NO09G02930.1, NO09G02930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO09G02930.1
Unique NameNO09G02930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1567
Alignment locationchr9:860184..861982 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr9genomechr9:860184..861982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO09G02930.1 vs.
Match: EWM27507.1 (hypothetical protein Naga_100948g2 [Nannochloropsis gaditana])

HSP 1 Score: 476.1 bits (1224), Expect = 7.000e-131
Identity = 218/255 (85.49%), Postives = 237/255 (92.94%), Query Frame = 0 
Query:    3 MGGRISSLVFQPPSKPSHINSTKYIVLPTSKGNMIPAFYFDRSAHLTVLVSHGNAEDLGMIYDQFFDFSRQLNVNVMAFEYSGYGKATGSPSEANCYADIDAAFKYLIETKKVVPSRLILFGRSIGSGPTCYLAERLSEGGTPVGGVILQSPVLSIFRVVFPNLRHTWWGDIFPNVDRMKRIESPVFVMHGTRDEIIPLGHGQELFLATPVKWRARPLWVEGGGHNDLEGLLRHEGTYFSCVLEFFREWCFTERG 258
            MGGRISSLVFQPPSK SHINSTKYI+LPTSKGN IPAFYFDRSAH+TVLVSHGNAEDLGMIYDQFFDFSRQLNVNVMA+EYSGYG+ATGSPSE+NCYADIDAAFKYL+E KKVVPSRL+L GRSIGSGP+CYLAERL+  GTPVGGV+LQSPVLSI RVV P+LR TWWGD+FPNVDR+KR+E P+FV+HGTRDEI+P  HGQ+LFLATPV+WRARPLWVEGGGHNDLEG LR EGTYFSCVLEF REWC  E G
Sbjct:    1 MGGRISSLVFQPPSKRSHINSTKYIILPTSKGNRIPAFYFDRSAHITVLVSHGNAEDLGMIYDQFFDFSRQLNVNVMAYEYSGYGRATGSPSESNCYADIDAAFKYLVEIKKVVPSRLVLLGRSIGSGPSCYLAERLALSGTPVGGVMLQSPVLSILRVVLPDLRWTWWGDMFPNVDRVKRMECPIFVIHGTRDEIVPFRHGQDLFLATPVQWRARPLWVEGGGHNDLEGRLRQEGTYFSCVLEFLREWCSGEGG 255
The following BLAST results are available for this feature:
BLAST of NO09G02930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27507.17.000e-13185.49hypothetical protein Naga_100948g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO09G02930NO09G02930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO09G02930.1NO09G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO09G02930.1.cds1NO09G02930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO09G02930.1.cds2NO09G02930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO09G02930.1 ID=NO09G02930.1|Name=NO09G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1567bp
TTGTGACTCAAAGTGTCACGTTTGCCGTCAGAGAAGGGTGCGGTGTTGCC
TGGAGTTTGGGCGTCATGTGTGCGTGGATGACGGGCATTGCTTGGAGAGG
TCATTCGGCGAGTCCCTGCTACTGTCCGTGACGGCAAGAGGGACACACAT
TGTAGGTGCCTTGTAGCGAAATTGGCAGTCGTGCTGCATCGCGCTACGCT
GTCTCTAGGTTGGAGGTTTGAGGCCTCTGTGTGCCTTGTACGTTGCCTTG
CTTTGCCCCCACAGAAAACCTCCCCACCTGAGGCCCTCCGCTCCTGCACA
ACTCAGGCACAGGCAGACAGCCCACTCTTCTACTCATTCCATGTGGACCT
TGCGCACCCCCTCGTAAATTTCTTTCCCGCTCCTCCGTGCAGTGTTCGAA
TTTTCCACACTCACGGCCGCGCTCGTCAGTCGGGCTTTTCCCCTTATTTT
GCTAAAGGGCGGTTTTCTTTCCCCATCCCTCCCTTTACACACAGCCTGTT
CCTTCCCTTGGTCTGCCACGCTATTCCTGCATCACCACAGTGAAGACAAG
CCTCCTCTATATCCTGTGACGTGAACCCTCTTCCATGACCATGGGTGGTC
GCATTTCCTCCCTGGTCTTCCAACCTCCATCCAAGCCTTCCCACATCAAC
TCCACCAAGTACATTGTGTTGCCCACCAGCAAGGGGAACATGATCCCGGC
ATTTTATTTCGATCGGTCCGCACATTTGACTGTATTAGTATCGCATGGGA
ATGCTGAGGACTTGGGCATGATCTACGACCAATTTTTCGACTTTTCCCGT
CAACTTAACGTGAACGTTATGGCTTTTGAATACTCGGGCTACGGCAAAGC
CACCGGTTCCCCCTCCGAAGCGAATTGCTACGCCGACATCGACGCCGCCT
TTAAGTACCTCATTGAAACAAAAAAAGTCGTCCCCTCCCGCCTCATCCTC
TTCGGCCGTTCTATCGGGAGTGGGCCAACGTGCTACTTGGCGGAACGGTT
GTCGGAAGGGGGGACGCCGGTAGGGGGAGTAATACTGCAAAGTCCTGTGT
TGTCAATCTTTAGGGTTGTATTTCCTAATTTGCGGCATACGTGGTGGGGG
GACATTTTCCCCAATGTGGACAGGATGAAGCGGATTGAAAGCCCCGTGTT
TGTGATGCACGGAACCAGGGACGAGATCATCCCGCTTGGGCATGGCCAGG
AGTTGTTCTTGGCGACCCCTGTCAAGTGGAGGGCGAGGCCACTGTGGGTG
GAGGGAGGGGGCCATAACGACTTGGAGGGGTTGTTGAGGCATGAGGGGAC
GTACTTTTCGTGTGTATTGGAGTTTTTCCGGGAGTGGTGTTTCACCGAGC
GCGGGGTTTATTAGCATAGGTGGTGCGAAAGAGGGAAGAGGCACGGGGGA
AAGAGGGAAGAGAGGGAGGAATCGTCCTTGTGGTGATGGAGGAAATGAGT
GGATGTATACAAGGAGTTTGGTCGAAAGAGACGGGAAGCACCTCCTGGGG
AAGTAACTGTTGTAGCAGCAGTAACATGGAAAGACCTCGGAAGAATAAAA
GTACAGTTGATAAATAA
back to top

