATGGTGCCGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAATACCAGCAGCAGCAGCGACTGCTGCAGGGA
GAAGGACGAGGAGGGGCAGTGGCAGTGCATGCGTGGTTCCAGGTGGGAAA
GGAGGGAGTACTAGCGTATGGCGAAGGACAGGAAGGAGAGTGCCAGTAA
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Synonyms
Publications