protein sequence of NO09G02930.1

>NO09G02930.1-protein ID=NO09G02930.1-protein|Name=NO09G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MTMGGRISSLVFQPPSKPSHINSTKYIVLPTSKGNMIPAFYFDRSAHLTV
LVSHGNAEDLGMIYDQFFDFSRQLNVNVMAFEYSGYGKATGSPSEANCYA
DIDAAFKYLIETKKVVPSRLILFGRSIGSGPTCYLAERLSEGGTPVGGVI
LQSPVLSIFRVVFPNLRHTWWGDIFPNVDRMKRIESPVFVMHGTRDEIIP
LGHGQELFLATPVKWRARPLWVEGGGHNDLEGLLRHEGTYFSCVLEFFRE
WCFTERGVY*
back to top

mRNA from alignment at chr9:860184..861982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO09G02930.1 ID=NO09G02930.1|Name=NO09G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp|location=Sequence derived from alignment at chr9:860184..861982- (Nannochloropsis oceanica)
TTGTGACTCAAAGTGTCACGTTTGCCGTCAGAGAAGGGTGCGGTGTTGCC
TGGAGTTTGGGCGTCATGTGTGCGTGGATGACGGGCATTGCTTGGAGAGG
TCATTCGGCGAGTCCCTGCTACTGTCCGTGACGGCAAGAGGGACACACAT
TGTAGGTGCCTTGTAGCGAAATTGGCAGTCGTGCTGCATCGCGCTACGCT
GTCTCTAGGTTGGAGGTTTGAGGCCTCTGTGTGCCTTGTACGTTGCCTTG
CTTTGCCCCCACAGAAAACCTCCCCACCTGAGGCCCTCCGCTCCTGCACA
ACTCAGGCACAGGCAGACAGCCCACTCTTCTACTCATTCCATGTGGACCT
TGCGCACCCCCTCGTAAATTTCTTTCCCGCTCCTCCGTGCAGTGTTCGAA
TTTTCCACACTCACGGCCGCGCTCGTCAGTCGGGCTTTTCCCCTTATTTT
GCTAAAGGGCGGTTTTCTTTCCCCATCCCTCCCTTTACACACAGCCTGTT
CCTTCCCTTGGTCTGCCACGCTATTCCTGCATCACCACAGTGAAGACAAG
CCTCCTCTATATCCTGTGACGTGAACCCTCTTCCATGACCATGGGTGGTC
GCATTTCCTCCCTGGTCTTCCAACCTCCATCCAAGCCTTCCCACATCAAC
TCCACCAAGTACATTGTGTTGCCCACCAGCAAGGGGAACATGATCCCGGC
ATTTTATTTCGATCGGTCCGCACATTTGACTGTATTAGTATCGCATGGGA
ATGCTGAGGACTTGGGTAAGTGTTGCGAATGCTGTAGAGGACGAGGGACG
GGAGGCAGAGAGGGAGAGAGGGCGGAACGAACAAAAGAAGTGGGCCTCTA
CGCTCATCTGTGCCACTTGTCTAAATTTCCTTTTCATGCATGGACAATTT
CACGAAGTAGAAAAATCAAAAAATTGAATAGACATAAATGTTTGGGTATA
AATAAATAACCTCGAAATGATCAACAAACATCTACACAAACAACCAGGCA
TGATCTACGACCAATTTTTCGACTTTTCCCGTCAACTTAACGTGAACGTT
ATGGCTTTTGAATACTCGGGCTACGGCAAAGCCACCGGTTCCCCCTCCGA
AGCGAATTGCTACGCCGACATCGACGCCGCCTTTAAGTACCTCATTGAAA
CAAAAAAAGTCGTCCCCTCCCGCCTCATCCTCTTCGGCCGTTCTATCGGG
AGTGGGCCAACGTGCTACTTGGCGGAACGGTTGTCGGAAGGGGGGACGCC
GGTAGGGGGAGTAATACTGCAAAGTCCTGTGTTGTCAATCTTTAGGGTTG
TATTTCCTAATTTGCGGCATACGTGGTGGGGGGACATTTTCCCCAATGTG
GACAGGATGAAGCGGATTGAAAGCCCCGTGTTTGTGATGCACGGAACCAG
GGACGAGATCATCCCGCTTGGGCATGGCCAGGAGTTGTTCTTGGCGACCC
CTGTCAAGTGGAGGGCGAGGCCACTGTGGGTGGAGGGAGGGGGCCATAAC
GACTTGGAGGGGTTGTTGAGGCATGAGGGGACGTACTTTTCGTGTGTATT
GGAGTTTTTCCGGGAGTGGTGTTTCACCGAGCGCGGGGTTTATTAGCATA
GGTGGTGCGAAAGAGGGAAGAGGCACGGGGGAAAGAGGGAAGAGAGGGAG
GAATCGTCCTTGTGGTGATGGAGGAAATGAGTGGATGTATACAAGGAGTT
TGGTCGAAAGAGACGGGAAGCACCTCCTGGGGAAGTAACTGTTGTAGCAG
CAGTAACATGGAAAGACCTCGGAAGAATAAAAGTACAGTTGATAAATAA
back to top

Coding sequence (CDS) from alignment at chr9:860184..861982-

>NO09G02930.1 ID=NO09G02930.1|Name=NO09G02930.1|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at chr9:860184..861982- (Nannochloropsis oceanica)
ATGACCATGGGTGGTCGCATTTCCTCCCTGGTCTTCCAACCTCCATCCAA
GCCTTCCCACATCAACTCCACCAAGTACATTGTGTTGCCCACCAGCAAGG
GGAACATGATCCCGGCATTTTATTTCGATCGGTCCGCACATTTGACTGTA
TTAGTATCGCATGGGAATGCTGAGGACTTGGGCATGATCTACGACCAATT
TTTCGACTTTTCCCGTCAACTTAACGTGAACGTTATGGCTTTTGAATACT
CGGGCTACGGCAAAGCCACCGGTTCCCCCTCCGAAGCGAATTGCTACGCC
GACATCGACGCCGCCTTTAAGTACCTCATTGAAACAAAAAAAGTCGTCCC
CTCCCGCCTCATCCTCTTCGGCCGTTCTATCGGGAGTGGGCCAACGTGCT
ACTTGGCGGAACGGTTGTCGGAAGGGGGGACGCCGGTAGGGGGAGTAATA
CTGCAAAGTCCTGTGTTGTCAATCTTTAGGGTTGTATTTCCTAATTTGCG
GCATACGTGGTGGGGGGACATTTTCCCCAATGTGGACAGGATGAAGCGGA
TTGAAAGCCCCGTGTTTGTGATGCACGGAACCAGGGACGAGATCATCCCG
CTTGGGCATGGCCAGGAGTTGTTCTTGGCGACCCCTGTCAAGTGGAGGGC
GAGGCCACTGTGGGTGGAGGGAGGGGGCCATAACGACTTGGAGGGGTTGT
TGAGGCATGAGGGGACGTACTTTTCGTGTGTATTGGAGTTTTTCCGGGAG
TGGTGTTTCACCGAGCGCGGGGTTTATTAG
back to top
Synonyms
Publications